>ERGI1_BRARE (Q4V8Y6) Endoplasmic reticulum-Golgi intermediate compartment|
           protein 1 (ER-Golgi intermediate compartment 32 kDa
           protein) (ERGIC-32)
          Length = 290

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 25/54 (46%), Positives = 36/54 (66%)
 Frame = -3

Query: 514 PAVYFLYDLSPITVTIREERXNFXHFINRLCAVLGGTFAMTGMLDRWMYRIIES 353
           PA++F YDLSPITV   E R  F  FI  +CA++GGTF + G++D  ++   E+
Sbjct: 227 PAIWFRYDLSPITVKYTERRRPFYRFITTICAIIGGTFTVAGIIDSCIFTASEA 280

>ERGI1_XENLA (Q6NS19) Endoplasmic reticulum-Golgi intermediate compartment|
           protein 1 (ER-Golgi intermediate compartment 32 kDa
           protein) (ERGIC-32)
          Length = 290

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 25/54 (46%), Positives = 36/54 (66%)
 Frame = -3

Query: 514 PAVYFLYDLSPITVTIREERXNFXHFINRLCAVLGGTFAMTGMLDRWMYRIIES 353
           PA++F YDLSPITV   E R     FI  +CA++GGTF + G+LD +++   E+
Sbjct: 227 PAIWFRYDLSPITVKYTERRQPMYRFITTVCAIIGGTFTVAGILDSFIFTASEA 280

>ERGI1_MOUSE (Q9DC16) Endoplasmic reticulum-Golgi intermediate compartment|
           protein 1 (ER-Golgi intermediate compartment 32 kDa
           protein) (ERGIC-32)
          Length = 290

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 25/54 (46%), Positives = 35/54 (64%)
 Frame = -3

Query: 514 PAVYFLYDLSPITVTIREERXNFXHFINRLCAVLGGTFAMTGMLDRWMYRIIES 353
           PA++F YDLSPITV   E R     FI  +CA++GGTF + G+LD  ++   E+
Sbjct: 227 PAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEA 280

>ERGI1_HUMAN (Q969X5) Endoplasmic reticulum-Golgi intermediate compartment|
           protein 1 (ER-Golgi intermediate compartment 32 kDa
           protein) (ERGIC-32)
          Length = 290

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 25/54 (46%), Positives = 35/54 (64%)
 Frame = -3

Query: 514 PAVYFLYDLSPITVTIREERXNFXHFINRLCAVLGGTFAMTGMLDRWMYRIIES 353
           PA++F YDLSPITV   E R     FI  +CA++GGTF + G+LD  ++   E+
Sbjct: 227 PAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEA 280

>SDB84_MOUSE (Q9CQE7) Serologically defined breast cancer antigen NY-BR-84|
           homolog
          Length = 383

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 22/59 (37%), Positives = 38/59 (64%)
 Frame = -3

Query: 526 DRSWPAVYFLYDLSPITVTIREERXNFXHFINRLCAVLGGTFAMTGMLDRWMYRIIESI 350
           D+  P V+ LY+LSP+ V + E+  +F HF+  +CA++GG F + G++D  +Y    +I
Sbjct: 315 DQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAI 373

>SDB84_HUMAN (Q9Y282) Serologically defined breast cancer antigen NY-BR-84|
          Length = 383

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 22/59 (37%), Positives = 38/59 (64%)
 Frame = -3

Query: 526 DRSWPAVYFLYDLSPITVTIREERXNFXHFINRLCAVLGGTFAMTGMLDRWMYRIIESI 350
           D+  P V+ LY+LSP+ V + E+  +F HF+  +CA++GG F + G++D  +Y    +I
Sbjct: 315 DQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAI 373

>YAI8_SCHPO (Q09895) Hypothetical protein C24B11.08c in chromosome I|
          Length = 390

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = -3

Query: 514 PAVYFLYDLSPITVTIREERXN-FXHFINRLCAVLGGTFAMTGMLDRWMYRI 362
           P V+F +D+SP+ V  R+ R N F  F++ + A+LGG   +   +DR  Y +
Sbjct: 333 PGVWFQFDISPMRVIERQVRGNTFGGFLSNVLALLGGCVTLASFVDRGYYEV 384

>Y022_NPVOP (O10281) Hypothetical 43.4 kDa protein (ORF20)|
          Length = 382

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +2

Query: 278 VVSSLLRSAWDARLPXSTSRF*----AQDRLNDPVHPSVEHSCHCKCTPKNCTEAVYEMX 445
           V ++  R +WD  L   + RF     A+D  N+ +  +  +    +C P  CT+  Y   
Sbjct: 202 VATNTFRRSWDELLEDGSRRFEMRCNARDNNNNLMFVNPRNPL--ECLPNVCTDVNYVHS 259

Query: 446 EVPSFFSDGDCD 481
            V   F  G+CD
Sbjct: 260 TVRPVFESGECD 271

>Y022_NPVAC (P41427) Hypothetical 43.8 kDa protein in EGT-IAP1 intergenic|
           region (ORF 8/6)
          Length = 382

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
 Frame = +2

Query: 278 VVSSLLRSAWDARLPXSTSRF*----AQDRLND-----PVHPSVEHSCHCKCTPKNCTEA 430
           V ++  R +WD  L   T RF     A+D  N+     P++P        +C P  CT  
Sbjct: 202 VTTNTFRRSWDELLEDGTRRFEMRCNARDNNNNLMFVNPLNP-------LECLPNVCTNV 254

Query: 431 VYEMXEVPSFFSDGDCD 481
                 V   F  G+CD
Sbjct: 255 SNVHTSVRPVFETGECD 271

>CKX4_ARATH (Q9FUJ2) Cytokinin dehydrogenase 4 precursor (EC 1.5.99.12)|
           (Cytokinin oxidase 4) (CKO 4) (AtCKX4)
          Length = 524

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 141 IRLKPYLLSY-RCMDWTKHEGPQGGD 215
           I++K YL+ Y R  DW KH GP+  D
Sbjct: 477 IKIKEYLMHYTRKEDWVKHFGPKWDD 502


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,285,724
Number of Sequences: 219361
Number of extensions: 1266163
Number of successful extensions: 2280
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2279
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)