ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33p09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196117.1| Oryza sativa (japonica cultivar-group) putative... 72 1e-09
2gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome... 72 1e-09
3gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar N... 72 1e-09
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
5dbj|AK119798.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
6dbj|AK070069.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 72 1e-09
8gb|AY106216.1| Zea mays PCO144716 mRNA sequence 52 0.001
9gb|AC116365.2| Homo sapiens chromosome 5 clone RP11-797O11, comp... 42 1.0
10gb|AE001434.1| Plasmodium falciparum 3D7 chromosome 2 section 71... 40 4.1
11ref|XM_452223.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C00649g ... 40 4.1
12ref|XM_961214.1| Plasmodium falciparum 3D7 erythrocyte membrane ... 40 4.1
13emb|CR391949.7| Zebrafish DNA sequence from clone CH211-149B20 i... 40 4.1
14gb|AE014829.1| Plasmodium falciparum 3D7 chromosome 10 section 1... 40 4.1
15emb|CR382401.1| Plasmodium falciparum chromosome 6, complete seq... 40 4.1
16emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 4.1
17emb|AL929359.1|PFA929359 Plasmodium falciparum strain 3D7, chrom... 40 4.1
18emb|AL929351.1|PFA929351 Plasmodium falciparum strain 3D7, chrom... 40 4.1
19emb|AL031744.8|PFMAL1P1 Plasmodium falciparum DNA from MAL1P1, c... 40 4.1
20gb|AC010683.10| Homo sapiens BAC clone RP11-364M6 from 4, comple... 40 4.1
21dbj|AB016605.1| Bombyx mori gene for peptidoglycan recognition p... 40 4.1
22gb|U67959.1|PFU67959 Plasmodium falciparum FCR3-varT11-1 gene, p... 40 4.1
23gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 4.1
24gb|U82498.1|PFU82498 Plasmodium falciparum PCR fragment 2 Pf60 m... 40 4.1
25gb|U82494.1|PFU82494 Plasmodium falciparum PCR fragment 14 Pf60 ... 40 4.1
26gb|L40603.1|PFADD2D Plasmodium falciparum (strain Dd2, clone LT1... 40 4.1 
>ref|NM_196117.1| Oryza sativa (japonica cultivar-group) putative Pollen specific
           protein C13 precursor (OJ1208D02.12), mRNA
          Length = 519

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 205 acgcggtcgtcgacctcctcgtacatcttgaggatctgcgcgcatgcagccagaggggtg 264
           ||||||||||| || |||||||||||||||||||| || ||||| ||||| ||||| |  
Sbjct: 515 acgcggtcgtccacttcctcgtacatcttgaggatttgtgcgcacgcagcaagaggagca 456

                                           
Query: 265 tccttctcaaaccccagagcattagccaaccg 296
           |||||||  || |||||||| || ||||||||
Sbjct: 455 tccttctggaagcccagagcgttcgccaaccg 424
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>gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1208D02,
             complete sequence
          Length = 131922

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                         
Query: 205   acgcggtcgtcgacctcctcgtacatcttgaggatctgcgcgcatgcagccagaggggtg 264
             ||||||||||| || |||||||||||||||||||| || ||||| ||||| ||||| |  
Sbjct: 18427 acgcggtcgtccacttcctcgtacatcttgaggatttgtgcgcacgcagcaagaggagca 18368

                                             
Query: 265   tccttctcaaaccccagagcattagccaaccg 296
             |||||||  || |||||||| || ||||||||
Sbjct: 18367 tccttctggaagcccagagcgttcgccaaccg 18336
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>gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
             OJ1208D02 from chromosome 10, complete sequence
          Length = 120132

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                         
Query: 205   acgcggtcgtcgacctcctcgtacatcttgaggatctgcgcgcatgcagccagaggggtg 264
             ||||||||||| || |||||||||||||||||||| || ||||| ||||| ||||| |  
Sbjct: 78559 acgcggtcgtccacttcctcgtacatcttgaggatttgtgcgcacgcagcaagaggagca 78500

