ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags34d13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L33252.1|BLYPDIC Hordeum vulgare disulfide isomerase (PDI) mR... 256 2e-65
2gb|L33251.1|BLYPDIB Hordeum vulgare disulfide isomerase (PDI) mR... 256 2e-65
3gb|L33250.1|BLYPDIA Hordeum vulgare disulfide isomerase (PDI) mR... 256 2e-65
4gb|AY544180.1|AY544177S4 Triticum aestivum protein disulfide iso... 194 5e-47
5gb|AY544169.1| Aegilops tauschii protein disulfide isomerase (PD... 194 5e-47
6gb|AF262981.1|AF262981 Triticum aestivum protein disulfide isome... 194 5e-47
7emb|AJ868107.1| Triticum aestivum subsp. aestivum mRNA for prote... 194 5e-47
8emb|AJ868104.1| Triticum aestivum subsp. aestivum PDI gene for p... 194 5e-47
9gb|AF262979.1|AF262979 Triticum aestivum protein disulfide isome... 192 2e-46
10emb|AJ868105.1| Triticum aestivum subsp. aestivum mRNA for prote... 192 2e-46
11emb|AJ868102.1| Triticum aestivum subsp. aestivum PDI gene for p... 192 2e-46
12gb|U11496.1|TAU11496 Triticum aestivum Chinese spring protein di... 192 2e-46
13gb|AY544170.1| Triticum turgidum subsp. durum protein disulfide ... 184 5e-44
14emb|AJ277379.1|TTU277379 Triticum turgidum subsp. durum mRNA for... 184 5e-44
15emb|AJ277377.1|TTU277377 Triticum turgidum subsp. durum Pdi gene... 184 5e-44
16gb|AY544171.1| Triticum turgidum subsp. durum protein disulfide ... 168 3e-39
17gb|AF262980.1|AF262980 Triticum aestivum protein disulfide isome... 168 3e-39
18emb|X79306.1|TAISOM T.aestivum mRNA for isomerase 168 3e-39
19emb|AJ868106.1| Triticum aestivum subsp. aestivum mRNA for prote... 168 3e-39
20emb|AJ868103.1| Triticum aestivum subsp. aestivum PDI gene for p... 168 3e-39
21gb|AF475106.1| Triticum aestivum protein disulfide isomerase mRN... 56 3e-05
22emb|AL136134.5| Human DNA sequence from clone RP1-132F20 on chro... 40 1.7
23gb|AC154449.2| Mus musculus BAC clone RP24-168F5 from chromosome... 38 6.6
24emb|AL121901.20|HSBA49G10 Human DNA sequence from clone RP11-49G... 38 6.6
25emb|AL645855.25| Mouse DNA sequence from clone RP23-122N23 on ch... 38 6.6
26dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.6
27tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy ... 38 6.6
28emb|AL606599.3|OSJN00034 Oryza sativa genomic DNA, chromosome 4,... 38 6.6
29gb|AC164609.4| Mus musculus BAC clone RP24-350F17 from chromosom... 38 6.6 
>gb|L33252.1|BLYPDIC Hordeum vulgare disulfide isomerase (PDI) mRNA, 3' end
          Length = 1191

 Score =  256 bits (129), Expect = 2e-65
 Identities = 136/139 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctctcgacccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttcccc 60
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1000 ctctcgacccccctcgcaaaatctggcgttggaatctgccttgccaaaacatgtttcccc 941

                                                                        
Query: 61   atcctctacctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 940  atcctctacctgtctgctgctagaaagactgttgctcagagctcatccttcaaaggctcg 881

                               
Query: 121  gnggcagccggttccgccg 139
            | |||||||||||||||||
Sbjct: 880  gtggcagccggttccgccg 862
to top
>gb|L33251.1|BLYPDIB Hordeum vulgare disulfide isomerase (PDI) mRNA, complete cds
          Length = 1772

 Score =  256 bits (129), Expect = 2e-65
 Identities = 136/139 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctctcgacccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttcccc 60
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1658 ctctcgacccccctcgcaaaatctggcgttggaatctgccttgccaaaacatgtttcccc 1599

                                                                        
Query: 61   atcctctacctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1598 atcctctacctgtctgctgctagaaagactgttgctcagagctcatccttcaaaggctcg 1539

                               
Query: 121  gnggcagccggttccgccg 139
            | |||||||||||||||||
Sbjct: 1538 gtggcagccggttccgccg 1520
to top
>gb|L33250.1|BLYPDIA Hordeum vulgare disulfide isomerase (PDI) mRNA, complete cds
          Length = 1816

