ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags34e11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK103742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138L11, full insert sequence Length = 1354 Score = 174 bits (88), Expect = 3e-40 Identities = 268/328 (81%) Strand = Plus / Minus Query: 317 ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 376 ||||||| || ||| |||| |||||||| || |||||||| || |||||||||||||| Sbjct: 1027 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 968 Query: 377 agatgataagcagcactacacccacaaaaactccttccaggagagtagattttaattggc 436 ||||||| |||||||||| || ||||| ||||||||| ||||| ||||||| | || Sbjct: 967 agatgatcagcagcactattccaacaaagcttccttccagcagagttgattttactaagc 908 Query: 437 actctccatcgcatttctctaggacaggtttagttgcgttggtcttctctgcaagatacc 496 |||| || || ||||| | || |||||||||| | |||||||||||||| || |||| Sbjct: 907 actccccgtcacattttccacggccaggtttagtagtattggtcttctctgcgaggtacc 848 Query: 497 tggctaatggcaggtccgaaggattctccagcaaaccatacggctgagaagcgtaaagaa 556 || ||||||| |||| ||||| ||||| ||||||||| | ||||||||||| ||||||| Sbjct: 847 tgcctaatggtaggtttgaagggttctctagcaaaccaaagggctgagaagcataaagaa 788 Query: 557 ctgtgtatttagccccagacttgtcaagaacagaaaccagatccaaaagcaactgccctt 616 || |||||||| |||||||| | || | || |||||| || ||||||||| ||||| Sbjct: 787 tcgtatatttagctccagacttcttcagcagagtaaccagctcagaaagcaactcccctt 728 Query: 617 ctgattttgcattatccttgaaaccacc 644 ||||||||| ||||||||||||||||| Sbjct: 727 ctgattttgtgttatccttgaaaccacc 700
>dbj|AK061862.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G12, full insert sequence Length = 1371 Score = 159 bits (80), Expect = 2e-35 Identities = 266/328 (81%) Strand = Plus / Minus Query: 317 ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 376 ||||||| || ||| |||| |||||||| || |||||||| || |||||||||||||| Sbjct: 1042 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 983 Query: 377 agatgataagcagcactacacccacaaaaactccttccaggagagtagattttaattggc 436 ||||||| |||||||||| || ||||| |||||| || ||||| ||||||| | || Sbjct: 982 agatgattagcagcactattccaacaaagcttccttctagcagagttgattttactaagc 923 Query: 437 actctccatcgcatttctctaggacaggtttagttgcgttggtcttctctgcaagatacc 496 |||| ||||| ||||| | || | |||||||| | || ||||||||||| || |||| Sbjct: 922 actccccatcacattttccacggccgggtttagtagtattagtcttctctgcgaggtacc 863 Query: 497 tggctaatggcaggtccgaaggattctccagcaaaccatacggctgagaagcgtaaagaa 556 || |||| ||||||| ||||| |||| ||||||||||| ||||||||||| ||||||| Sbjct: 862 tgcctaacggcaggtttgaagggctctctagcaaaccatagggctgagaagcataaagaa 803 Query: 557 ctgtgtatttagccccagacttgtcaagaacagaaaccagatccaaaagcaactgccctt 616 ||| |||||||| |||||||| | || | || |||||| || |||| |||| ||||| Sbjct: 802 ttgtatatttagctccagacttcttcagcagagtaaccagctcagaaagtaactcccctt 743 Query: 617 ctgattttgcattatccttgaaaccacc 644 ||||||||| ||||||||||||||||| Sbjct: 742 ctgattttgtgttatccttgaaaccacc 715
>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence Length = 147941 Score = 93.7 bits (47), Expect = 8e-16 Identities = 140/171 (81%) Strand = Plus / Minus Query: 408 tccttccaggagagtagattttaattggcactctccatcgcatttctctaggacaggttt 467 ||||||||| ||||| ||||||| | |||||| || || ||||| | || ||||||| Sbjct: 114190 tccttccagcagagttgattttactaagcactccccgtcacattttccacggccaggttt 114131 Query: 468 agttgcgttggtcttctctgcaagatacctggctaatggcaggtccgaaggattctccag 527 ||| | |||||||||||||| || |||||| ||||||| |||| ||||| ||||| || Sbjct: 114130 agtagtattggtcttctctgcgaggtacctgcctaatggtaggtttgaagggttctctag 114071 Query: 528 caaaccatacggctgagaagcgtaaagaactgtgtatttagccccagactt 578 ||||||| | ||||||||||| ||||||| || |||||||| |||||||| Sbjct: 114070 caaaccaaagggctgagaagcataaagaatcgtatatttagctccagactt 114020 Score = 67.9 bits (34), Expect = 