ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags34e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PEPT_LACLC (P42020) Peptidase T (EC 3.4.11.4) (Tripeptide aminop... 29 8.5
2DUSC_HAEIN (P44606) tRNA-dihydrouridine synthase C (EC 1.-.-.-) 29 8.5

>PEPT_LACLC (P42020) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)|
           (Aminotripeptidase) (Tripeptidase)
          Length = 413

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = -2

Query: 511 ASTELGRNIDALKMXLLYAQGMLDNAQGRDIRSPALKELLHKLRELAYGADNALDELDYF 332
           A T  G  +  L+     A G +   QG+++     K ++    +LA    NAL E D  
Sbjct: 197 AYTVDGGPLGELQYETFSAAGAVIEFQGKNVHPGTAKNMMVNALQLAIDYHNALPEFDRP 256

Query: 331 RIQDELDGTYHAADLD 284
              +  +G +H   LD
Sbjct: 257 EKTEGREGFFHLLKLD 272



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>DUSC_HAEIN (P44606) tRNA-dihydrouridine synthase C (EC 1.-.-.-)|
          Length = 310

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = +2

Query: 380 PQLVQKLLESRAADVPTLRVVQHPLCVQQXHLEGVDVAA---KLGAGCP*LQQAXRDGGQ 550
           P+L  +   S    V    + QHP C+ +  +  +D+ +    L  GCP       +GG 
Sbjct: 51  PELKNQGFTSSGTPVRVQLLGQHPKCLAENAIRAIDLGSHGIDLNCGCPSKTVNGSNGGA 110

Query: 551 RLAHHPQ 571
            L   P+
Sbjct: 111 ALLKQPE 117


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,800,141
Number of Sequences: 219361
Number of extensions: 1590180
Number of successful extensions: 5018
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5013
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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