ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33o19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC162893.6| Mus musculus chromosome 7, clone RP23-419K14, com... 40 4.4
2gb|AC117186.3| Mus musculus BAC clone RP23-37O6 from 1, complete... 40 4.4
3gb|AC004448.4| Homo sapiens chromosome 17, clone CTB-187M2, comp... 40 4.4
4gb|AC025627.13| Homo sapiens chromosome 17, clone RP11-1113L8, c... 40 4.4
5emb|Z22872.1|GMLEAPROA G.max Lea protein mRNA, complete CDS 40 4.4
6gb|AC140214.3| Mus musculus BAC clone RP23-479G14 from 1, comple... 40 4.4
7gb|AC109446.2| Homo sapiens chromosome 16 clone CTD-2576D5, comp... 40 4.4

>gb|AC162893.6| Mus musculus chromosome 7, clone RP23-419K14, complete sequence
          Length = 197052

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   caacctcgtccaccctcagg 306
             ||||||||||||||||||||
Sbjct: 62706 caacctcgtccaccctcagg 62687



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>gb|AC117186.3| Mus musculus BAC clone RP23-37O6 from 1, complete sequence
          Length = 172780

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   catagtccttggttttcttc 254
             ||||||||||||||||||||
Sbjct: 13262 catagtccttggttttcttc 13243



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>gb|AC004448.4| Homo sapiens chromosome 17, clone CTB-187M2, complete sequence
          Length = 149157

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   catagtccttggttttcttc 254
             ||||||||||||||||||||
Sbjct: 25809 catagtccttggttttcttc 25790



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>gb|AC025627.13| Homo sapiens chromosome 17, clone RP11-1113L8, complete sequence
          Length = 149866

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   catagtccttggttttcttc 254
             ||||||||||||||||||||
Sbjct: 20254 catagtccttggttttcttc 20273



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>emb|Z22872.1|GMLEAPROA G.max Lea protein mRNA, complete CDS
          Length = 1748

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 ggcatagtccttggttttct 252
           ||||||||||||||||||||
Sbjct: 491 ggcatagtccttggttttct 472



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 ggcatagtccttggttttct 252
           ||||||||||||||||||||
Sbjct: 458 ggcatagtccttggttttct 439



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>gb|AC140214.3| Mus musculus BAC clone RP23-479G14 from 1, complete sequence
          Length = 194229

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   catagtccttggttttcttc 254
             ||||||||||||||||||||
Sbjct: 83424 catagtccttggttttcttc 83405



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>gb|AC109446.2| Homo sapiens chromosome 16 clone CTD-2576D5, complete sequence
          Length = 193519

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 195    tccaagctttagctcttgta 214
              ||||||||||||||||||||
Sbjct: 114152 tccaagctttagctcttgta 114171


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,465,686
Number of Sequences: 3902068
Number of extensions: 2465686
Number of successful extensions: 37211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37197
Number of HSP's gapped (non-prelim): 14
length of query: 335
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 313
effective length of database: 17,147,199,772
effective search space: 5367073528636
effective search space used: 5367073528636
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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