ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags34f13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC152982.1| Mus musculus 10 BAC RP23-36F22 (Roswell Park Canc... 44 0.45
2ref|XM_469171.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.45
3gb|AC153856.23| Mus musculus 10 BAC RP23-468J15 (Roswell Park Ca... 44 0.45
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.45
5gb|AC145387.2| Oryza sativa chromosome 3 BAC OSJNBb0031A14 genom... 44 0.45
6gb|AC135792.3| Oryza sativa chromosome 3 BAC OSJNBa0056E06 genom... 44 0.45
7emb|CT009702.5| Mouse DNA sequence from clone RP23-140A15 on chr... 44 0.45
8gb|AC117680.7| Mus musculus chromosome 1, clone RP23-435M2, comp... 44 0.45
9emb|AL929401.8| Human DNA sequence from clone RP11-366E13 on chr... 44 0.45
10emb|AL645909.11| Mouse DNA sequence from clone RP23-216O18 on ch... 44 0.45
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
12gb|AC158804.3| Mus musculus 10 BAC RP24-354M22 (Roswell Park Can... 44 0.45
13emb|AL593846.15| Mouse DNA sequence from clone RP23-171H16 on ch... 44 0.45
14dbj|AK066202.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.45
15gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
16gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
17gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
18gb|AC102096.11| Mus musculus chromosome 18, clone RP23-37J18, co... 42 1.8
19gb|AC162455.9| Mus musculus chromosome 3, clone RP24-141D15, com... 42 1.8
20gb|BC086530.1| Rattus norvegicus leucine rich repeat containing ... 42 1.8
21gb|AC102248.19| Mus musculus chromosome 18, clone RP24-158I9, co... 42 1.8
22ref|NM_001008280.1| Rattus norvegicus leucine rich repeat contai... 42 1.8
23ref|XM_793140.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.8
24emb|AL139385.12| Human DNA sequence from clone RP11-90L1 on chro... 42 1.8
25emb|X73156.1|LEPUR L.esculentum polyubiquitin repeats 42 1.8
26gb|AC161602.4| Mus musculus BAC clone RP23-336I5 from chromosome... 42 1.8
27dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
28gb|AC138620.4| Mus musculus BAC clone RP23-250E1 from 6, complet... 42 1.8
29emb|AL805928.9| Mouse DNA sequence from clone RP23-136C12 on chr... 42 1.8
30dbj|D13623.1|RATRBP34 Rat mRNA for p34 protein, complete cds 42 1.8
31gb|AC016159.5| Drosophila melanogaster clone BACR48D05, complete... 40 7.0
32gb|AC162291.13| Mus musculus chromosome 18, clone RP23-264B14, c... 40 7.0
33gb|AC120004.14| Mus musculus chromosome 5, clone RP24-150N15, co... 40 7.0
34gb|AC009393.5| Drosophila melanogaster clone BACR17F05, complete... 40 7.0
35gb|AC008097.5| Drosophila melanogaster clone BACR20D06, complete... 40 7.0
36gb|AC147377.4| Mus musculus BAC clone RP23-156K23 from chromosom... 40 7.0
37gb|AC138790.2| Mus musculus BAC clone RP23-292H23 from chromosom... 40 7.0
38gb|AC114583.7| Mus musculus chromosome 1, clone RP23-195A24, com... 40 7.0
39gb|AC124179.4| Mus musculus chromosome 12 clone RP23-198B21, com... 40 7.0
40gb|AC139863.5| Mus musculus chromosome 14, clone RP23-19M21, com... 40 7.0
41gb|AC185538.1| Drosophila melanogaster clone BACR04D19, complete... 40 7.0
42ref|XM_802892.1| Trypanosoma cruzi strain CL Brener pumilio/PUF ... 40 7.0
43gb|AC122466.2| Mus musculus BAC clone RP24-304N8 from chromosome... 40 7.0
44gb|AC117229.3| Mus musculus BAC clone RP23-380M1 from chromosome... 40 7.0
45gb|AC127413.3| Mus musculus BAC clone RP23-236A4 from 15, comple... 40 7.0
