ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags34e05 |
|---|---|
| Clone Library Name | barley_pub |
>R13L1_ARATH (Q9LRR4) Putative disease resistance RPP13-like protein 1| Length = 1054 Score = 36.6 bits (83), Expect = 0.080 Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Frame = -1 Query: 500 ELGRNI-DALKMQLLYAQGMLDNAQGRDIRSPALKELLHKLRELAYGADDALDEL 339 EL N+ + L LL +L +A+ + I +P +++ +++LR++ Y A+DALD++ Sbjct: 33 ELNENLLERLSTALLTITAVLIDAEEKQITNPVVEKWVNELRDVVYHAEDALDDI 87
>RGA3_SOLBU (Q7XA40) Putative disease resistance protein RGA3 (RGA1-blb)| (Blight resistance protein B149) Length = 947 Score = 35.4 bits (80), Expect = 0.18 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Frame = -1 Query: 452 QGMLDNAQGRDIRSPALKELLHKLRELAYGADDALDE--LDYFRIQDELDGTYH 297 Q +L++AQ + ++ A+K L KL AY DD LD+ + R + + G YH Sbjct: 42 QAVLEDAQEKQLKYKAIKNWLQKLNVAAYEVDDILDDCKTEAARFKQAVLGRYH 95
>R13L4_ARATH (Q38834) Putative disease resistance RPP13-like protein 4| Length = 852 Score = 32.7 bits (73), Expect = 1.2 Identities = 18/60 (30%), Positives = 32/60 (53%) Frame = -1 Query: 527 LLESWAASTELGRNIDALKMQLLYAQGMLDNAQGRDIRSPALKELLHKLRELAYGADDAL 348 L E ++ + ++ L+ +L Y Q L +A+ + + L+ L+ LREL Y A+D L Sbjct: 17 LEEKGRTVSDYRKQLEDLQSELKYMQSFLKDAERQKRTNETLRTLVADLRELVYEAEDIL 76
>RGA2_SOLBU (Q7XBQ9) Disease resistance protein RGA2 (RGA2-blb) (Blight| resistance protein RPI) Length = 970 Score = 30.8 bits (68), Expect = 4.4 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -1 Query: 452 QGMLDNAQGRDIRSPALKELLHKLRELAYGADDALDE 342 Q +L++AQ + + + L+ L KL Y DD LDE Sbjct: 42 QAVLEDAQEKQLNNKPLENWLQKLNAATYEVDDILDE 78
>ARPM2_HUMAN (Q8TDY3) Actin-related protein T2 (ARP-T2) (Actin-related protein| M2) Length = 377 Score = 30.8 bits (68), Expect = 4.4 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 5/114 (4%) Frame = -1 Query: 494 GRNIDALKMQLLYAQG-----MLDNAQGRDIRSPALKELLHKLRELAYGADDALDELDYF 330 GR+I L MQLL A G LD DI+ L +EL+ ++ L E + Sbjct: 186 GRDITELLMQLLLASGHTFPCQLDKGLVDDIKKKLCYVALEPEKELSRRPEEVLRE---Y 242 Query: 329 RIQDELDGTYHAADLDAQNCVDRLAINARHTAKAAGIKLKCSSSSTRADPDDQK 168 ++ DG + + L + + +++ G+ SSS T+ D D QK Sbjct: 243 KLP---DGNIISLGDPLHQAPEALFVPQQLGSQSPGLSNMVSSSITKCDTDIQK 293
>M3K12_RAT (Q63796) Mitogen-activated protein kinase kinase kinase 12 (EC| 2.7.11.25) (Mixed lineage kinase) (Leucine-zipper protein kinase) (ZPK) (Dual leucine zipper bearing kinase) (DLK) (MAPK-upstream kinase) (MUK) Length = 888 Score = 30.8 bits (68), Expect = 4.4 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = -1 Query: 608 CICTTMDFAVDAALWVVGKALAPVTGGLLESWAASTELGRN 486 C C M+F L+ V +A PVT LL W+ G N Sbjct: 218 CYCILMEFCAQGQLYEVLRAGRPVTPSLLVDWSMGIAGGMN 258
>M3K12_MOUSE (Q60700) Mitogen-activated protein kinase kinase kinase 12 (EC| 2.7.11.25) (Mixed lineage kinase) (Leucine-zipper protein kinase) (ZPK) (Dual leucine zipper bearing kinase) (DLK) (MAPK-upstream kinase) (MUK) Length = 888 Score = 30.8 bits (68), Expect = 4.4 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = -1 Query: 608 CICTTMDFAVDAALWVVGKALAPVTGGLLESWAASTELGRN 486 C C M+F L+ V +A PVT LL W+ G N Sbjct: 218 CYCILMEFCAQGQLYEVLRAGRPVTPSLLVDWSMGIAGGMN 258
>M3K12_HUMAN (Q12852) Mitogen-activated protein kinase kinase kinase 12 (EC| 2.7.11.25) (Mixed lineage kinase) (Leucine-zipper protein kinase) (ZPK) (Dual leucine zipper bearing kinase) (DLK) (MAPK-upstream kinase) (MUK) Length = 859 Score = 30.8 bits (68), Expect = 4.4 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = -1 Query: 608 CICTTMDFAVDAALWVVGKALAPVTGGLLESWAASTELGRN 486 C C M+F L+ V +A PVT LL W+ G N Sbjct: 185 CYCILMEFCAQGQLYEVLRAGRPVTPSLLVDWSMGIAGGMN 225
