ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags34f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 133 8e-28
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 133 8e-28
3gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome... 133 8e-28
4dbj|AK121428.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 8e-28
5dbj|AK101307.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 8e-28
6dbj|AK066051.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 8e-28
7gb|BT016502.1| Zea mays clone Contig335 mRNA sequence 127 5e-26
8gb|AY105818.1| Zea mays PCO146511 mRNA sequence 127 5e-26
9ref|NM_131757.1| Danio rerio dishevelled, dsh homolog 3 (Drosoph... 42 2.3
10ref|XM_676463.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 2.3
11emb|AL158196.24| Human DNA sequence from clone RP11-90M2 on chro... 42 2.3
12emb|AJ622826.1| Emericella nidulans kipA gene for kinesin-like p... 42 2.3
13gb|BC044353.1| Danio rerio dishevelled, dsh homolog 3 (Drosophil... 42 2.3
14gb|BC098888.1| Danio rerio dishevelled, dsh homolog 3 (Drosophil... 42 2.3
15gb|AC017068.7| Homo sapiens BAC clone RP11-380D23 from 4, comple... 42 2.3
16dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
17dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
18dbj|AK064380.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
19emb|CT571256.7| Mouse DNA sequence from clone RP24-135B13 on chr... 42 2.3
20dbj|AB041734.1| Danio rerio orf mRNA, complete cds 42 2.3
21ref|XM_858780.1| PREDICTED: Canis familiaris similar to DEAH (As... 40 9.2
22ref|XM_858759.1| PREDICTED: Canis familiaris similar to DEAH (As... 40 9.2
23ref|XM_858672.1| PREDICTED: Canis familiaris similar to DEAH (As... 40 9.2
24ref|XM_858649.1| PREDICTED: Canis familiaris similar to DEAH (As... 40 9.2
25ref|XM_858624.1| PREDICTED: Canis familiaris similar to DEAH (As... 40 9.2
26ref|XM_858604.1| PREDICTED: Canis familiaris similar to DEAH (As... 40 9.2
27ref|XM_533844.2| PREDICTED: Canis familiaris similar to DEAH (As... 40 9.2
28emb|AL358612.9| Human DNA sequence from clone RP11-435M3 on chro... 40 9.2
29gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 9.2
30emb|BX546466.6| Zebrafish DNA sequence from clone DKEY-43N10 in ... 40 9.2
31gb|AC160148.7| Mus musculus 6 BAC RP23-384N6 (Roswell Park Cance... 40 9.2
32ref|NM_059749.3| Caenorhabditis elegans F27D4.6 (F27D4.6) mRNA, ... 40 9.2
33emb|Y10112.2|GHOMEGA6 Gossypium hirsutum mRNA for omega-6 desatu... 40 9.2
34gb|AC155848.6| Mus musculus 6 BAC RP24-534P19 (Roswell Park Canc... 40 9.2
35emb|Z79695.1|CEF27D4 Caenorhabditis elegans Cosmid F27D4, comple... 40 9.2
36dbj|AB078228.1| Hapalemur griseus griseus Hagg-DRB gene for MHC ... 40 9.2 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  133 bits (67), Expect = 8e-28
 Identities = 163/195 (83%)
 Strand = Plus / Minus

                                                                           
Query: 359     tcatgcgatccttatcgtccaatcatctacgactcgaacattgggcctcctgactgttgg 418
               |||||| |||||||| |||||||||||||| ||||||||||||||| | |  ||||||||
Sbjct: 6099137 tcatgctatccttatagtccaatcatctacaactcgaacattgggctttcgtactgttgg 6099078

                                                                           
Query: 419     tgcaacagactttgaaccactccttaaactaatcggtcctagatcaatttccacttcttg 478
               |||||||||  | ||||| || | || |||||| || || |  ||||| |||||||| ||
Sbjct: 6099077 tgcaacagagctcgaaccgcttcgtagactaataggccccaattcaatatccacttcatg 6099018

