ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags34f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AOC4_ARATH (Q93ZC5) Allene oxide cyclase 4, chloroplast precurso... 201 2e-51
2AOC1_ARATH (Q9LS03) Allene oxide cyclase 1, chloroplast precurso... 197 3e-50
3AOC3_ARATH (Q9LS01) Allene oxide cyclase 3, chloroplast precurso... 196 3e-50
4AOC2_ARATH (Q9LS02) Allene oxide cyclase 2, chloroplast precurso... 192 5e-49
5TWF1_XENLA (Q68F50) Twinfilin-1 31 3.3
6ABCAC_HUMAN (Q86UK0) ATP-binding cassette sub-family A member 12... 30 5.6
7PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A me... 30 7.2
8CTX80_EUPOC (Q9N9X3) Ciliary WD repeat-containing protein ctxp80 30 7.2
9MATK_PARAU (Q5YJY5) Maturase K (Intron maturase) 29 9.5

>AOC4_ARATH (Q93ZC5) Allene oxide cyclase 4, chloroplast precursor (EC|
           5.3.99.6)
          Length = 254

 Score =  201 bits (510), Expect = 2e-51
 Identities = 96/147 (65%), Positives = 114/147 (77%), Gaps = 1/147 (0%)
 Frame = -2

Query: 597 QNALGDLVPFTNKVYNGSLDKRIGITAGICILIQHVPERNGDRYEAIYSMYFGDYGHISL 418
           Q  LGDLVPFTNK+Y G L KRIGITAG+C+LIQHVPE+ GDR+EA YS YFGDYGHIS+
Sbjct: 108 QLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISV 167

Query: 417 QGPYLTYEESYLAVTGGSGVFEGVYGQVKLNQIVFPFKIFYTFYLKGI-PDLPKELLCXX 241
           QGPYLTYE+++LA+TGGSGVFEG YGQVKL Q+V+P K+FYTFYLKG+  DLP EL    
Sbjct: 168 QGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFYTFYLKGVAADLPVELTGKH 227

Query: 240 XXXXXXXXXXPAAKATEPHACLNNFTD 160
                       A+AT+P A + NFT+
Sbjct: 228 VEPSKEVKPAAEAQATQPGATIANFTN 254



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>AOC1_ARATH (Q9LS03) Allene oxide cyclase 1, chloroplast precursor (EC|
           5.3.99.6) (Early-responsive to dehydration 12 protein)
          Length = 254

 Score =  197 bits (500), Expect = 3e-50
 Identities = 91/144 (63%), Positives = 115/144 (79%), Gaps = 1/144 (0%)
 Frame = -2

Query: 588 LGDLVPFTNKVYNGSLDKRIGITAGICILIQHVPERNGDRYEAIYSMYFGDYGHISLQGP 409
           LGDLVPFTNK+Y G L KR+GITAG+C++I+HVPE+NGDR+EA YS YFGDYGH+S+QGP
Sbjct: 111 LGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGP 170

Query: 408 YLTYEESYLAVTGGSGVFEGVYGQVKLNQIVFPFKIFYTFYLKGIP-DLPKELLCXXXXX 232
           YLTYE+S+LA+TGG+G+FEG YGQVKL Q+V+P K+FYTFYLKG+  DLP EL+      
Sbjct: 171 YLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPP 230

Query: 231 XXXXXXXPAAKATEPHACLNNFTD 160
                  P AKA +P   ++NFT+
Sbjct: 231 SKDVEPAPEAKALKPSGVVSNFTN 254



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>AOC3_ARATH (Q9LS01) Allene oxide cyclase 3, chloroplast precursor (EC|
           5.3.99.6)
          Length = 258

 Score =  196 bits (499), Expect = 3e-50
 Identities = 93/144 (64%), Positives = 113/144 (78%), Gaps = 1/144 (0%)
 Frame = -2

Query: 588 LGDLVPFTNKVYNGSLDKRIGITAGICILIQHVPERNGDRYEAIYSMYFGDYGHISLQGP 409
           LGDLVPFTNK+Y G L KR+GITAG+C+LIQHVPE++GDR+EA YS YFGDYGH+S+QG 
Sbjct: 115 LGDLVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQ 174

Query: 408 YLTYEESYLAVTGGSGVFEGVYGQVKLNQIVFPFKIFYTFYLKGIP-DLPKELLCXXXXX 232
           YLTYE+++LAVTGGSG+FEG YGQVKL Q+V+P K+FYTFYLKG+  DLP EL       
Sbjct: 175 YLTYEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTFYLKGLANDLPLELTGTAVTP 234