46gb|AC124544.4| Mus musculus BAC clone RP23-266K17 from 8, comple... 40 7.0
47gb|AC151481.4| Medicago truncatula clone mth2-3m11, complete seq... 40 7.0
48emb|AL137069.15| Human DNA sequence from clone RP11-167C5 on chr... 40 7.0
49gb|AC157815.9| Mus musculus chromosome 3, clone RP24-175G5, comp... 40 7.0
50emb|AL645739.9| Mouse DNA sequence from clone RP23-213I10 on chr... 40 7.0
51emb|AL589701.9| Mouse DNA sequence from clone RP23-202F3 on chro... 40 7.0
52gb|AC156615.7| Mus musculus chromosome 3, clone RP23-1B20, compl... 40 7.0
53gb|AC125609.7| Homo sapiens 3 BAC RP11-190A1 (Roswell Park Cance... 40 7.0
54gb|AC099842.2| Homo sapiens chromosome 11, clone RP11-747E23, co... 40 7.0
55gb|AC010574.5| Drosophila melanogaster 3L BAC RP98-7L7 (Roswell ... 40 7.0
56gb|AC025946.9| Homo sapiens chromosome 10 clone RP11-543F8, comp... 40 7.0
57dbj|AK137091.1| Mus musculus 12 days embryo embryonic body betwe... 40 7.0
58gb|AC104040.3| Homo sapiens chromosome 8, clone CTD-2023L15, com... 40 7.0
59emb|AL929393.8| Mouse DNA sequence from clone RP23-94P7 on chrom... 40 7.0
60gb|AC159102.2| Mus musculus BAC clone RP24-144C11 from chromosom... 40 7.0
61gb|AC158533.2| Mus musculus BAC clone RP23-107I15 from chromosom... 40 7.0
62emb|CR383658.1| Human chromosome 14 DNA sequence BAC R-754I20 of... 40 7.0
63gb|AC018377.6|AC018377 Homo sapiens, clone RP11-4C16, complete s... 40 7.0
64dbj|AK078800.1| Mus musculus 16 days embryo lung cDNA, RIKEN ful... 40 7.0
65gb|AC157649.4| Mus musculus chromosome 18, clone wi1-1972H24, co... 40 7.0
66gb|AC154592.2| Mus musculus BAC clone RP23-249J17 from chromosom... 40 7.0
67gb|AC154524.2| Mus musculus BAC clone RP24-68D23 from chromosome... 40 7.0
68gb|AC116849.11| Mus musculus chromosome 19, clone RP24-395F1, co... 40 7.0
69gb|AC108112.2| Homo sapiens chromosome 5 clone RP11-267A15, comp... 40 7.0
70gb|AC171009.3| Gallus gallus BAC clone CH261-146H18 from chromos... 40 7.0
71emb|AL928798.20| Mouse DNA sequence from clone RP23-7A19 on chro... 40 7.0
72gb|AC006144.1|AC006144 Homo sapiens PAC clone RP1-296G17 from Xq... 40 7.0
73gb|AE003697.4| Drosophila melanogaster chromosome 3R, section 35... 40 7.0
74gb|AE003793.3| Drosophila melanogaster chromosome 2R, section 57... 40 7.0
75gb|AE003789.5| Drosophila melanogaster chromosome 2R, section 6 ... 40 7.0
76emb|CR942521.2| Xenopus tropicalis finished cDNA, clone TEgg012i24 40 7.0
77gb|AE003530.3| Drosophila melanogaster chromosome 3L, section 55... 40 7.0
78gb|CP000222.1| Drosophila melanogaster genomic scaffold 21100002... 40 7.0
79gb|CP000185.1| Drosophila melanogaster genomic scaffold 21100002... 40 7.0
80emb|CT010477.16| Mouse DNA sequence from clone RP23-361M19 on ch... 40 7.0
81gb|AC140983.4| Mus musculus BAC clone RP23-167M17 from 18, compl... 40 7.0
82gb|AC133195.4| Mus musculus BAC clone RP23-133F6 from 8, complet... 40 7.0
83emb|AL772250.12| Zebrafish DNA sequence from clone CH211-160M22,... 40 7.0
84gb|AY219709.1| Drosophila virilis clone V2 non-LTR retrotranspos... 40 7.0
85gb|AY219708.1| Drosophila virilis clone V8 non-LTR retrotranspos... 40 7.0
86emb|AL806535.7| Mouse DNA sequence from clone RP23-456J6 on chro... 40 7.0
87dbj|AP000540.2| Homo sapiens genomic DNA, chromosome 22q11.2, Ca... 40 7.0 
>gb|AC152982.1| Mus musculus 10 BAC RP23-36F22 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 214493