                                                                           
Query: 479     gttcccaggttcaatgatggccttctttgctcccgatggtaacccaagcactataattct 538
                || ||||||||||  || |||||||||| |||||||| || |||||| | |||||||||
Sbjct: 6099017 atttccaggttcaacaatagccttctttgatcccgatgataccccaaggattataattct 6098958

                              
Query: 539     ttcaatcacacactc 553
               ||||||||| |||||
Sbjct: 6098957 ttcaatcacgcactc 6098943



 Score =  125 bits (63), Expect = 2e-25
 Identities = 78/83 (93%)
 Strand = Plus / Minus

                                                                           
Query: 591     atattgatcgaagttagcttattgtctgcaaatacaaaacgccgatggatgaatgcccct 650
               ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 6098905 atattcatggaagttagcttattgtctgcaaatacaaaacgacgatggatgaatgcccct 6098846

                                      
Query: 651     tgctggtaatcataacttttccc 673
               ||||| ||||||||||| |||||
Sbjct: 6098845 tgctgataatcataactcttccc 6098823
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  133 bits (67), Expect = 8e-28
 Identities = 163/195 (83%)
 Strand = Plus / Minus

                                                                           
Query: 359     tcatgcgatccttatcgtccaatcatctacgactcgaacattgggcctcctgactgttgg 418
               |||||| |||||||| |||||||||||||| ||||||||||||||| | |  ||||||||
Sbjct: 6098350 tcatgctatccttatagtccaatcatctacaactcgaacattgggctttcgtactgttgg 6098291

                                                                           
Query: 419     tgcaacagactttgaaccactccttaaactaatcggtcctagatcaatttccacttcttg 478
               |||||||||  | ||||| || | || |||||| || || |  ||||| |||||||| ||
Sbjct: 6098290 tgcaacagagctcgaaccgcttcgtagactaataggccccaattcaatatccacttcatg 6098231

                                                                           
Query: 479     gttcccaggttcaatgatggccttctttgctcccgatggtaacccaagcactataattct 538
                || ||||||||||  || |||||||||| |||||||| || |||||| | |||||||||
Sbjct: 6098230 atttccaggttcaacaatagccttctttgatcccgatgataccccaaggattataattct 6098171

                              
Query: 539     ttcaatcacacactc 553
               ||||||||| |||||
Sbjct: 6098170 ttcaatcacgcactc 6098156



 Score =  125 bits (63), Expect = 2e-25
 Identities = 78/83 (93%)
 Strand = Plus / Minus

                                                                           
Query: 591     atattgatcgaagttagcttattgtctgcaaatacaaaacgccgatggatgaatgcccct 650
               ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 6098118 atattcatggaagttagcttattgtctgcaaatacaaaacgacgatggatgaatgcccct 6098059

                                      
Query: 651     tgctggtaatcataacttttccc 673
               ||||| ||||||||||| |||||
Sbjct: 6098058 tgctgataatcataactcttccc 6098036
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>gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0090D11, complete sequence
          Length = 174865

 Score =  133 bits (67), Expect = 8e-28
 Identities = 163/195 (83%)
 Strand = Plus / Minus

                                                                         
Query: 359   tcatgcgatccttatcgtccaatcatctacgactcgaacattgggcctcctgactgttgg 418
             |||||| |||||||| |||||||||||||| ||||||||||||||| | |  ||||||||
Sbjct: 92613 tcatgctatccttatagtccaatcatctacaactcgaacattgggctttcgtactgttgg 92554

                                                                         
Query: 419   tgcaacagactttgaaccactccttaaactaatcggtcctagatcaatttccacttcttg 478
             |||||||||  | ||||| || | || |||||| || || |  ||||| |||||||| ||
Sbjct: 92553 tgcaacagagctcgaaccgcttcgtagactaataggccccaattcaatatccacttcatg 92494