Query: 231 XXXXXXXPAAKATEPHACLNNFTD 160
                  P AKA EP   ++NFT+
Sbjct: 235 SKDVKPAPEAKAMEPSGVISNFTN 258



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>AOC2_ARATH (Q9LS02) Allene oxide cyclase 2, chloroplast precursor (EC|
           5.3.99.6)
          Length = 253

 Score =  192 bits (489), Expect = 5e-49
 Identities = 89/144 (61%), Positives = 113/144 (78%), Gaps = 1/144 (0%)
 Frame = -2

Query: 588 LGDLVPFTNKVYNGSLDKRIGITAGICILIQHVPERNGDRYEAIYSMYFGDYGHISLQGP 409
           LGDLVPFTNK+Y G L KR+GITAG+C++I+HVPE+ G+R+EA YS YFGDYGH+S+QGP
Sbjct: 110 LGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGP 169

Query: 408 YLTYEESYLAVTGGSGVFEGVYGQVKLNQIVFPFKIFYTFYLKGIP-DLPKELLCXXXXX 232
           YLTYE+S+LA+TGG+G+FEG YGQVKL Q+V+P K+FYTFYLKG+  DLP EL       
Sbjct: 170 YLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPP 229

Query: 231 XXXXXXXPAAKATEPHACLNNFTD 160
                  P AKA EP   ++N+T+
Sbjct: 230 SKDIEPAPEAKALEPSGVISNYTN 253



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>TWF1_XENLA (Q68F50) Twinfilin-1|
          Length = 350

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = -2

Query: 510 CILIQHVPERNGDRYEAIYSMYFGDYGHISLQGPYLTYEESYLAVTGGSGVFEGVYGQVK 331
           C ++  +  +N   +E I+  +  DY H+  +  Y     +     GG  + E ++G VK
Sbjct: 67  CYILYRLDSQNAQGFEWIFIAWSPDYSHVRQKMLYAATRATVKKEFGGGHIKEEIFGTVK 126



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>ABCAC_HUMAN (Q86UK0) ATP-binding cassette sub-family A member 12 (ATP-binding|
           cassette transporter 12) (ATP-binding cassette 12)
          Length = 2595

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = -2

Query: 177 LNNFTD*LYL*STLPSYVMYTNC------SCSRAS*MNLRVLQSTLKIISSAVR 34
           L NF D L   S    Y+ Y  C      S +R S  NLR+LQST++   S +R
Sbjct: 358 LENFEDALLNISANSPYIPYLACVRNVTDSLARGSPENLRLLQSTIRFKKSFLR 411



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>PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A member 1 (T-cell|
           death-associated gene 51 protein) (Apoptosis-associated
           nuclear protein) (Proline- and histidine-rich protein)
           (Proline- and glutamine-rich protein) (PQ-rich protein)
          Length = 259

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
 Frame = -1

Query: 334 QAQPDRLPLQDLLHFLPQGHPGPAKGAALHARP---------AFPHRRANARRQGHRATR 182
           Q QP   P    LH  P  HP P      H  P           PH + +++  GHR  R
Sbjct: 194 QPQPQPKPQPQQLHPYPHPHPHPHSHPHSHPHPHPHPHPHQIPHPHPQPHSQPHGHRLLR 253



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>CTX80_EUPOC (Q9N9X3) Ciliary WD repeat-containing protein ctxp80|
          Length = 716

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -1

Query: 502 DPARAGAQRRPLRGHLQHVLR 440
           +PARAGA    LRGH +HV+R
Sbjct: 670 NPARAGATPVSLRGHSEHVVR 690



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>MATK_PARAU (Q5YJY5) Maturase K (Intron maturase)|
          Length = 499

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -2

Query: 486 ERNGDRYEAIYSMYFGDYGHISLQGPYLTYEESYLAVTGGSGVFEGVYGQVKLNQIVFPF 307
           +RN   +  +Y+ Y  +Y  I L   +L  + SYL +T    +FE +Y   K+   V  F
Sbjct: 201 KRNPRFFLFLYNFYVCEYESIFL---FLRNKSSYLRLTSSGVLFERIYFYAKIEHFVEVF 257


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,354,539
Number of Sequences: 219361
Number of extensions: 1215541
Number of successful extensions: 3226
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3224
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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