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 395   gttgttgctgctgctgctttct 416
             ||||||||||||||||||||||
Sbjct: 37941 gttgttgctgctgctgctttct 37962
to top
>ref|XM_469171.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1421

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 396 ttgttgctgctgctgctttctg 417
           ||||||||||||||||||||||
Sbjct: 185 ttgttgctgctgctgctttctg 206
to top
>gb|AC153856.23| Mus musculus 10 BAC RP23-468J15 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 188027

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 395   gttgttgctgctgctgctttct 416
             ||||||||||||||||||||||
Sbjct: 28690 gttgttgctgctgctgctttct 28711
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 396      ttgttgctgctgctgctttctg 417
                ||||||||||||||||||||||
Sbjct: 25868705 ttgttgctgctgctgctttctg 25868684
to top
>gb|AC145387.2| Oryza sativa chromosome 3 BAC OSJNBb0031A14 genomic sequence, complete
             sequence
          Length = 44761

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 396   ttgttgctgctgctgctttctg 417
             ||||||||||||||||||||||
Sbjct: 39648 ttgttgctgctgctgctttctg 39627
to top
>gb|AC135792.3| Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence, complete
              sequence
          Length = 140720

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 396    ttgttgctgctgctgctttctg 417
              ||||||||||||||||||||||
Sbjct: 139215 ttgttgctgctgctgctttctg 139236
to top
>emb|CT009702.5| Mouse DNA sequence from clone RP23-140A15 on chromosome 16, complete
              sequence
          Length = 230233

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 395    gttgttgctgctgctgctttct 416
              ||||||||||||||||||||||
Sbjct: 161818 gttgttgctgctgctgctttct 161839
to top
>gb|AC117680.7| Mus musculus chromosome 1, clone RP23-435M2, complete sequence
          Length = 202195

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 395   gttgttgctgctgctgctttct 416
             ||||||||||||||||||||||
Sbjct: 54886 gttgttgctgctgctgctttct 54865
to top
>emb|AL929401.8| Human DNA sequence from clone RP11-366E13 on chromosome X Contains the
             gene for a novel protein similar to 40S ribosomal protein
             S26 (RPS26) and two CpG islands, complete sequence
          Length = 194095

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 447   accatcactaccctcctcctga 468
             ||||||||||||||||||||||
Sbjct: 19542 accatcactaccctcctcctga 19521
to top
>emb|AL645909.11| Mouse DNA sequence from clone RP23-216O18 on chromosome 11 Contains the
              Lcp2 gene for lymphocyte cytosolic protein 2,  the 5' end
              of a novel gene and a novel gene, complete sequence
          Length = 186087

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 280    ttatgcctcatctctcagctttgcat 305
              ||||||||||||||| ||||||||||
Sbjct: 160108 ttatgcctcatctctgagctttgcat 160133
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 396      ttgttgctgctgctgctttctg 417
                ||||||||||||||||||||||
Sbjct: 25960014 ttgttgctgctgctgctttctg 25959993
to top
>gb|AC158804.3| Mus musculus 10 BAC RP24-354M22 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 151309

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 395   gttgttgctgctgctgctttct 416
             ||||||||||||||||||||||
Sbjct: 86770 gttgttgctgctgctgctttct 86791
to top
>emb|AL593846.15| Mouse DNA sequence from clone RP23-171H16 on chromosome 11, complete
              sequence
          Length = 213263

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 396    ttgttgctgctgctgctttctg 417
              ||||||||||||||||||||||
Sbjct: 176819 ttgttgctgctgctgctttctg 176798
to top
>dbj|AK066202.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056K06, full
           insert sequence
          Length = 1308