                                                                         
Query: 479   gttcccaggttcaatgatggccttctttgctcccgatggtaacccaagcactataattct 538
              || ||||||||||  || |||||||||| |||||||| || |||||| | |||||||||
Sbjct: 92493 atttccaggttcaacaatagccttctttgatcccgatgataccccaaggattataattct 92434

                            
Query: 539   ttcaatcacacactc 553
             ||||||||| |||||
Sbjct: 92433 ttcaatcacgcactc 92419



 Score =  125 bits (63), Expect = 2e-25
 Identities = 78/83 (93%)
 Strand = Plus / Minus

                                                                         
Query: 591   atattgatcgaagttagcttattgtctgcaaatacaaaacgccgatggatgaatgcccct 650
             ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 92381 atattcatggaagttagcttattgtctgcaaatacaaaacgacgatggatgaatgcccct 92322

                                    
Query: 651   tgctggtaatcataacttttccc 673
             ||||| ||||||||||| |||||
Sbjct: 92321 tgctgataatcataactcttccc 92299
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>dbj|AK121428.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136H14, full
            insert sequence
          Length = 1605

 Score =  133 bits (67), Expect = 8e-28
 Identities = 163/195 (83%)
 Strand = Plus / Minus

                                                                        
Query: 359  tcatgcgatccttatcgtccaatcatctacgactcgaacattgggcctcctgactgttgg 418
            |||||| |||||||| |||||||||||||| ||||||||||||||| | |  ||||||||
Sbjct: 1328 tcatgctatccttatagtccaatcatctacaactcgaacattgggctttcgtactgttgg 1269

                                                                        
Query: 419  tgcaacagactttgaaccactccttaaactaatcggtcctagatcaatttccacttcttg 478
            |||||||||  | ||||| || | || |||||| || || |  ||||| |||||||| ||
Sbjct: 1268 tgcaacagagctcgaaccgcttcgtagactaataggccccaattcaatatccacttcatg 1209

                                                                        
Query: 479  gttcccaggttcaatgatggccttctttgctcccgatggtaacccaagcactataattct 538
             || ||||||||||  || |||||||||| |||||||| || |||||| | |||||||||
Sbjct: 1208 atttccaggttcaacaatagccttctttgatcccgatgataccccaaggattataattct 1149

                           
Query: 539  ttcaatcacacactc 553
            ||||||||| |||||
Sbjct: 1148 ttcaatcacgcactc 1134



 Score =  125 bits (63), Expect = 2e-25
 Identities = 78/83 (93%)
 Strand = Plus / Minus

                                                                        
Query: 591  atattgatcgaagttagcttattgtctgcaaatacaaaacgccgatggatgaatgcccct 650
            ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1096 atattcatggaagttagcttattgtctgcaaatacaaaacgacgatggatgaatgcccct 1037

                                   
Query: 651  tgctggtaatcataacttttccc 673
            ||||| ||||||||||| |||||
Sbjct: 1036 tgctgataatcataactcttccc 1014
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>dbj|AK101307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033M11, full
           insert sequence
          Length = 889

 Score =  133 bits (67), Expect = 8e-28
 Identities = 163/195 (83%)
 Strand = Plus / Minus

                                                                       
Query: 359 tcatgcgatccttatcgtccaatcatctacgactcgaacattgggcctcctgactgttgg 418
           |||||| |||||||| |||||||||||||| ||||||||||||||| | |  ||||||||
Sbjct: 671 tcatgctatccttatagtccaatcatctacaactcgaacattgggctttcgtactgttgg 612

                                                                       
Query: 419 tgcaacagactttgaaccactccttaaactaatcggtcctagatcaatttccacttcttg 478
           |||||||||  | ||||| || | || |||||| || || |  ||||| |||||||| ||
Sbjct: 611 tgcaacagagctcgaaccgcttcgtagactaataggccccaattcaatatccacttcatg 552