                                             
Query: 265   tccttctcaaaccccagagcattagccaaccg 296
             |||||||  || |||||||| || ||||||||
Sbjct: 78499 tccttctggaagcccagagcgttcgccaaccg 78468
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                            
Query: 205      acgcggtcgtcgacctcctcgtacatcttgaggatctgcgcgcatgcagccagaggggtg 264
                ||||||||||| || |||||||||||||||||||| || ||||| ||||| ||||| |  
Sbjct: 11210439 acgcggtcgtccacttcctcgtacatcttgaggatttgtgcgcacgcagcaagaggagca 11210380

                                                
Query: 265      tccttctcaaaccccagagcattagccaaccg 296
                |||||||  || |||||||| || ||||||||
Sbjct: 11210379 tccttctggaagcccagagcgttcgccaaccg 11210348
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>dbj|AK119798.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-H05, full
           insert sequence
          Length = 844

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 205 acgcggtcgtcgacctcctcgtacatcttgaggatctgcgcgcatgcagccagaggggtg 264
           ||||||||||| || |||||||||||||||||||| || ||||| ||||| ||||| |  
Sbjct: 621 acgcggtcgtccacttcctcgtacatcttgaggatttgtgcgcacgcagcaagaggagca 562

                                           
Query: 265 tccttctcaaaccccagagcattagccaaccg 296
           |||||||  || |||||||| || ||||||||
Sbjct: 561 tccttctggaagcccagagcgttcgccaaccg 530
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>dbj|AK070069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042I17, full
           insert sequence
          Length = 826

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 205 acgcggtcgtcgacctcctcgtacatcttgaggatctgcgcgcatgcagccagaggggtg 264
           ||||||||||| || |||||||||||||||||||| || ||||| ||||| ||||| |  
Sbjct: 603 acgcggtcgtccacttcctcgtacatcttgaggatttgtgcgcacgcagcaagaggagca 544

                                           
Query: 265 tccttctcaaaccccagagcattagccaaccg 296
           |||||||  || |||||||| || ||||||||
Sbjct: 543 tccttctggaagcccagagcgttcgccaaccg 512
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                            
Query: 205      acgcggtcgtcgacctcctcgtacatcttgaggatctgcgcgcatgcagccagaggggtg 264
                ||||||||||| || |||||||||||||||||||| || ||||| ||||| ||||| |  
Sbjct: 11216879 acgcggtcgtccacttcctcgtacatcttgaggatttgtgcgcacgcagcaagaggagca 11216820

                                                
Query: 265      tccttctcaaaccccagagcattagccaaccg 296
                |||||||  || |||||||| || ||||||||
Sbjct: 11216819 tccttctggaagcccagagcgttcgccaaccg 11216788
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>gb|AY106216.1| Zea mays PCO144716 mRNA sequence
          Length = 861

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                       
Query: 220 tcctcgtacatcttgaggatctgcgcgcatgcagccagaggggtgtccttctcaaacccc 279
           |||| |||||||||||||||||||||||||  ||  || |    ||||||||  ||||||
Sbjct: 626 tcctggtacatcttgaggatctgcgcgcatctaggaagggcaacgtccttctggaacccc 567

                                     
Query: 280 agagcattagccaaccggacgttgga 305
           |||||||| ||||| || ||||||||
Sbjct: 566 agagcatttgccaaacgaacgttgga 541
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>gb|AC116365.2| Homo sapiens chromosome 5 clone RP11-797O11, complete sequence
          Length = 117723

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 107    gttggtaatactacatataga 127
              |||||||||||||||||||||
Sbjct: 111017 gttggtaatactacatataga 111037
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>gb|AE001434.1| Plasmodium falciparum 3D7 chromosome 2 section 71 of 73 of the
            complete sequence
          Length = 12029

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 148  acacaacagctagtgataca 167
            ||||||||||||||||||||
Sbjct: 5159 acacaacagctagtgataca 5140
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>ref|XM_452223.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C00649g predicted mRNA
          Length = 1005

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 272 caaaccccagagcattagcc 291
           ||||||||||||||||||||
Sbjct: 284 caaaccccagagcattagcc 303
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>ref|XM_961214.1| Plasmodium falciparum 3D7 erythrocyte membrane protein 1 (VAR)
            partial mRNA
          Length = 6717