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 396 ttgttgctgctgctgctttctg 417
           ||||||||||||||||||||||
Sbjct: 72  ttgttgctgctgctgctttctg 93
to top
>gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0020H14,
              complete sequence
          Length = 185623

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 395    gttgttgctgctgctgctttc 415
              |||||||||||||||||||||
Sbjct: 177168 gttgttgctgctgctgctttc 177188
to top
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
             complete sequence
          Length = 155402

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 395   gttgttgctgctgctgctttc 415
             |||||||||||||||||||||
Sbjct: 14488 gttgttgctgctgctgctttc 14508
to top
>gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0017D10,
             complete sequence
          Length = 149870

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 396   ttgttgctgctgctgctttct 416
             |||||||||||||||||||||
Sbjct: 53124 ttgttgctgctgctgctttct 53144
to top
>gb|AC102096.11| Mus musculus chromosome 18, clone RP23-37J18, complete sequence
          Length = 180965

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 396    ttgttgctgctgctgctttct 416
              |||||||||||||||||||||
Sbjct: 150495 ttgttgctgctgctgctttct 150475
to top
>gb|AC162455.9| Mus musculus chromosome 3, clone RP24-141D15, complete sequence
          Length = 161155

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 181   aaatggaaaccaaaactattt 201
             |||||||||||||||||||||
Sbjct: 93326 aaatggaaaccaaaactattt 93346
to top
>gb|BC086530.1| Rattus norvegicus leucine rich repeat containing 59, mRNA (cDNA
           clone MGC:105677 IMAGE:7304726), complete cds
          Length = 2825

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 389 gaaggngttgttgctgctgctgct 412
           ||||| ||||||||||||||||||
Sbjct: 953 gaaggggttgttgctgctgctgct 976
to top
>gb|AC102248.19| Mus musculus chromosome 18, clone RP24-158I9, complete sequence
          Length = 206000

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 396    ttgttgctgctgctgctttct 416
              |||||||||||||||||||||
Sbjct: 186842 ttgttgctgctgctgctttct 186862
to top
>ref|NM_001008280.1| Rattus norvegicus leucine rich repeat containing 59 (Lrrc59), mRNA
          Length = 2825

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 389 gaaggngttgttgctgctgctgct 412
           ||||| ||||||||||||||||||
Sbjct: 953 gaaggggttgttgctgctgctgct 976
to top
>ref|XM_793140.1| PREDICTED: Strongylocentrotus purpuratus similar to CG6340-PB,
            isoform B (LOC593670), mRNA
          Length = 1929

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 399  ttgctgctgctgctttctgag 419
            |||||||||||||||||||||
Sbjct: 1390 ttgctgctgctgctttctgag 1370
to top
>emb|AL139385.12| Human DNA sequence from clone RP11-90L1 on chromosome 13 Contains the
            3' end of the COL4A2 gene for collagen type IV alpha 2,
            the RAB20 gene for a RAS oncogene family member, a novel
            gene (FLJ10769 FLJ25038 FLJ14198), the 5' end of a novel
            gene (FLJ12118) and three CpG islands, complete sequence
          Length = 177392

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 397  tgttgctgctgctgctttctg 417
            |||||||||||||||||||||
Sbjct: 5244 tgttgctgctgctgctttctg 5264
to top
>emb|X73156.1|LEPUR L.esculentum polyubiquitin repeats
          Length = 3885

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 177 taccaaatggaaaccaaaact 197
           |||||||||||||||||||||
Sbjct: 902 taccaaatggaaaccaaaact 882
to top
>gb|AC161602.4| Mus musculus BAC clone RP23-336I5 from chromosome 6, complete sequence
          Length = 224158

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 395    gttgttgctgctgctgctttc 415
              |||||||||||||||||||||
Sbjct: 191101 gttgttgctgctgctgctttc 191081
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 395      gttgttgctgctgctgctttc 415
                |||||||||||||||||||||
Sbjct: 21623312 gttgttgctgctgctgctttc 21623332



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 396      ttgttgctgctgctgctttct 416
                |||||||||||||||||||||
Sbjct: 20054799 ttgttgctgctgctgctttct 20054819
to top
>gb|AC138620.4| Mus musculus BAC clone RP23-250E1 from 6, complete sequence
          Length = 209846