                                                                       
Query: 479 gttcccaggttcaatgatggccttctttgctcccgatggtaacccaagcactataattct 538
            || ||||||||||  || |||||||||| |||||||| || |||||| | |||||||||
Sbjct: 551 atttccaggttcaacaatagccttctttgatcccgatgataccccaaggattataattct 492

                          
Query: 539 ttcaatcacacactc 553
           ||||||||| |||||
Sbjct: 491 ttcaatcacgcactc 477



 Score =  125 bits (63), Expect = 2e-25
 Identities = 78/83 (93%)
 Strand = Plus / Minus

                                                                       
Query: 591 atattgatcgaagttagcttattgtctgcaaatacaaaacgccgatggatgaatgcccct 650
           ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 439 atattcatggaagttagcttattgtctgcaaatacaaaacgacgatggatgaatgcccct 380

                                  
Query: 651 tgctggtaatcataacttttccc 673
           ||||| ||||||||||| |||||
Sbjct: 379 tgctgataatcataactcttccc 357
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>dbj|AK066051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051B02, full
            insert sequence
          Length = 2875

 Score =  133 bits (67), Expect = 8e-28
 Identities = 163/195 (83%)
 Strand = Plus / Minus

                                                                        
Query: 359  tcatgcgatccttatcgtccaatcatctacgactcgaacattgggcctcctgactgttgg 418
            |||||| |||||||| |||||||||||||| ||||||||||||||| | |  ||||||||
Sbjct: 2595 tcatgctatccttatagtccaatcatctacaactcgaacattgggctttcgtactgttgg 2536

                                                                        
Query: 419  tgcaacagactttgaaccactccttaaactaatcggtcctagatcaatttccacttcttg 478
            |||||||||  | ||||| || | || |||||| || || |  ||||| |||||||| ||
Sbjct: 2535 tgcaacagagctcgaaccgcttcgtagactaataggccccaattcaatatccacttcatg 2476

                                                                        
Query: 479  gttcccaggttcaatgatggccttctttgctcccgatggtaacccaagcactataattct 538
             || ||||||||||  || |||||||||| |||||||| || |||||| | |||||||||
Sbjct: 2475 atttccaggttcaacaatagccttctttgatcccgatgataccccaaggattataattct 2416

                           
Query: 539  ttcaatcacacactc 553
            ||||||||| |||||
Sbjct: 2415 ttcaatcacgcactc 2401



 Score =  125 bits (63), Expect = 2e-25
 Identities = 78/83 (93%)
 Strand = Plus / Minus

                                                                        
Query: 591  atattgatcgaagttagcttattgtctgcaaatacaaaacgccgatggatgaatgcccct 650
            ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2363 atattcatggaagttagcttattgtctgcaaatacaaaacgacgatggatgaatgcccct 2304

                                   
Query: 651  tgctggtaatcataacttttccc 673
            ||||| ||||||||||| |||||
Sbjct: 2303 tgctgataatcataactcttccc 2281
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>gb|BT016502.1| Zea mays clone Contig335 mRNA sequence
          Length = 1310

 Score =  127 bits (64), Expect = 5e-26
 Identities = 85/92 (92%)
 Strand = Plus / Minus

                                                                       
Query: 582 tcaggcgcaatattgatcgaagttagcttattgtctgcaaatacaaaacgccgatggatg 641
           |||||| |||||||||  ||||||||||||||||||||||| ||||| || ||||| |||
Sbjct: 805 tcaggcccaatattgaatgaagttagcttattgtctgcaaagacaaatcggcgatgaatg 746

                                           
Query: 642 aatgccccttgctggtaatcataacttttccc 673
           ||||||||||||||||||||||||||||||||
Sbjct: 745 aatgccccttgctggtaatcataacttttccc 714



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 176/221 (79%)
 Strand = Plus / Minus

                                                                        
Query: 327  acatcaggctccaggtgtgaatgggctgcatatcatgcgatccttatcgtccaatcatct 386
            |||||||| ||||| ||||||||| || | | | |||| |||||||| ||||||   |||
Sbjct: 1057 acatcaggatccagatgtgaatggcctaccttttatgctatccttattgtccaactgtct 998

