ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags34e15 |
|---|---|
| Clone Library Name | barley_pub |
>SDB84_MOUSE (Q9CQE7) Serologically defined breast cancer antigen NY-BR-84| homolog Length = 383 Score = 95.9 bits (237), Expect = 1e-19 Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 2/117 (1%) Frame = -2 Query: 728 GIHNPLDDTSRILHDTSGTFKYYIKVVPTEYRYLSKGVLPTNQFSVTEYFVPIRPT--DR 555 GI NPLD T+ S F+Y++KVVPT Y + VL TNQFSVT + D+ Sbjct: 257 GIVNPLDHTNVTAPQASMMFQYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVANGLLGDQ 316 Query: 554 SWPAVYFLYDLSPITVTIREERRNFLHFITRLCAVLGGTFAMTGMLDRWMYRIIESI 384 P V+ LY+LSP+ V + E+ R+F HF+T +CA++GG F + G++D +Y +I Sbjct: 317 GLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAI 373
>SDB84_HUMAN (Q9Y282) Serologically defined breast cancer antigen NY-BR-84| Length = 383 Score = 95.9 bits (237), Expect = 1e-19 Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 2/117 (1%) Frame = -2 Query: 728 GIHNPLDDTSRILHDTSGTFKYYIKVVPTEYRYLSKGVLPTNQFSVTEYFVPIRPT--DR 555 GI NPLD T+ S F+Y++KVVPT Y + VL TNQFSVT + D+ Sbjct: 257 GIVNPLDHTNVTAPQASMMFQYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVANGLLGDQ 316 Query: 554 SWPAVYFLYDLSPITVTIREERRNFLHFITRLCAVLGGTFAMTGMLDRWMYRIIESI 384 P V+ LY+LSP+ V + E+ R+F HF+T +CA++GG F + G++D +Y +I Sbjct: 317 GLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAI 373
>ERGI1_BRARE (Q4V8Y6) Endoplasmic reticulum-Golgi intermediate compartment| protein 1 (ER-Golgi intermediate compartment 32 kDa protein) (ERGIC-32) Length = 290 Score = 80.5 bits (197), Expect = 5e-15 Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 1/115 (0%) Frame = -2 Query: 728 GIHNPLDDTSRILHDTSGTFKYYIKVVPTEYRYLSKGVLPTNQFSVT-EYFVPIRPTDRS 552 G N L R+ + + Y +K+VPT Y L + Q++V + +V T R Sbjct: 166 GAFNALGGADRLQSNALASHDYILKIVPTVYEELGGKQRFSYQYTVANKEYVAYSHTGRI 225 Query: 551 WPAVYFLYDLSPITVTIREERRNFLHFITRLCAVLGGTFAMTGMLDRWMYRIIES 387 PA++F YDLSPITV E RR F FIT +CA++GGTF + G++D ++ E+ Sbjct: 226 IPAIWFRYDLSPITVKYTERRRPFYRFITTICAIIGGTFTVAGIIDSCIFTASEA 280
>ERGI1_MOUSE (Q9DC16) Endoplasmic reticulum-Golgi intermediate compartment| protein 1 (ER-Golgi intermediate compartment 32 kDa protein) (ERGIC-32) Length = 290 Score = 76.6 bits (187), Expect = 7e-14 Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 1/115 (0%) Frame = -2 Query: 728 GIHNPLDDTSRILHDTSGTFKYYIKVVPTEYRYLSKGVLPTNQFSVT-EYFVPIRPTDRS 552 G N L R+ + + Y +K+VPT Y S + Q++V + +V T R Sbjct: 166 GAFNALGGADRLTSNPLASHDYILKIVPTVYEDKSGKQRYSYQYTVANKEYVAYSHTGRI 225 Query: 551 WPAVYFLYDLSPITVTIREERRNFLHFITRLCAVLGGTFAMTGMLDRWMYRIIES 387 PA++F YDLSPITV E R+ FIT +CA++GGTF + G+LD ++ E+ Sbjct: 226 IPAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEA 280