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 395    gttgttgctgctgctgctttc 415
              |||||||||||||||||||||
Sbjct: 133441 gttgttgctgctgctgctttc 133461
to top
>emb|AL805928.9| Mouse DNA sequence from clone RP23-136C12 on chromosome 2, complete
             sequence
          Length = 192297

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 400   tgctgctgctgctttctgagt 420
             |||||||||||||||||||||
Sbjct: 64597 tgctgctgctgctttctgagt 64617
to top
>dbj|D13623.1|RATRBP34 Rat mRNA for p34 protein, complete cds
          Length = 2842

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 389  gaaggngttgttgctgctgctgct 412
            ||||| ||||||||||||||||||
Sbjct: 990  gaaggggttgttgctgctgctgct 1013
to top
>gb|AC016159.5| Drosophila melanogaster clone BACR48D05, complete sequence
          Length = 188725

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 395    gttgttgctgctgctgcttt 414
              ||||||||||||||||||||
Sbjct: 175343 gttgttgctgctgctgcttt 175362
to top
>gb|AC162291.13| Mus musculus chromosome 18, clone RP23-264B14, complete sequence
          Length = 198736

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 395 gttgttgctgctgctgcttt 414
           ||||||||||||||||||||
Sbjct: 894 gttgttgctgctgctgcttt 875
to top
>gb|AC120004.14| Mus musculus chromosome 5, clone RP24-150N15, complete sequence
          Length = 199229

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 17797 gttgttgctgctgctgcttt 17816
to top
>gb|AC009393.5| Drosophila melanogaster clone BACR17F05, complete sequence
          Length = 198037

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 61777 gttgttgctgctgctgcttt 61758
to top
>gb|AC008097.5| Drosophila melanogaster clone BACR20D06, complete sequence
          Length = 185670

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 390    aaggngttgttgctgctgctgct 412
              |||| ||||||||||||||||||
Sbjct: 133888 aaggtgttgttgctgctgctgct 133866
to top
>gb|AC147377.4| Mus musculus BAC clone RP23-156K23 from chromosome 5, complete sequence
          Length = 236084

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 72898 gttgttgctgctgctgcttt 72879
to top
>gb|AC138790.2| Mus musculus BAC clone RP23-292H23 from chromosome 19, complete sequence
          Length = 197765

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 400    tgctgctgctgctttctgag 419
              ||||||||||||||||||||
Sbjct: 149678 tgctgctgctgctttctgag 149659
to top
>gb|AC114583.7| Mus musculus chromosome 1, clone RP23-195A24, complete sequence
          Length = 227529

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 68185 gttgttgctgctgctgcttt 68204
to top
>gb|AC124179.4| Mus musculus chromosome 12 clone RP23-198B21, complete sequence
          Length = 192472

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 395    gttgttgctgctgctgcttt 414
              ||||||||||||||||||||
Sbjct: 102920 gttgttgctgctgctgcttt 102939
to top
>gb|AC139863.5| Mus musculus chromosome 14, clone RP23-19M21, complete sequence
          Length = 194221

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 15919 gttgttgctgctgctgcttt 15900
to top
>gb|AC185538.1| Drosophila melanogaster clone BACR04D19, complete sequence
          Length = 159597

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    gttgttgctgctgctgcttt 414
              ||||||||||||||||||||
Sbjct: 125206 gttgttgctgctgctgcttt 125187
to top
>ref|XM_802892.1| Trypanosoma cruzi strain CL Brener pumilio/PUF RNA binding protein
           6 (Tc00.1047053510125.10) partial mRNA
          Length = 2484

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 395 gttgttgctgctgctgcttt 414
           ||||||||||||||||||||
Sbjct: 76  gttgttgctgctgctgcttt 57
to top
>gb|AC122466.2| Mus musculus BAC clone RP24-304N8 from chromosome 5, complete sequence
          Length = 196687

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 13476 gttgttgctgctgctgcttt 13495
to top
>gb|AC117229.3| Mus musculus BAC clone RP23-380M1 from chromosome 2, complete sequence
          Length = 187221