 Score =  256 bits (129), Expect = 2e-65
 Identities = 136/139 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctctcgacccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttcccc 60
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1647 ctctcgacccccctcgcaaaatctggcgttggaatctgccttgccaaaacatgtttcccc 1588

                                                                        
Query: 61   atcctctacctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1587 atcctctacctgtctgctgctagaaagactgttgctcagagctcatccttcaaaggctcg 1528

                               
Query: 121  gnggcagccggttccgccg 139
            | |||||||||||||||||
Sbjct: 1527 gtggcagccggttccgccg 1509
to top
>gb|AY544180.1|AY544177S4 Triticum aestivum protein disulfide isomerase (PDI4D) gene, exons 7
           through 10 and partial cds
          Length = 965

 Score =  194 bits (98), Expect = 5e-47
 Identities = 123/132 (93%)
 Strand = Plus / Minus

                                                                       
Query: 8   cccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttccccatcctct 67
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||
Sbjct: 959 cccccctcgcaaaatctggcgttggaagctgccttgccaaaacatgtttccccctcctct 900

                                                                       
Query: 68  acctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcggnggcag 127
           ||||||||||||||||| |||| | |||||||||||| ||||||| |||||||| |||||
Sbjct: 899 acctgtctgctgctagacagaccgatgctcagagctcgtccttcagaggctcggtggcag 840

                       
Query: 128 ccggttccgccg 139
           ||||||||||||
Sbjct: 839 ccggttccgccg 828
to top
>gb|AY544169.1| Aegilops tauschii protein disulfide isomerase (PDI4D) gene, complete
            cds
          Length = 3526

 Score =  194 bits (98), Expect = 5e-47
 Identities = 123/132 (93%)
 Strand = Plus / Minus

                                                                        
Query: 8    cccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttccccatcctct 67
            |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||
Sbjct: 3418 cccccctcgcaaaatctggcgttggaagctgccttgccaaaacatgtttccccctcctct 3359

                                                                        
Query: 68   acctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcggnggcag 127
            ||||||||||||||||| |||| | |||||||||||| ||||||| |||||||| |||||
Sbjct: 3358 acctgtctgctgctagacagaccgatgctcagagctcgtccttcagaggctcggtggcag 3299

                        
Query: 128  ccggttccgccg 139
            ||||||||||||
Sbjct: 3298 ccggttccgccg 3287
to top
>gb|AF262981.1|AF262981 Triticum aestivum protein disulfide isomerase 3 precursor (PDI3)
            mRNA, complete cds
          Length = 1862

 Score =  194 bits (98), Expect = 5e-47
 Identities = 123/132 (93%)
 Strand = Plus / Minus

                                                                        
Query: 8    cccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttccccatcctct 67
            |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||
Sbjct: 1669 cccccctcgcaaaatctggcgttggaagctgccttgccaaaacatgtttccccctcctct 1610

                                                                        
Query: 68   acctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcggnggcag 127
            ||||||||||||||||| |||| | |||||||||||| ||||||| |||||||| |||||
Sbjct: 1609 acctgtctgctgctagacagaccgatgctcagagctcgtccttcagaggctcggtggcag 1550

                        
Query: 128  ccggttccgccg 139
            ||||||||||||
Sbjct: 1549 ccggttccgccg 1538
to top
>emb|AJ868107.1| Triticum aestivum subsp. aestivum mRNA for protein disulfide
            isomerase (PDI gene), clone CPDI-4D
          Length = 1745

 Score =  194 bits (98), Expect = 5e-47
 Identities = 123/132 (93%)
 Strand = Plus / Minus

                                                                        
Query: 8    cccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttccccatcctct 67
            |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||
Sbjct: 1668 cccccctcgcaaaatctggcgttggaagctgccttgccaaaacatgtttccccctcctct 1609

                                                                        
Query: 68   acctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcggnggcag 127
            ||||||||||||||||| |||| | |||||||||||| ||||||| |||||||| |||||
Sbjct: 1608 acctgtctgctgctagacagaccgatgctcagagctcgtccttcagaggctcggtggcag 1549

                        
Query: 128  ccggttccgccg 139
            ||||||||||||
Sbjct: 1548 ccggttccgccg 1537
to top
>emb|AJ868104.1| Triticum aestivum subsp. aestivum PDI gene for protein disulfide
            isomerase, exons 1-10, clone GPDI-4D
          Length = 3466