                                                                        
Query: 387  acgactcgaacattgggcctcctgactgttggtgcaacagactttgaaccactccttaaa 446
             | |  |||||||||||||||| || |||||| || || |   | |||||||||||||||
Sbjct: 997  gcaatgcgaacattgggcctccggattgttggggcgactgggctggaaccactccttaaa 938

                                                                        
Query: 447  ctaatcggtcctagatcaatttccacttcttggttcccaggttcaatgatggccttcttt 506
            ||||| || |||   |||||||| | |||||| || ||||| ||||| || |||||||| 
Sbjct: 937  ctaattggccctgattcaatttctagttcttgatttccaggctcaataatagccttcttc 878

                                                     
Query: 507  gctcccgatggtaacccaagcactataattctttcaatcac 547
             |||| ||| |||| || || | ||||||||||||||||||
Sbjct: 877  actccggatcgtaaaccgaggattataattctttcaatcac 837
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>gb|AY105818.1| Zea mays PCO146511 mRNA sequence
          Length = 2124

 Score =  127 bits (64), Expect = 5e-26
 Identities = 85/92 (92%)
 Strand = Plus / Minus

                                                                        
Query: 582  tcaggcgcaatattgatcgaagttagcttattgtctgcaaatacaaaacgccgatggatg 641
            |||||| |||||||||  ||||||||||||||||||||||| ||||| || ||||| |||
Sbjct: 1624 tcaggcccaatattgaatgaagttagcttattgtctgcaaagacaaatcggcgatgaatg 1565

                                            
Query: 642  aatgccccttgctggtaatcataacttttccc 673
            ||||||||||||||||||||||||||||||||
Sbjct: 1564 aatgccccttgctggtaatcataacttttccc 1533



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 176/224 (78%), Gaps = 1/224 (0%)
 Strand = Plus / Minus

                                                                        
Query: 325  agacatcaggctccaggtgtgaatgggctgcatatcatgcgatccttatcgtccaatcat 384
            |||||||||| ||||| ||||||||| || | | | |||| |||||||| ||||||   |
Sbjct: 1879 agacatcaggatccagatgtgaatggcctaccttttatgctatccttatagtccaactgt 1820

                                                                        
Query: 385  ctacgactcgaacattgggcctcctgactgttggtgcaacagactttgaaccactcctta 444
            || | |  | |||||||||||||| || |||||| || || |   | |||||||||||||
Sbjct: 1819 ctgcaatgcaaacattgggcctccggattgttggcgcgactgggctggaaccactcctta 1760

                                                                        
Query: 445  aactaatcggtcctagatcaatttccacttcttg-gttcccaggttcaatgatggccttc 503
            ||||||| || |||   |||||||| | ||||||  || |||||  |||| || ||||||
Sbjct: 1759 aactaattggccctgattcaatttctagttcttgatttgccaggcccaataatagccttc 1700

                                                        
Query: 504  tttgctcccgatggtaacccaagcactataattctttcaatcac 547
            ||  |||| ||| |||| || || | ||||||||||||||||||
Sbjct: 1699 ttcactccggatcgtaaaccgaggattataattctttcaatcac 1656
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>ref|NM_131757.1| Danio rerio dishevelled, dsh homolog 3 (Drosophila) (dvl3), mRNA
          Length = 2437

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 335  ctccaggtgtgaatgggctgc 355
            |||||||||||||||||||||
Sbjct: 2009 ctccaggtgtgaatgggctgc 1989
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>ref|XM_676463.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8286.2), mRNA
          Length = 2670