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 214    aaccaattgatgccaaagct 233
              ||||||||||||||||||||
Sbjct: 121894 aaccaattgatgccaaagct 121913
to top
>gb|AC127413.3| Mus musculus BAC clone RP23-236A4 from 15, complete sequence
          Length = 194448

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 84944 gttgttgctgctgctgcttt 84963
to top
>gb|AC124544.4| Mus musculus BAC clone RP23-266K17 from 8, complete sequence
          Length = 150266

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   tgttgctgctgctgctttct 416
             ||||||||||||||||||||
Sbjct: 69533 tgttgctgctgctgctttct 69514
to top
>gb|AC151481.4| Medicago truncatula clone mth2-3m11, complete sequence
          Length = 99012

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 51474 gttgttgctgctgctgcttt 51493
to top
>emb|AL137069.15| Human DNA sequence from clone RP11-167C5 on chromosome 9 Contains part
             of a variant of the PTPRD gene for protein tyrosine
             phosphatase, receptor type, D (HPTP, PTPD, HPTPD),
             complete sequence
          Length = 171852

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 47113 gttgttgctgctgctgcttt 47132
to top
>gb|AC157815.9| Mus musculus chromosome 3, clone RP24-175G5, complete sequence
          Length = 170361

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    aatggaaaccaaaactattt 201
              ||||||||||||||||||||
Sbjct: 157035 aatggaaaccaaaactattt 157016
to top
>emb|AL645739.9| Mouse DNA sequence from clone RP23-213I10 on chromosome 11 Contains the
              Trpv3 gene for transient receptor potential cation channel
              subfamily V member 3, the Aspa gene for aspartoacylase
              (aminoacylase) 2, a novel gene, the genes for olfactory
              receptor MOR135-11, 12, 13, 2, 1, three olfactory receptor
              MOR135 pseudogenes and a CpG island, complete sequence
          Length = 208137

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    gttgttgctgctgctgcttt 414
              ||||||||||||||||||||
Sbjct: 126202 gttgttgctgctgctgcttt 126183
to top
>emb|AL589701.9| Mouse DNA sequence from clone RP23-202F3 on chromosome 13 Contains a
             novel gene and the 3' end of a novel gene (1190005B03Rik),
             complete sequence
          Length = 219200

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 47255 gttgttgctgctgctgcttt 47236
to top
>gb|AC156615.7| Mus musculus chromosome 3, clone RP23-1B20, complete sequence
          Length = 210003

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   tgttgctgctgctgctttct 416
             ||||||||||||||||||||
Sbjct: 59676 tgttgctgctgctgctttct 59657
to top
>gb|AC125609.7| Homo sapiens 3 BAC RP11-190A1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 126838

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 65323 gttgttgctgctgctgcttt 65342
to top
>gb|AC099842.2| Homo sapiens chromosome 11, clone RP11-747E23, complete sequence
          Length = 159274

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 81989 gttgttgctgctgctgcttt 82008
to top
>gb|AC010574.5| Drosophila melanogaster 3L BAC RP98-7L7 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 162402

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 90681 gttgttgctgctgctgcttt 90700
to top
>gb|AC025946.9| Homo sapiens chromosome 10 clone RP11-543F8, complete sequence
          Length = 197191

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 395    gttgttgctgctgctgcttt 414
              ||||||||||||||||||||
Sbjct: 190144 gttgttgctgctgctgcttt 190163
to top
>dbj|AK137091.1| Mus musculus 12 days embryo embryonic body between diaphragm region
           and neck cDNA, RIKEN full-length enriched library,
           clone:9430070K12 product:hypothetical protein, full
           insert sequence
          Length = 2861

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 395 gttgttgctgctgctgcttt 414
           ||||||||||||||||||||
Sbjct: 686 gttgttgctgctgctgcttt 705
to top
>gb|AC104040.3| Homo sapiens chromosome 8, clone CTD-2023L15, complete sequence
          Length = 136646

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 179  ccaaatggaaaccaaaactatttc 202
            |||||||||||||||||| |||||
Sbjct: 8436 ccaaatggaaaccaaaacaatttc 8413
to top
>emb|AL929393.8| Mouse DNA sequence from clone RP23-94P7 on chromosome 4, complete
             sequence
          Length = 202299