 Score =  194 bits (98), Expect = 5e-47
 Identities = 123/132 (93%)
 Strand = Plus / Minus

                                                                        
Query: 8    cccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttccccatcctct 67
            |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||
Sbjct: 3389 cccccctcgcaaaatctggcgttggaagctgccttgccaaaacatgtttccccctcctct 3330

                                                                        
Query: 68   acctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcggnggcag 127
            ||||||||||||||||| |||| | |||||||||||| ||||||| |||||||| |||||
Sbjct: 3329 acctgtctgctgctagacagaccgatgctcagagctcgtccttcagaggctcggtggcag 3270

                        
Query: 128  ccggttccgccg 139
            ||||||||||||
Sbjct: 3269 ccggttccgccg 3258
to top
>gb|AF262979.1|AF262979 Triticum aestivum protein disulfide isomerase 1 precursor (PDI1)
            mRNA, complete cds
          Length = 1784

 Score =  192 bits (97), Expect = 2e-46
 Identities = 119/127 (93%)
 Strand = Plus / Minus

                                                                        
Query: 8    cccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttccccatcctct 67
            |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||
Sbjct: 1661 cccccctcgcaaaatctggcgttggaagctgccttgccaaaacatgtttccccctcctct 1602

                                                                        
Query: 68   acctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcggnggcag 127
            |||||||||||||||| ||||||| |||||||||||| ||||||| |||||||| |||||
Sbjct: 1601 acctgtctgctgctagcaagactgatgctcagagctcgtccttcagaggctcggtggcag 1542

                   
Query: 128  ccggttc 134
            |||||||
Sbjct: 1541 ccggttc 1535
to top
>emb|AJ868105.1| Triticum aestivum subsp. aestivum mRNA for protein disulfide
            isomerase (PDI gene), clone CPDI-4A
          Length = 1745

 Score =  192 bits (97), Expect = 2e-46
 Identities = 119/127 (93%)
 Strand = Plus / Minus

                                                                        
Query: 8    cccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttccccatcctct 67
            |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||
Sbjct: 1668 cccccctcgcaaaatctggcgttggaagctgccttgccaaaacatgtttccccctcctct 1609

                                                                        
Query: 68   acctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcggnggcag 127
            |||||||||||||||| ||||||| |||||||||||| ||||||| |||||||| |||||
Sbjct: 1608 acctgtctgctgctagcaagactgatgctcagagctcgtccttcagaggctcggtggcag 1549

                   
Query: 128  ccggttc 134
            |||||||
Sbjct: 1548 ccggttc 1542
to top
>emb|AJ868102.1| Triticum aestivum subsp. aestivum PDI gene for protein disulfide
            isomerase, exons 1-10, clone GPDI-4A
          Length = 3561

 Score =  192 bits (97), Expect = 2e-46
 Identities = 119/127 (93%)
 Strand = Plus / Minus

                                                                        
Query: 8    cccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttccccatcctct 67
            |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||
Sbjct: 3484 cccccctcgcaaaatctggcgttggaagctgccttgccaaaacatgtttccccctcctct 3425

                                                                        
Query: 68   acctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcggnggcag 127
            |||||||||||||||| ||||||| |||||||||||| ||||||| |||||||| |||||
Sbjct: 3424 acctgtctgctgctagcaagactgatgctcagagctcgtccttcagaggctcggtggcag 3365

                   
Query: 128  ccggttc 134
            |||||||
Sbjct: 3364 ccggttc 3358
to top
>gb|U11496.1|TAU11496 Triticum aestivum Chinese spring protein disulfide isomerase (PDI)
            mRNA, complete cds
          Length = 1796

 Score =  192 bits (97), Expect = 2e-46
 Identities = 119/127 (93%)
 Strand = Plus / Minus

                                                                        
Query: 8    cccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttccccatcctct 67
            |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||
Sbjct: 1672 cccccctcgcaaaatctggcgttggaagctgccttgccaaaacatgtttccccctcctct 1613

                                                                        
Query: 68   acctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcggnggcag 127
            |||||||||||||||| ||||||| |||||||||||| ||||||| |||||||| |||||
Sbjct: 1612 acctgtctgctgctagcaagactgatgctcagagctcgtccttcagaggctcggtggcag 1553

                   
Query: 128  ccggttc 134
            |||||||
Sbjct: 1552 ccggttc 1546
to top
>gb|AY544170.1| Triticum turgidum subsp. durum protein disulfide isomerase (PDI4A)
           gene, exons 7 through 10 and partial cds
          Length = 1100