4e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 317 ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 376 ||||||| || ||| |||| |||||||| || |||||||| || |||||||||||||| Sbjct: 114514 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 114455 Query: 377 agatgataagcagcacta 394 ||||||| |||||||||| Sbjct: 114454 agatgatcagcagcacta 114437 Score = 48.1 bits (24), Expect = 0.042 Identities = 30/32 (93%) Strand = Plus / Minus Query: 613 ccttctgattttgcattatccttgaaaccacc 644 ||||||||||||| ||||||||||||||||| Sbjct: 113906 ccttctgattttgtgttatccttgaaaccacc 113875
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 93.7 bits (47), Expect = 8e-16 Identities = 140/171 (81%) Strand = Plus / Plus Query: 408 tccttccaggagagtagattttaattggcactctccatcgcatttctctaggacaggttt 467 ||||||||| ||||| ||||||| | |||||| || || ||||| | || ||||||| Sbjct: 1276425 tccttccagcagagttgattttactaagcactccccgtcacattttccacggccaggttt 1276484 Query: 468 agttgcgttggtcttctctgcaagatacctggctaatggcaggtccgaaggattctccag 527 ||| | |||||||||||||| || |||||| ||||||| |||| ||||| ||||| || Sbjct: 1276485 agtagtattggtcttctctgcgaggtacctgcctaatggtaggtttgaagggttctctag 1276544 Query: 528 caaaccatacggctgagaagcgtaaagaactgtgtatttagccccagactt 578 ||||||| | ||||||||||| ||||||| || |||||||| |||||||| Sbjct: 1276545 caaaccaaagggctgagaagcataaagaatcgtatatttagctccagactt 1276595 Score = 67.9 bits (34), Expect = 4e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 317 ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 376 ||||||| || ||| |||| |||||||| || |||||||| || |||||||||||||| Sbjct: 1276101 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1276160 Query: 377 agatgataagcagcacta 394 ||||||| |||||||||| Sbjct: 1276161 agatgatcagcagcacta 1276178 Score = 48.1 bits (24), Expect = 0.042 Identities = 30/32 (93%) Strand = Plus / Plus Query: 613 ccttctgattttgcattatccttgaaaccacc 644 ||||||||||||| ||||||||||||||||| Sbjct: 1276709 ccttctgattttgtgttatccttgaaaccacc 1276740
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 93.7 bits (47), Expect = 8e-16 Identities = 140/171 (81%) Strand = Plus / Plus Query: 408 tccttccaggagagtagattttaattggcactctccatcgcatttctctaggacaggttt 467 ||||||||| ||||| ||||||| | |||||| || || ||||| | || ||||||| Sbjct: 1274146 tccttccagcagagttgattttactaagcactccccgtcacattttccacggccaggttt 1274205 Query: 468 agttgcgttggtcttctctgcaagatacctggctaatggcaggtccgaaggattctccag 527 ||| | |||||||||||||| || |||||| ||||||| |||| ||||| ||||| || Sbjct: 1274206 agtagtattggtcttctctgcgaggtacctgcctaatggtaggtttgaagggttctctag 1274265 Query: 528 caaaccatacggctgagaagcgtaaagaactgtgtatttagccccagactt 578 ||||||| | ||||||||||| ||||||| || |||||||| |||||||| Sbjct: 1274266 caaaccaaagggctgagaagcataaagaatcgtatatttagctccagactt 1274316 Score = 67.9 bits (34), Expect = 4e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 317 ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 376 ||||||| || ||| |||| |||||||| || |||||||| || |||||||||||||| Sbjct: 1273822 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1273881 Query: 377 agatgataagcagcacta 394 ||||||| |||||||||| Sbjct: 1273882 agatgatcagcagcacta 1273899 Score = 48.1 bits (24), Expect = 0.042 Identities = 30/32 (93%) Strand = Plus / Plus Query: 613 ccttctgattttgcattatccttgaaaccacc 644 ||||||||||||| ||||||||||||||||| Sbjct: 1274430 ccttctgattttgtgttatccttgaaaccacc 1274461
