>TMEM1_HUMAN (P48553) Transmembrane protein 1 (Epilepsy holoprosencephaly|
            candidate 1 protein) (EHOC-1) (GT334 protein)
          Length = 1259

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
 Frame = -3

Query: 485  FLPFSTDCLRVGQLVNMKWRVERLKDL-----EEASLSDDE-----ILYQVDANPQNWMV 336
            F P   +  R G L +++  + RL DL     +EA    DE     ++Y+V  N  NW V
Sbjct: 1066 FPPSGMEYCRTGSLCSLEVLITRLSDLLEVDKDEALTESDEHFSTKLMYEVVDNSSNWAV 1125

Query: 335  AGRKSGHISFSETQGSRIEIAVTCVPLVSGYVHPPQLGLPDV 210
             G+  G IS      +   + +  +PL +GY     L LPDV
Sbjct: 1126 CGKSCGVISMPVAARATHRVHMEVMPLFAGY-----LPLPDV 1162

>YQG4_CAEEL (Q09499) Putative serine/threonine-protein kinase C41C4.4 precursor|
           (EC 2.7.11.1)
          Length = 983

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -3

Query: 497 LAVGFLPFSTDCLRVGQLVNMKWRVERLKDLEEASLSDDEILYQVDANPQNWMVAGRKSG 318
           L  G  PF     R   +VN ++ + +L DL++ SL+DD I   ++  P + + A     
Sbjct: 731 LTSGTHPFGKSLHRQANIVNGEYTLNKLADLDDWSLADDLISSMLNVEPLHRLTADAVLN 790

Query: 317 HISF 306
           H  F
Sbjct: 791 HPFF 794

>DP2L_ARCFU (O28552) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)|
          Length = 1143

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 18/61 (29%), Positives = 35/61 (57%)
 Frame = -3

Query: 545 LFKISLKLKRPVLDPCLAVGFLPFSTDCLRVGQLVNMKWRVERLKDLEEASLSDDEILYQ 366
           +++I+   ++  LDP L+V          RV +L+N++   +R+ +LEE  LS + I ++
Sbjct: 40  IYRIAEAARKKGLDPELSVEIPIAKNMAERVEKLMNLQGLAKRIMELEEGGLSRELICFK 99

Query: 365 V 363
           V
Sbjct: 100 V 100

>Y623_DROME (Q9VFB7) Hypothetical protein CG6623|
          Length = 1145

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -3

Query: 380  EILYQVDANPQNWMVAGRKSGHISFSETQGSRIEIAVTCVPLVSGYVHPPQLGL 219
            +++Y+V  +   W V GR +G +S  +     I + V  +PL +G++  P + L
Sbjct: 1050 DLMYEVLNDQNLWAVCGRSAGVVSMKDVDSHSISLDV--MPLSTGFLPMPSIRL 1101

>VP4B_VARV (P33818) Major core protein P4b precursor (Virion core protein P4b)|
          Length = 644

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 190 QLIFASPTSGRPSCGGCTYPDTSGTHVTAISILDPCVSENEM 315
           +++FA P  G   C G T+ D+ GT+V   ++  P +    M
Sbjct: 420 RVVFAPPNIGYGRCSGVTHIDSLGTNVMGSAVHSPVIVNGAM 461

>ZFP90_MOUSE (Q61967) Zinc finger protein 90 (Zfp-90) (Zinc finger protein NK10)|
          Length = 636

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +3

Query: 93  NGTEVAHESSRYAVG---GAEGGRKHAHQVGTCRVAADIRIAYVGQA*LWRVYIPRHQR 260
           N  E  H+   Y+ G   GA+ GRKH H+   C           G+  LWR  +  HQR
Sbjct: 224 NKHEKIHKGDPYSNGTDQGAQSGRKH-HECADC-----------GKTFLWRTQLTEHQR 270

>VP4B_VACCC (P20643) Major core protein P4b precursor (Virion core protein P4b)|
          Length = 644

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 190 QLIFASPTSGRPSCGGCTYPDTSGTHVTAISILDPCVSENEM 315
           +++FA P  G   C G T+ D  GT+V   ++  P +    M
Sbjct: 420 RVVFAPPNIGYGRCSGVTHIDPLGTNVMGSAVHSPVIVNGAM 461

>SMBT2_MOUSE (Q5DTW2) Scm-like with four MBT domains protein 2|
          Length = 938

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
 Frame = -3

Query: 176 PHLVCVLPP-------TLSTSYCIPA*FMSHLC 99
           PH +C+LPP        ++  YC P  F++H C
Sbjct: 505 PHELCLLPPQMDSPVGAINAKYCCPQLFVNHRC 537

>VP4B_VACCV (P06440) Major core protein P4b precursor (Virion core protein P4b)|
          Length = 643

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 190 QLIFASPTSGRPSCGGCTYPDTSGTHVTAISILDPCVSENEM 315
           +++FA P  G   C G T+ D  GT+V   ++  P +    M
Sbjct: 420 RVVFAPPNIGYGRCSGVTHIDPLGTNVMGSAVHSPVIVNGAM 461

>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore|
            membrane protein of 121 kDa) (P145)
          Length = 1229

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 151  GGSTHTRWGPAGLQLIFASPTSGRPSCGGCT 243
            GG+TH+ +G       F +P S +P+ GG T
Sbjct: 1010 GGATHSAFGLKATASAFGAPASSQPAFGGST 1040

>TYPA_BACSU (O07631) GTP-binding protein typA/bipA homolog|
          Length = 612

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = -3

Query: 530 LKLKRPVLDPCLAVGFLPFSTDCLRVGQLVNMKWRVERLKDLEEASLSDDEILYQVDANP 351
           L++  P L     V   PF+    R G+ V  +   ERL+   +  +S   +  +  A+P
Sbjct: 302 LRIDEPTLQMTFVVNNSPFAG---REGKYVTARKIEERLQSQLQTDVS---LRVEPTASP 355

Query: 350 QNWMVAGRKSGHIS 309
             W+V+GR   H+S
Sbjct: 356 DAWVVSGRGELHLS 369


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,236,912
Number of Sequences: 219361
Number of extensions: 2734027
Number of successful extensions: 7082
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7078
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)