>RGA1_SOLBU (Q7XA42) Putative disease resistance protein RGA1 (RGA3-blb)| Length = 1025 Score = 30.4 bits (67), Expect = 5.8 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -1 Query: 452 QGMLDNAQGRDIRSPALKELLHKLRELAYGADDALDE 342 Q +L++AQ + + L+ L KL Y DD LDE Sbjct: 42 QAVLEDAQEKQLNDKPLENWLQKLNAATYEVDDILDE 78
>YNG2_CAEEL (Q21653) Hypothetical protein R02F2.2| Length = 1182 Score = 30.4 bits (67), Expect = 5.8 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +1 Query: 4 FTXVFAALRAQETTLGMHPPSASWTPWVVRSGGDELISC 120 F + R++ T+ HP S SW P+V GG+ L +C Sbjct: 292 FAKLLDTFRSRPTSPEQHP-SISWNPYVYSDGGEALETC 329
>SI1L3_HUMAN (O60292) Signal-induced proliferation-associated 1-like protein 3| (SPA-1-like protein 3) Length = 1781 Score = 30.0 bits (66), Expect = 7.5 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Frame = -2 Query: 640 SPLLTAGDLLTASAPPWTSPWTRRCGWWAR--RWPPSRAACWSHGQPAPS 497 SP + P T+P + G AR WPP R A H P+PS Sbjct: 53 SPATATATATATTRPSPTTPAMPKMGVRARVADWPPKREALREHSNPSPS 102
>FIBA_BOVIN (P02672) Fibrinogen alpha chain precursor [Contains: Fibrinopeptide| A] Length = 615 Score = 30.0 bits (66), Expect = 7.5 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = -2 Query: 562 WWARRWPPSRAACWSHGQPAPSLAATSTPSRCNCCTHKGCWTTRRVGTSA 413 W R P A W+ G+P P A T P R + G W T G+S+ Sbjct: 339 WNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGS-AGTWNTGSSGSSS 387
>Y529_RALSO (Q8Y208) UPF0054 protein RSc0529| Length = 187 Score = 30.0 bits (66), Expect = 7.5 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = +3 Query: 486 VAAKLGAGCP*LQQAARDGGQRL-AHHPQRRVHGEVH 593 VAA + CP ++Q A+D G+ L AH+ VHG +H Sbjct: 116 VAADIVLCCPVVEQEAKDQGKPLRAHYAHLIVHGALH 152
>DUSC_HAEIN (P44606) tRNA-dihydrouridine synthase C (EC 1.-.-.-)| Length = 310 Score = 29.6 bits (65), Expect = 9.8 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Frame = +3 Query: 369 RQLPQLVQKLLESRAADVPTLRVVQHPLCVQQLHLEGVDVAA---KLGAGCP*LQQAARD 539 R P+L + S V + QHP C+ + + +D+ + L GCP + Sbjct: 48 RLCPELKNQGFTSSGTPVRVQLLGQHPKCLAENAIRAIDLGSHGIDLNCGCPSKTVNGSN 107 Query: 540 GGQRLAHHPQ 569 GG L P+ Sbjct: 108 GGAALLKQPE 117
>QSEC_ECOLI (P40719) Sensor protein qseC (EC 2.7.13.3)| Length = 449 Score = 29.6 bits (65), Expect = 9.8 Identities = 27/100 (27%), Positives = 45/100 (45%) Frame = -1 Query: 509 ASTELGRNIDALKMQLLYAQGMLDNAQGRDIRSPALKELLHKLRELAYGADDALDELDYF 330 A+ EL + ALK+Q AQ D+ Q R K+ L +L A +D+L Sbjct: 244 AAHELRSPLTALKVQTEVAQLSDDDPQAR-------KKALLQLHSGIDRATRLVDQLLTL 296 Query: 329 RIQDELDGTYHAADLDAQNCVDRLAINARHTAKAAGIKLK 210 D LD A++ ++ + ++ HTA+ A I ++ Sbjct: 297 SRLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKIDVR 336
>QSEC_ECO57 (Q8X524) Sensor protein qseC (EC 2.7.13.3)| Length = 449 Score = 29.6 bits (65), Expect = 9.8 Identities = 27/100 (27%), Positives = 45/100 (45%) Frame = -1 Query: 509 ASTELGRNIDALKMQLLYAQGMLDNAQGRDIRSPALKELLHKLRELAYGADDALDELDYF 330 A+ EL + ALK+Q AQ D+ Q R K+ L +L A +D+L Sbjct: 244 AAHELRSPLTALKVQTEVAQLSDDDPQAR-------KKALLQLHSGIDRATRLVDQLLTL 296 Query: 329 RIQDELDGTYHAADLDAQNCVDRLAINARHTAKAAGIKLK 210 D LD A++ ++ + ++ HTA+ A I ++ Sbjct: 297 SRLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKIDVR 336 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,413,292 Number of Sequences: 219361 Number of extensions: 2054204 Number of successful extensions: 7322 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 6977 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7317 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7422931207 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