 Score =  184 bits (93), Expect = 5e-44
 Identities = 118/127 (92%)
 Strand = Plus / Minus

                                                                       
Query: 8   cccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttccccatcctct 67
           |||||||||||||||||||||| |||| | ||||||||||||||||||||||| ||||||
Sbjct: 992 cccccctcgcaaaatctggcgttggaagccgccttgccaaaacatgtttccccctcctct 933

                                                                       
Query: 68  acctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcggnggcag 127
           |||||||||||||||| ||||||| |||||||||||| ||||||| |||||||| |||||
Sbjct: 932 acctgtctgctgctagcaagactgatgctcagagctcgtccttcagaggctcggtggcag 873

                  
Query: 128 ccggttc 134
           |||||||
Sbjct: 872 ccggttc 866
to top
>emb|AJ277379.1|TTU277379 Triticum turgidum subsp. durum mRNA for protein disulfide isomerase
            (Pdi gene), clone pPDICW1V
          Length = 1659

 Score =  184 bits (93), Expect = 5e-44
 Identities = 118/127 (92%)
 Strand = Plus / Minus

                                                                        
Query: 8    cccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttccccatcctct 67
            |||||||||||||||||||||| |||| | ||||||||||||||||||||||| ||||||
Sbjct: 1637 cccccctcgcaaaatctggcgttggaagccgccttgccaaaacatgtttccccctcctct 1578

                                                                        
Query: 68   acctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcggnggcag 127
            |||||||||||||||| ||||||| |||||||||||| ||||||| |||||||| |||||
Sbjct: 1577 acctgtctgctgctagcaagactgatgctcagagctcgtccttcagaggctcggtggcag 1518

                   
Query: 128  ccggttc 134
            |||||||
Sbjct: 1517 ccggttc 1511
to top
>emb|AJ277377.1|TTU277377 Triticum turgidum subsp. durum Pdi gene for protein disulfide
            isomerase, exons 1-10, clone pPDIGW1VT
          Length = 3476

 Score =  184 bits (93), Expect = 5e-44
 Identities = 118/127 (92%)
 Strand = Plus / Minus

                                                                        
Query: 8    cccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttccccatcctct 67
            |||||||||||||||||||||| |||| | ||||||||||||||||||||||| ||||||
Sbjct: 3454 cccccctcgcaaaatctggcgttggaagccgccttgccaaaacatgtttccccctcctct 3395

                                                                        
Query: 68   acctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcggnggcag 127
            |||||||||||||||| ||||||| |||||||||||| ||||||| |||||||| |||||
Sbjct: 3394 acctgtctgctgctagcaagactgatgctcagagctcgtccttcagaggctcggtggcag 3335

                   
Query: 128  ccggttc 134
            |||||||
Sbjct: 3334 ccggttc 3328
to top
>gb|AY544171.1| Triticum turgidum subsp. durum protein disulfide isomerase (PDI4B)
           gene, exons 7 through 10 and partial cds
          Length = 1061

 Score =  168 bits (85), Expect = 3e-39
 Identities = 119/131 (90%)
 Strand = Plus / Minus

                                                                       
Query: 9   ccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttccccatcctcta 68
           ||||||||||||||||||||| |||| ||||||||||||||||| ||||||| ||| |||
Sbjct: 949 ccccctcgcaaaatctggcgttggaagctgccttgccaaaacatatttccccctccccta 890

                                                                       
Query: 69  cctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcggnggcagc 128
           ||||||||||||||| || |||| |||||||||||| ||||||| |||||| | ||||||
Sbjct: 889 cctgtctgctgctagcaacactgatgctcagagctcgtccttcagaggctccgtggcagc 830

                      
Query: 129 cggttccgccg 139
           |||||||||||
Sbjct: 829 cggttccgccg 819
to top
>gb|AF262980.1|AF262980 Triticum aestivum protein disulfide isomerase 2 precursor (PDI2)
            mRNA, complete cds
          Length = 1832

 Score =  168 bits (85), Expect = 3e-39
 Identities = 119/131 (90%)
 Strand = Plus / Minus

                                                                        
Query: 9    ccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttccccatcctcta 68
            ||||||||||||||||||||| |||| ||||||||||||||||| ||||||| ||| |||
Sbjct: 1661 ccccctcgcaaaatctggcgttggaagctgccttgccaaaacatatttccccctccccta 1602

