ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33o19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1R4RL2_RAT (Q80WD1) Reticulon-4 receptor-like 2 precursor (Nogo-6... 28 7.4
2R4RL2_MOUSE (Q7M6Z0) Reticulon-4 receptor-like 2 precursor (Nogo... 28 7.4
3R4RL2_HUMAN (Q86UN3) Reticulon-4 receptor-like 2 precursor (Nogo... 28 7.4
4ECAP_LYCES (Q42883) Calcium-transporting ATPase, endoplasmic ret... 27 9.7
5CDS1_CAEEL (P53439) Putative phosphatidate cytidylyltransferase ... 27 9.7
6AMZA_HALSA (Q9HMC3) Archaemetzincin (EC 3.-.-.-) 27 9.7

>R4RL2_RAT (Q80WD1) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor|
           homolog 1) (Nogo-66 receptor-related protein 2) (NgR2)
           (Nogo receptor-like 3)
          Length = 420

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 22  EHTFLHL-DELAVHILIFPYTFLAHNRIH*LXNHDQRGAGXMFRAYMFYYSNQG 180
           E++ LHL D+L   +    + FL  NR+  L  H  RG G + R  +     QG
Sbjct: 164 ENSLLHLQDDLFADLANLSHLFLHGNRLRLLTEHVFRGLGSLDRLLLHGNRLQG 217



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>R4RL2_MOUSE (Q7M6Z0) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor|
           homolog 1) (Nogo-66 receptor-related protein 2) (NgR2)
           (Nogo receptor-like 3)
          Length = 420

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 22  EHTFLHL-DELAVHILIFPYTFLAHNRIH*LXNHDQRGAGXMFRAYMFYYSNQG 180
           E++ LHL D+L   +    + FL  NR+  L  H  RG G + R  +     QG
Sbjct: 164 ENSLLHLQDDLFADLANLSHLFLHGNRLRLLTEHVFRGLGSLDRLLLHGNRLQG 217



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>R4RL2_HUMAN (Q86UN3) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor|
           homolog 1) (Nogo-66 receptor-related protein 2) (NgR2)
           (Nogo receptor-like 3)
          Length = 420

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 22  EHTFLHL-DELAVHILIFPYTFLAHNRIH*LXNHDQRGAGXMFRAYMFYYSNQG 180
           E++ LHL D+L   +    + FL  NR+  L  H  RG G + R  +     QG
Sbjct: 164 ENSLLHLQDDLFADLANLSHLFLHGNRLRLLTEHVFRGLGSLDRLLLHGNRLQG 217



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>ECAP_LYCES (Q42883) Calcium-transporting ATPase, endoplasmic reticulum-type|
           (EC 3.6.3.8)
          Length = 1048

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 137 PAPLWSWXINQCIR 96
           P P WSW ++QC++
Sbjct: 5   PFPAWSWSVDQCLK 18



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>CDS1_CAEEL (P53439) Putative phosphatidate cytidylyltransferase (EC 2.7.7.41)|
           (CDP-diglyceride synthetase) (CDP-diglyceride
           pyrophosphorylase) (CDP-diacylglycerol synthase)
           (CDP-DAG synthase) (CDP-DG synthetase)
          Length = 455

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 169 YNRTYRLETXALLLFGHGXLISVYDCELKMYT 74
           + R ++++    ++ GHG L+  +DC+L M T
Sbjct: 377 FKRAFKIKDFGDVIPGHGGLMDRFDCQLLMGT 408



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>AMZA_HALSA (Q9HMC3) Archaemetzincin (EC 3.-.-.-)|
          Length = 173

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 175 GCYNRTYRLETXALLLFGHGXLISVYDCELK--MYTEKSECVPLVHLDVKKCARN 17
           GC   TYRL+T +   F +     V+D  ++  +  E    + L H D  +CA N
Sbjct: 95  GCVVSTYRLQTSSDGGFSNRSSSDVFDDRVRKEVVHELGHTLGLEHCDNNRCAMN 149


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,519,574
Number of Sequences: 219361
Number of extensions: 616386
Number of successful extensions: 1163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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