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 360  catgcgatccttatcgtccaa 380
            |||||||||||||||||||||
Sbjct: 2343 catgcgatccttatcgtccaa 2323
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>emb|AL158196.24| Human DNA sequence from clone RP11-90M2 on chromosome 13 Contains gene
              FLJ10956, the gene for HSPC126 protein (DRIP36), a novel
              gene similar to polymerase (RNA) II (DNA directed)
              polypeptide K, 7.0kDa (POLR2K), a novel gene and two CpG
              islands, complete sequence
          Length = 152594

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 422    aacagactttgaaccactcct 442
              |||||||||||||||||||||
Sbjct: 139644 aacagactttgaaccactcct 139664
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>emb|AJ622826.1| Emericella nidulans kipA gene for kinesin-like protein, exons 1-2
          Length = 6254

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 360  catgcgatccttatcgtccaa 380
            |||||||||||||||||||||
Sbjct: 3594 catgcgatccttatcgtccaa 3574
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>gb|BC044353.1| Danio rerio dishevelled, dsh homolog 3 (Drosophila), mRNA (cDNA clone
            MGC:55261 IMAGE:3816155), complete cds
          Length = 2445

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 335  ctccaggtgtgaatgggctgc 355
            |||||||||||||||||||||
Sbjct: 2012 ctccaggtgtgaatgggctgc 1992
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>gb|BC098888.1| Danio rerio dishevelled, dsh homolog 3 (Drosophila), mRNA (cDNA clone
            MGC:114008 IMAGE:2601939), complete cds
          Length = 2436

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 335  ctccaggtgtgaatgggctgc 355
            |||||||||||||||||||||
Sbjct: 2003 ctccaggtgtgaatgggctgc 1983
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>gb|AC017068.7| Homo sapiens BAC clone RP11-380D23 from 4, complete sequence
          Length = 201627

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 95    tacatcatacctggcacacaa 115
             |||||||||||||||||||||
Sbjct: 60258 tacatcatacctggcacacaa 60278
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 488     ttcaatgatggccttctttgc 508
               |||||||||||||||||||||
Sbjct: 8553841 ttcaatgatggccttctttgc 8553861
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>dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0079G12
          Length = 139796

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 488   ttcaatgatggccttctttgc 508
             |||||||||||||||||||||
Sbjct: 75051 ttcaatgatggccttctttgc 75071
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>dbj|AK064380.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-D12, full
           insert sequence
          Length = 1707

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 488 ttcaatgatggccttctttgc 508
           |||||||||||||||||||||
Sbjct: 668 ttcaatgatggccttctttgc 648
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>emb|CT571256.7| Mouse DNA sequence from clone RP24-135B13 on chromosome 13, complete
              sequence
          Length = 183340

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 471    acttcttggttcccaggttca 491
              |||||||||||||||||||||
Sbjct: 115242 acttcttggttcccaggttca 115262
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>dbj|AB041734.1| Danio rerio orf mRNA, complete cds
          Length = 2489

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 335  ctccaggtgtgaatgggctgc 355
            |||||||||||||||||||||
Sbjct: 2061 ctccaggtgtgaatgggctgc 2041
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>ref|XM_858780.1| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box
            polypeptide 30 isoform 3, transcript variant 10
            (LOC476639), mRNA
          Length = 3682

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  cagagaacatttacgaggct 273
            ||||||||||||||||||||
Sbjct: 2978 cagagaacatttacgaggct 2997
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>ref|XM_858759.1| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box
            polypeptide 30 isoform 3, transcript variant 9
            (LOC476639), mRNA
          Length = 3769

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  cagagaacatttacgaggct 273
            ||||||||||||||||||||
Sbjct: 3065 cagagaacatttacgaggct 3084
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>ref|XM_858672.1| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box
            polypeptide 30 isoform 3, transcript variant 5
            (LOC476639), mRNA
          Length = 3905

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  cagagaacatttacgaggct 273
            ||||||||||||||||||||
Sbjct: 3201 cagagaacatttacgaggct 3220
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>ref|XM_858649.1| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box
            polypeptide 30 isoform 3, transcript variant 4
            (LOC476639), mRNA
          Length = 3824