>ERGI1_HUMAN (Q969X5) Endoplasmic reticulum-Golgi intermediate compartment| protein 1 (ER-Golgi intermediate compartment 32 kDa protein) (ERGIC-32) Length = 290 Score = 76.6 bits (187), Expect = 7e-14 Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 1/115 (0%) Frame = -2 Query: 728 GIHNPLDDTSRILHDTSGTFKYYIKVVPTEYRYLSKGVLPTNQFSVT-EYFVPIRPTDRS 552 G N L R+ + + Y +K+VPT Y S + Q++V + +V T R Sbjct: 166 GAFNALGGADRLTSNPLASHDYILKIVPTVYEDKSGKQRYSYQYTVANKEYVAYSHTGRI 225 Query: 551 WPAVYFLYDLSPITVTIREERRNFLHFITRLCAVLGGTFAMTGMLDRWMYRIIES 387 PA++F YDLSPITV E R+ FIT +CA++GGTF + G+LD ++ E+ Sbjct: 226 IPAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEA 280
>ERGI1_XENLA (Q6NS19) Endoplasmic reticulum-Golgi intermediate compartment| protein 1 (ER-Golgi intermediate compartment 32 kDa protein) (ERGIC-32) Length = 290 Score = 75.9 bits (185), Expect = 1e-13 Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 1/115 (0%) Frame = -2 Query: 728 GIHNPLDDTSRILHDTSGTFKYYIKVVPTEYRYLSKGVLPTNQFSVT-EYFVPIRPTDRS 552 G N L ++ + Y +K+VPT Y L+ + Q++V + +V T R Sbjct: 166 GAFNALGGADKLASKALESHDYVLKIVPTVYEDLNGKQQFSYQYTVANKAYVAYSHTGRV 225 Query: 551 WPAVYFLYDLSPITVTIREERRNFLHFITRLCAVLGGTFAMTGMLDRWMYRIIES 387 PA++F YDLSPITV E R+ FIT +CA++GGTF + G+LD +++ E+ Sbjct: 226 VPAIWFRYDLSPITVKYTERRQPMYRFITTVCAIIGGTFTVAGILDSFIFTASEA 280
>YAI8_SCHPO (Q09895) Hypothetical protein C24B11.08c in chromosome I| Length = 390 Score = 63.2 bits (152), Expect = 8e-10 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 14/122 (11%) Frame = -2 Query: 719 NPLDDTSRILHDTSGTFKYYIKVVPTEYRYLSKGVLP--TNQFSVTEYFVPIR------- 567 NPLD T + + ++Y+IK V ++ LSK LP TN+++VT++ IR Sbjct: 263 NPLDGTVKKVSTADYRYEYFIKCVSYQFMPLSKSTLPIDTNKYAVTQHERSIRGGREEKV 322 Query: 566 PTDRSW----PAVYFLYDLSPITVTIREERRN-FLHFITRLCAVLGGTFAMTGMLDRWMY 402 PT ++ P V+F +D+SP+ V R+ R N F F++ + A+LGG + +DR Y Sbjct: 323 PTHVNFHGGIPGVWFQFDISPMRVIERQVRGNTFGGFLSNVLALLGGCVTLASFVDRGYY 382 Query: 401 RI 396 + Sbjct: 383 EV 384
>YMG7_YEAST (Q04651) Hypothetical 40.7 kDa protein in DAK1-ORC1 intergenic| region Length = 352 Score = 60.5 bits (145), Expect = 5e-09 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 4/96 (4%) Frame = -2 Query: 725 IHNPLDDTSRILHDTS-GTFKYYIKVVPTEYRYLSKGVLPTNQFSVTEY---FVPIRPTD 558 I NPLD+T++ D T+ YY VVPT ++ L V TNQ+SV +Y + + Sbjct: 215 IDNPLDNTAQFNQDEPLTTYVYYTSVVPTLFKKLGAEV-DTNQYSVNDYRYLYKDVAAKG 273 Query: 557 RSWPAVYFLYDLSPITVTIREERRNFLHFITRLCAV 450 P ++F Y+ P+++ + + R +F+ F+ RL A+ Sbjct: 274 DKMPGIFFKYNFEPLSIVVSDVRLSFIQFLVRLVAI 309