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 89.7 bits (45), Expect = 1e-14 Identities = 87/101 (86%) Strand = Plus / Plus Query: 478 gtcttctctgcaagatacctggctaatggcaggtccgaaggattctccagcaaaccatac 537 ||||||||||| || |||||| |||| ||||||| ||||| |||| ||||||||||| Sbjct: 1151325 gtcttctctgcgaggtacctgcctaacggcaggtttgaagggctctctagcaaaccatag 1151384 Query: 538 ggctgagaagcgtaaagaactgtgtatttagccccagactt 578 ||||||||||| ||||||| ||| |||||||| |||||||| Sbjct: 1151385 ggctgagaagcataaagaattgtatatttagctccagactt 1151425 Score = 67.9 bits (34), Expect = 4e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 317 ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 376 ||||||| || ||| |||| |||||||| || |||||||| || |||||||||||||| Sbjct: 1150960 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1151019 Query: 377 agatgataagcagcacta 394 ||||||| |||||||||| Sbjct: 1151020 agatgattagcagcacta 1151037 Score = 48.1 bits (24), Expect = 0.042 Identities = 30/32 (93%) Strand = Plus / Plus Query: 613 ccttctgattttgcattatccttgaaaccacc 644 ||||||||||||| ||||||||||||||||| Sbjct: 1151540 ccttctgattttgtgttatccttgaaaccacc 1151571
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 89.7 bits (45), Expect = 1e-14 Identities = 87/101 (86%) Strand = Plus / Plus Query: 478 gtcttctctgcaagatacctggctaatggcaggtccgaaggattctccagcaaaccatac 537 ||||||||||| || |||||| |||| ||||||| ||||| |||| ||||||||||| Sbjct: 1151325 gtcttctctgcgaggtacctgcctaacggcaggtttgaagggctctctagcaaaccatag 1151384 Query: 538 ggctgagaagcgtaaagaactgtgtatttagccccagactt 578 ||||||||||| ||||||| ||| |||||||| |||||||| Sbjct: 1151385 ggctgagaagcataaagaattgtatatttagctccagactt 1151425 Score = 67.9 bits (34), Expect = 4e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 317 ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 376 ||||||| || ||| |||| |||||||| || |||||||| || |||||||||||||| Sbjct: 1150960 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1151019 Query: 377 agatgataagcagcacta 394 ||||||| |||||||||| Sbjct: 1151020 agatgattagcagcacta 1151037 Score = 48.1 bits (24), Expect = 0.042 Identities = 30/32 (93%) Strand = Plus / Plus Query: 613 ccttctgattttgcattatccttgaaaccacc 644 ||||||||||||| ||||||||||||||||| Sbjct: 1151540 ccttctgattttgtgttatccttgaaaccacc 1151571
>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 126974 Score = 89.7 bits (45), Expect = 1e-14 Identities = 87/101 (86%) Strand = Plus / Plus Query: 478 gtcttctctgcaagatacctggctaatggcaggtccgaaggattctccagcaaaccatac 537 ||||||||||| || |||||| |||| ||||||| ||||| |||| ||||||||||| Sbjct: 90308 gtcttctctgcgaggtacctgcctaacggcaggtttgaagggctctctagcaaaccatag 90367 Query: 538 ggctgagaagcgtaaagaactgtgtatttagccccagactt 578 ||||||||||| ||||||| ||| |||||||| |||||||| Sbjct: 90368 ggctgagaagcataaagaattgtatatttagctccagactt 90408 Score = 67.9 bits (34), Expect = 4e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 317 ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 376 ||||||| || ||| |||| |||||||| || |||||||| || |||||||||||||| Sbjct: 89943 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 90002 Query: 377 agatgataagcagcacta 394 ||||||| |||||||||| Sbjct: 90003 agatgattagcagcacta 90020 Score = 48.1 bits (24), Expect = 0.042 Identities = 30/32 (93%) Strand = Plus / Plus Query: 613 ccttctgattttgcattatccttgaaaccacc 644 ||||||||||||| ||||||||||||||||| Sbjct: 90523 ccttctgattttgtgttatccttgaaaccacc 90554
>gb|AY104784.1| Zea mays PCO129009 mRNA sequence Length = 1520 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 313 tcctggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgat 372 ||||||||||| |||||||| || || |||||||| ||||||||||| |||||||||| Sbjct: 1083 tcctggggagcttcaaacctcgagggagtatcgatgcccatcatgcacatgagtcctgat 1024 Query: 373 atcaagatgataagcagcacta 394 |||| |||||| || ||||||| Sbjct: 1023 atcaggatgatgagaagcacta 1002