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 148  acacaacagctagtgataca 167
            ||||||||||||||||||||
Sbjct: 5666 acacaacagctagtgataca 5685
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>emb|CR391949.7| Zebrafish DNA sequence from clone CH211-149B20 in linkage group 9,
             complete sequence
          Length = 162252

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 123   atagatagatgtttcacaacattt 146
             ||||||||||||||||||| ||||
Sbjct: 37056 atagatagatgtttcacaatattt 37033
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>gb|AE014829.1| Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete
             sequence
          Length = 250078

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   acacaacagctagtgataca 167
             ||||||||||||||||||||
Sbjct: 35234 acacaacagctagtgataca 35253
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>emb|CR382401.1| Plasmodium falciparum chromosome 6, complete sequence; segment 4/5
          Length = 337203

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    acacaacagctagtgataca 167
              ||||||||||||||||||||
Sbjct: 330373 acacaacagctagtgataca 330354
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>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL
             Y-1140 of Kluyveromyces lactis
          Length = 1753957

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   caaaccccagagcattagcc 291
             ||||||||||||||||||||
Sbjct: 46845 caaaccccagagcattagcc 46864
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>emb|AL929359.1|PFA929359 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5
          Length = 281723

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    acacaacagctagtgataca 167
              ||||||||||||||||||||
Sbjct: 236606 acacaacagctagtgataca 236587
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>emb|AL929351.1|PFA929351 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4
          Length = 347050

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   acacaacagctagtgataca 167
             ||||||||||||||||||||
Sbjct: 27540 acacaacagctagtgataca 27559
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>emb|AL031744.8|PFMAL1P1 Plasmodium falciparum DNA from MAL1P1, complete sequence
          Length = 124330

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   acacaacagctagtgataca 167
             ||||||||||||||||||||
Sbjct: 91064 acacaacagctagtgataca 91045
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>gb|AC010683.10| Homo sapiens BAC clone RP11-364M6 from 4, complete sequence
          Length = 175283

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 111    gtaatactacatatagatagatgt 134
              ||||||||||||||||||| ||||
Sbjct: 118000 gtaatactacatatagatatatgt 117977
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>dbj|AB016605.1| Bombyx mori gene for peptidoglycan recognition protein, complete
           cds
          Length = 6812

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 120 catatagatagatgtttcacaaca 143
           |||||| |||||||||||||||||
Sbjct: 857 catatatatagatgtttcacaaca 880
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>gb|U67959.1|PFU67959 Plasmodium falciparum FCR3-varT11-1 gene, partial cds
          Length = 9353

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 148  acacaacagctagtgataca 167
            ||||||||||||||||||||
Sbjct: 8221 acacaacagctagtgataca 8240
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 86      gcagcgatacttcttgtctt 105
               ||||||||||||||||||||
Sbjct: 1952366 gcagcgatacttcttgtctt 1952347
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>gb|U82498.1|PFU82498 Plasmodium falciparum PCR fragment 2 Pf60 multigene family unknown
           protein gene, partial cds
          Length = 346

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 148 acacaacagctagtgataca 167
           ||||||||||||||||||||
Sbjct: 46  acacaacagctagtgataca 65
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>gb|U82494.1|PFU82494 Plasmodium falciparum PCR fragment 14 Pf60 multigene family unknown
           protein gene, partial cds
          Length = 382

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 148 acacaacagctagtgataca 167
           ||||||||||||||||||||
Sbjct: 109 acacaacagctagtgataca 128
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>gb|L40603.1|PFADD2D Plasmodium falciparum (strain Dd2, clone LT145) variant antigen
           PfEMP1-related gene
          Length = 1027

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 148 acacaacagctagtgataca 167
           ||||||||||||||||||||
Sbjct: 607 acacaacagctagtgataca 626


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,172,354
Number of Sequences: 3902068
Number of extensions: 2172354
Number of successful extensions: 37748
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37647
Number of HSP's gapped (non-prelim): 101
length of query: 310
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 288
effective length of database: 17,147,199,772
effective search space: 4938393534336
effective search space used: 4938393534336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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