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 87151 gttgttgctgctgctgcttt 87170
to top
>gb|AC159102.2| Mus musculus BAC clone RP24-144C11 from chromosome 9, complete sequence
          Length = 177653

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 28657 gttgttgctgctgctgcttt 28676
to top
>gb|AC158533.2| Mus musculus BAC clone RP23-107I15 from chromosome 14, complete sequence
          Length = 199608

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 395    gttgttgctgctgctgcttt 414
              ||||||||||||||||||||
Sbjct: 123013 gttgttgctgctgctgcttt 123032
to top
>emb|CR383658.1| Human chromosome 14 DNA sequence BAC R-754I20 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 178323

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   ctgctgctgctttctgagtt 421
             ||||||||||||||||||||
Sbjct: 68990 ctgctgctgctttctgagtt 69009
to top
>gb|AC018377.6|AC018377 Homo sapiens, clone RP11-4C16, complete sequence
          Length = 163644

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 179    ccaaatggaaaccaaaactatttc 202
              |||||||||||||||||| |||||
Sbjct: 112296 ccaaatggaaaccaaaacaatttc 112273
to top
>dbj|AK078800.1| Mus musculus 16 days embryo lung cDNA, RIKEN full-length enriched
           library, clone:8430401K20 product:unclassifiable, full
           insert sequence
          Length = 1753

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 395 gttgttgctgctgctgcttt 414
           ||||||||||||||||||||
Sbjct: 622 gttgttgctgctgctgcttt 603
to top
>gb|AC157649.4| Mus musculus chromosome 18, clone wi1-1972H24, complete sequence
          Length = 36891

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 25494 gttgttgctgctgctgcttt 25513
to top
>gb|AC154592.2| Mus musculus BAC clone RP23-249J17 from chromosome 14, complete
             sequence
          Length = 211647

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 80046 gttgttgctgctgctgcttt 80065
to top
>gb|AC154524.2| Mus musculus BAC clone RP24-68D23 from chromosome 16, complete sequence
          Length = 252926

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 95067 gttgttgctgctgctgcttt 95086
to top
>gb|AC116849.11| Mus musculus chromosome 19, clone RP24-395F1, complete sequence
          Length = 168486

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 72106 gttgttgctgctgctgcttt 72125
to top
>gb|AC108112.2| Homo sapiens chromosome 5 clone RP11-267A15, complete sequence
          Length = 154752

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   gttgttgctgctgctgcttt 414
             ||||||||||||||||||||
Sbjct: 48223 gttgttgctgctgctgcttt 48204
to top
>gb|AC171009.3| Gallus gallus BAC clone CH261-146H18 from chromosome ul, complete
              sequence
          Length = 197416

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     ctacctatctctccatgcta 108
              ||||||||||||||||||||
Sbjct: 144060 ctacctatctctccatgcta 144079
to top
>emb|AL928798.20| Mouse DNA sequence from clone RP23-7A19 on chromosome 2, complete
            sequence
          Length = 192734

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 214  aaccaattgatgccaaagct 233
            ||||||||||||||||||||
Sbjct: 3607 aaccaattgatgccaaagct 3588
to top
>gb|AC006144.1|AC006144 Homo sapiens PAC clone RP1-296G17 from Xq23, complete sequence
          Length = 81184

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   caaaactatttcattctttc 210
             ||||||||||||||||||||
Sbjct: 20762 caaaactatttcattctttc 20743
to top
>gb|AE003697.4| Drosophila melanogaster chromosome 3R, section 35 of 118 of the complete
              sequence
          Length = 221239

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    gttgttgctgctgctgcttt 414
              ||||||||||||||||||||
Sbjct: 203070 gttgttgctgctgctgcttt 203051
to top
>gb|AE003793.3| Drosophila melanogaster chromosome 2R, section 57 of 73 of the complete
             sequence
          Length = 271902

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 390   aaggngttgttgctgctgctgct 412
             |||| ||||||||||||||||||
Sbjct: 76381 aaggtgttgttgctgctgctgct 76359
to top
>gb|AE003789.5| Drosophila melanogaster chromosome 2R, section 6 of 73 of the complete
              sequence
          Length = 415717