>gb|BT019120.1| Zea mays clone Contig732.F mRNA sequence Length = 436 Score = 71.9 bits (36), Expect = 3e-09 Identities = 114/140 (81%) Strand = Plus / Minus Query: 313 tcctggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgat 372 ||||||||||| |||||| | || || |||||||| |||||||| || ||| |||||| Sbjct: 148 tcctggggagcttcaaacttggagggagtatcgattcccatcatacacatgagccctgat 89 Query: 373 atcaagatgataagcagcactacacccacaaaaactccttccaggagagtagattttaat 432 |||||||||||||| ||||||| || ||||| |||||| || ||||| ||||| | | Sbjct: 88 atcaagatgataaggagcactattccgacaaaggttccttcaagaagagttgatttgact 29 Query: 433 tggcactctccatcgcattt 452 |||||||||| || ||||| Sbjct: 28 aggcactctccgtcacattt 9
>gb|AY109148.1| Zea mays PCO129008 mRNA sequence Length = 1389 Score = 71.9 bits (36), Expect = 3e-09 Identities = 114/140 (81%) Strand = Plus / Minus Query: 313 tcctggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgat 372 ||||||||||| |||||| | || || |||||||| |||||||| || ||| |||||| Sbjct: 1084 tcctggggagcttcaaacttggagggagtatcgattcccatcatacacatgagccctgat 1025 Query: 373 atcaagatgataagcagcactacacccacaaaaactccttccaggagagtagattttaat 432 |||||||||||||| ||||||| || ||||| |||||| || ||||| ||||| | | Sbjct: 1024 atcaagatgataaggagcactattccgacaaaggttccttcaagaagagttgatttgact 965 Query: 433 tggcactctccatcgcattt 452 |||||||||| || ||||| Sbjct: 964 aggcactctccgtcacattt 945
>gb|AC122358.2| Mus musculus BAC clone RP23-406B6 from chromosome 17, complete sequence Length = 184952 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 aagcagcactacacccacaaa 404 ||||||||||||||||||||| Sbjct: 78885 aagcagcactacacccacaaa 78905
>gb|AC098838.3| Genomic sequence for Mus musculus, clone RP23-27N1, from chromosome 17, complete sequence Length = 254336 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 aagcagcactacacccacaaa 404 ||||||||||||||||||||| Sbjct: 248536 aagcagcactacacccacaaa 248516
>gb|AC104519.2| Genomic sequence for Mus musculus, clone RP23-8L6, complete sequence Length = 197070 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 aagcagcactacacccacaaa 404 ||||||||||||||||||||| Sbjct: 16848 aagcagcactacacccacaaa 16828
>gb|AF327412.1| Mus musculus H19 gene, upstream enhancer sequence Length = 7708 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 ggcacctttcaagaggaagct 236 ||||||||||||||||||||| Sbjct: 4759 ggcacctttcaagaggaagct 4779
>gb|AC093796.3| Homo sapiens BAC clone RP11-301H24 from 4, complete sequence Length = 165929 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 474 gttggtcttctctgcaagata 494 ||||||||||||||||||||| Sbjct: 99564 gttggtcttctctgcaagata 99584
>emb|CT027994.2| M.spretus DNA sequence from clone XX-CH35_17P24 on chromosome 7, complete sequence Length = 169471 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 ggcacctttcaagaggaagct 236 ||||||||||||||||||||| Sbjct: 127172 ggcacctttcaagaggaagct 127192
>gb|AC013548.13| Mus musculus chromosome 7, clone RP23-209O22, complete sequence Length = 220084 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 ggcacctttcaagaggaagct 236 ||||||||||||||||||||| Sbjct: 130358 ggcacctttcaagaggaagct 130378
>dbj|AP003182.2| Mus musculus genomic DNA, chromosome 7 clone:B189M11, complete sequences Length = 105288 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 ggcacctttcaagaggaagct 236 ||||||||||||||||||||| Sbjct: 100473 ggcacctttcaagaggaagct 100493 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,645,675 Number of Sequences: 3902068 Number of extensions: 6645675 Number of successful extensions: 122951 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 122714 Number of HSP's gapped (non-prelim): 233 length of query: 742 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 719 effective length of database: 17,143,297,704 effective search space: 12326031049176 effective search space used: 12326031049176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