>YAE2_YEAST (P39727) Hypothetical 46.3 kDa protein in PTA1-CDC24 intergenic| region Length = 415 Score = 53.1 bits (126), Expect = 8e-07 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 12/112 (10%) Frame = -2 Query: 671 FKYYIKVVPTEYRYLSKGVLPTNQFSVTEYFVPI---RPTDR--------SWPAVYFLYD 525 F Y+ K+VPT Y YL V+ T QFS T + P+ R D P ++ ++ Sbjct: 302 FSYFAKIVPTRYEYLDNVVIETAQFSATFHSRPLAGGRDKDHPNTLHVRGGIPGMFVFFE 361 Query: 524 LSPITVTIREER-RNFLHFITRLCAVLGGTFAMTGMLDRWMYRIIESISSSK 372 +SP+ V +E+ + + FI +GG A+ ++D+ Y+ SI K Sbjct: 362 MSPLKVINKEQHGQTWSGFILNCITSIGGVLAVGTVMDKLFYKAQRSIWGKK 413
>Y022_NPVOP (O10281) Hypothetical 43.4 kDa protein (ORF20)| Length = 382 Score = 32.7 bits (73), Expect = 1.2 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%) Frame = +3 Query: 312 VVSSLLRSAWDARLPHSTSRF*----ARDRLNDPVHPSVEHSCHCKCTPKNCTEAGYEM* 479 V ++ R +WD L + RF ARD N+ + + + +C P CT+ Y Sbjct: 202 VATNTFRRSWDELLEDGSRRFEMRCNARDNNNNLMFVNPRNPL--ECLPNVCTDVNYVHS 259 Query: 480 EVPSFFSDGDCD 515 V F G+CD Sbjct: 260 TVRPVFESGECD 271
>Y022_NPVAC (P41427) Hypothetical 43.8 kDa protein in EGT-IAP1 intergenic| region (ORF 8/6) Length = 382 Score = 30.4 bits (67), Expect = 5.8 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 9/77 (11%) Frame = +3 Query: 312 VVSSLLRSAWDARLPHSTSRF*----ARDRLND-----PVHPSVEHSCHCKCTPKNCTEA 464 V ++ R +WD L T RF ARD N+ P++P +C P CT Sbjct: 202 VTTNTFRRSWDELLEDGTRRFEMRCNARDNNNNLMFVNPLNP-------LECLPNVCTNV 254 Query: 465 GYEM*EVPSFFSDGDCD 515 V F G+CD Sbjct: 255 SNVHTSVRPVFETGECD 271
>S22A5_RAT (O70594) Organic cation/carnitine transporter 2 (Solute carrier| family 22 member 5) (High-affinity sodium-dependent carnitine cotransporter) (UST2r) (CT1) Length = 557 Score = 30.0 bits (66), Expect = 7.6 Identities = 20/95 (21%), Positives = 41/95 (43%) Frame = -2 Query: 677 GTFKYYIKVVPTEYRYLSKGVLPTNQFSVTEYFVPIRPTDRSWPAVYFLYDLSPITVTIR 498 G+ +I++VP+E YLS ++ +F +T + ++ ++Y +R Sbjct: 411 GSVLLFIQLVPSELFYLSTALVMVGKFGITSAY-----------SMVYVYTAELYPTVVR 459 Query: 497 EERRNFLHFITRLCAVLGGTFAMTGMLDRWMYRII 393 +RL ++L F G DR++ I+ Sbjct: 460 NMGVGVSSTASRLGSILSPYFVYLGAYDRFLPYIL 494
>SGPP2_MOUSE (Q810K3) Sphingosine-1-phosphate phosphatase 2 (EC 3.1.3.-)| (Sphingosine-1-phosphatase 2) (SPPase2) (Spp2) Length = 354 Score = 29.6 bits (65), Expect = 10.0 Identities = 14/50 (28%), Positives = 26/50 (52%) Frame = +1 Query: 367 LGFELEIDSMILYIHRSSIPVIANVPPRTAQRRVMKCRKFRLSSLMVTVI 516 LGF + ++ S+PVI N+PP T V+ KF + +++ ++ Sbjct: 244 LGFWINHFFQLVSKPTPSLPVIQNIPPLTTDMLVLGLTKFMVGIMLILLV 293 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106,958,250 Number of Sequences: 219361 Number of extensions: 2238855 Number of successful extensions: 4608 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4467 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4604 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7536258401 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