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    gttgttgctgctgctgcttt 414
              ||||||||||||||||||||
Sbjct: 149027 gttgttgctgctgctgcttt 149008
to top
>emb|CR942521.2| Xenopus tropicalis finished cDNA, clone TEgg012i24
          Length = 3612

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 457 ccctcctcctgataatgccaaggt 480
           ||||||||||||| ||||||||||
Sbjct: 180 ccctcctcctgatgatgccaaggt 157
to top
>gb|AE003530.3| Drosophila melanogaster chromosome 3L, section 55 of 83 of the complete
              sequence
          Length = 279152

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 395    gttgttgctgctgctgcttt 414
              ||||||||||||||||||||
Sbjct: 103713 gttgttgctgctgctgcttt 103732
to top
>gb|CP000222.1| Drosophila melanogaster genomic scaffold 211000022280779
          Length = 313010

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    gttgttgctgctgctgcttt 414
              ||||||||||||||||||||
Sbjct: 147786 gttgttgctgctgctgcttt 147767



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    gttgttgctgctgctgcttt 414
              ||||||||||||||||||||
Sbjct: 143466 gttgttgctgctgctgcttt 143447



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    gttgttgctgctgctgcttt 414
              ||||||||||||||||||||
Sbjct: 139152 gttgttgctgctgctgcttt 139133
to top
>gb|CP000185.1| Drosophila melanogaster genomic scaffold 211000022280614
          Length = 65360

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 395  gttgttgctgctgctgcttt 414
            ||||||||||||||||||||
Sbjct: 7056 gttgttgctgctgctgcttt 7037
to top
>emb|CT010477.16| Mouse DNA sequence from clone RP23-361M19 on chromosome 13, complete
              sequence
          Length = 192967

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    gttgttgctgctgctgcttt 414
              ||||||||||||||||||||
Sbjct: 103820 gttgttgctgctgctgcttt 103801
to top
>gb|AC140983.4| Mus musculus BAC clone RP23-167M17 from 18, complete sequence
          Length = 193004

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    gttgttgctgctgctgcttt 414
              ||||||||||||||||||||
Sbjct: 138398 gttgttgctgctgctgcttt 138379
to top
>gb|AC133195.4| Mus musculus BAC clone RP23-133F6 from 8, complete sequence
          Length = 214318

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   tgttgctgctgctgctttct 416
             ||||||||||||||||||||
Sbjct: 12012 tgttgctgctgctgctttct 11993
to top
>emb|AL772250.12| Zebrafish DNA sequence from clone CH211-160M22, complete sequence
          Length = 159758

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   ctatttcattctttctacaa 215
             ||||||||||||||||||||
Sbjct: 46225 ctatttcattctttctacaa 46244
to top
>gb|AY219709.1| Drosophila virilis clone V2 non-LTR retrotransposon TART tandem
            array, partial sequence
          Length = 15099

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 395  gttgttgctgctgctgcttt 414
            ||||||||||||||||||||
Sbjct: 7299 gttgttgctgctgctgcttt 7280
to top
>gb|AY219708.1| Drosophila virilis clone V8 non-LTR retrotransposon TART tandem
            array, partial sequence; and non-LTR retrotransposon
            HeT-A, partial sequence
          Length = 14854

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 395  gttgttgctgctgctgcttt 414
            ||||||||||||||||||||
Sbjct: 5130 gttgttgctgctgctgcttt 5111
to top
>emb|AL806535.7| Mouse DNA sequence from clone RP23-456J6 on chromosome 4, complete
              sequence
          Length = 181854

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    gttgttgctgctgctgcttt 414
              ||||||||||||||||||||
Sbjct: 176020 gttgttgctgctgctgcttt 176001
to top
>dbj|AP000540.2| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
             clone:c53D1
          Length = 41100

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   ctgctgctgctttctgagtt 421
             ||||||||||||||||||||
Sbjct: 28722 ctgctgctgctttctgagtt 28741


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,074,607
Number of Sequences: 3902068
Number of extensions: 5074607
Number of successful extensions: 181895
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 181411
Number of HSP's gapped (non-prelim): 484
length of query: 517
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 494
effective length of database: 17,143,297,704
effective search space: 8468789065776
effective search space used: 8468789065776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top