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  cagagaacatttacgaggct 273
            ||||||||||||||||||||
Sbjct: 3120 cagagaacatttacgaggct 3139
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>ref|XM_858624.1| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box
            polypeptide 30 isoform 3, transcript variant 3
            (LOC476639), mRNA
          Length = 3722

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  cagagaacatttacgaggct 273
            ||||||||||||||||||||
Sbjct: 3018 cagagaacatttacgaggct 3037
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>ref|XM_858604.1| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box
            polypeptide 30 isoform 3, transcript variant 2
            (LOC476639), mRNA
          Length = 3742

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  cagagaacatttacgaggct 273
            ||||||||||||||||||||
Sbjct: 3038 cagagaacatttacgaggct 3057
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>ref|XM_533844.2| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box
            polypeptide 30 isoform 3, transcript variant 1
            (LOC476639), mRNA
          Length = 3876

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  cagagaacatttacgaggct 273
            ||||||||||||||||||||
Sbjct: 3172 cagagaacatttacgaggct 3191
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>emb|AL358612.9| Human DNA sequence from clone RP11-435M3 on chromosome 10 Contains the
             5' end of the MYO3A gene for myosin IIIA, a novel gene and
             a CpG island, complete sequence
          Length = 174021

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   aaaattggaagtacaagcag 191
             ||||||||||||||||||||
Sbjct: 75993 aaaattggaagtacaagcag 76012
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 290    cattacccaagtttatggcctgac 313
              ||||||||| ||||||||||||||
Sbjct: 252420 cattacccacgtttatggcctgac 252443
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>emb|BX546466.6| Zebrafish DNA sequence from clone DKEY-43N10 in linkage group 23,
             complete sequence
          Length = 109069

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    catcatacctggcacacaaa 116
             ||||||||||||||||||||
Sbjct: 82341 catcatacctggcacacaaa 82360
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>gb|AC160148.7| Mus musculus 6 BAC RP23-384N6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 207306

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 471   acttcttggttcccaggttc 490
             ||||||||||||||||||||
Sbjct: 23581 acttcttggttcccaggttc 23562
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>ref|NM_059749.3| Caenorhabditis elegans F27D4.6 (F27D4.6) mRNA, complete cds
          Length = 3724

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 551  ctcagttgaataaaccttct 570
            ||||||||||||||||||||
Sbjct: 1102 ctcagttgaataaaccttct 1121
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>emb|Y10112.2|GHOMEGA6 Gossypium hirsutum mRNA for omega-6 desaturase
          Length = 1422

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 609  ttattgtctgcaaatacaaa 628
            ||||||||||||||||||||
Sbjct: 1363 ttattgtctgcaaatacaaa 1344
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>gb|AC155848.6| Mus musculus 6 BAC RP24-534P19 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 202657

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 471    acttcttggttcccaggttc 490
              ||||||||||||||||||||
Sbjct: 195852 acttcttggttcccaggttc 195833
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>emb|Z79695.1|CEF27D4 Caenorhabditis elegans Cosmid F27D4, complete sequence
          Length = 36150

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 551   ctcagttgaataaaccttct 570
             ||||||||||||||||||||
Sbjct: 31382 ctcagttgaataaaccttct 31401
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>dbj|AB078228.1| Hapalemur griseus griseus Hagg-DRB gene for MHC class II antigen,
          exon 2, partial cds, allele:Hagg-DRB*Wa01
          Length = 202

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 3  ctggtgagattcatctacaa 22
          ||||||||||||||||||||
Sbjct: 17 ctggtgagattcatctacaa 36


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,479,004
Number of Sequences: 3902068
Number of extensions: 5479004
Number of successful extensions: 90403
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90226
Number of HSP's gapped (non-prelim): 168
length of query: 673
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 650
effective length of database: 17,143,297,704
effective search space: 11143143507600
effective search space used: 11143143507600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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