                                                                        
Query: 69   cctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcggnggcagc 128
            ||||||||||||||| || |||| |||||||||||| ||||||| |||||| | ||||||
Sbjct: 1601 cctgtctgctgctagcaacactgatgctcagagctcgtccttcagaggctccgtggcagc 1542

                       
Query: 129  cggttccgccg 139
            |||||||||||
Sbjct: 1541 cggttccgccg 1531
to top
>emb|X79306.1|TAISOM T.aestivum mRNA for isomerase
          Length = 1246

 Score =  168 bits (85), Expect = 3e-39
 Identities = 119/131 (90%)
 Strand = Plus / Minus

                                                                        
Query: 9    ccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttccccatcctcta 68
            ||||||||||||||||||||| |||| ||||||||||||||||| ||||||| ||| |||
Sbjct: 1062 ccccctcgcaaaatctggcgttggaagctgccttgccaaaacatatttccccctccccta 1003

                                                                        
Query: 69   cctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcggnggcagc 128
            ||||||||||||||| || |||| |||||||||||| ||||||| |||||| | ||||||
Sbjct: 1002 cctgtctgctgctagcaacactgatgctcagagctcgtccttcagaggctccgtggcagc 943

                       
Query: 129  cggttccgccg 139
            |||||||||||
Sbjct: 942  cggttccgccg 932
to top
>emb|AJ868106.1| Triticum aestivum subsp. aestivum mRNA for protein disulfide
            isomerase (PDI gene), clone CPDI-4B
          Length = 1739

 Score =  168 bits (85), Expect = 3e-39
 Identities = 119/131 (90%)
 Strand = Plus / Minus

                                                                        
Query: 9    ccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttccccatcctcta 68
            ||||||||||||||||||||| |||| ||||||||||||||||| ||||||| ||| |||
Sbjct: 1658 ccccctcgcaaaatctggcgttggaagctgccttgccaaaacatatttccccctccccta 1599

                                                                        
Query: 69   cctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcggnggcagc 128
            ||||||||||||||| || |||| |||||||||||| ||||||| |||||| | ||||||
Sbjct: 1598 cctgtctgctgctagcaacactgatgctcagagctcgtccttcagaggctccgtggcagc 1539

                       
Query: 129  cggttccgccg 139
            |||||||||||
Sbjct: 1538 cggttccgccg 1528
to top
>emb|AJ868103.1| Triticum aestivum subsp. aestivum PDI gene for protein disulfide
            isomerase, exons 1-10, clone GPDI-4B
          Length = 3527

 Score =  168 bits (85), Expect = 3e-39
 Identities = 119/131 (90%)
 Strand = Plus / Minus

                                                                        
Query: 9    ccccctcgcaaaatctggcgtnggaatctgccttgccaaaacatgtttccccatcctcta 68
            ||||||||||||||||||||| |||| ||||||||||||||||| ||||||| ||| |||
Sbjct: 3446 ccccctcgcaaaatctggcgttggaagctgccttgccaaaacatatttccccctccccta 3387

                                                                        
Query: 69   cctgtctgctgctagaaagactgttgctcagagctcatccttcataggctcggnggcagc 128
            ||||||||||||||| || |||| |||||||||||| ||||||| |||||| | ||||||
Sbjct: 3386 cctgtctgctgctagcaacactgatgctcagagctcgtccttcagaggctccgtggcagc 3327

                       
Query: 129  cggttccgccg 139
            |||||||||||
Sbjct: 3326 cggttccgccg 3316
to top
>gb|AF475106.1| Triticum aestivum protein disulfide isomerase mRNA, partial cds
          Length = 327

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 96  tcagagctcatccttcataggctcggnggcagccggttc 134
           ||||||||| ||||||| |||||||| ||||||||||||
Sbjct: 327 tcagagctcgtccttcagaggctcggtggcagccggttc 289
to top
>emb|AL136134.5| Human DNA sequence from clone RP1-132F20 on chromosome 6, complete
             sequence
          Length = 55247

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    tgtttccccatcctctacct 71
             ||||||||||||||||||||
Sbjct: 39943 tgtttccccatcctctacct 39924
to top
>gb|AC154449.2| Mus musculus BAC clone RP24-168F5 from chromosome 16, complete sequence
          Length = 137395

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 62    tcctctacctgtctgctgc 80
             |||||||||||||||||||
Sbjct: 97533 tcctctacctgtctgctgc 97515
to top
>emb|AL121901.20|HSBA49G10 Human DNA sequence from clone RP11-49G10 on chromosome 20 Contains the
              C20orf70 gene, the SOCS2P1 gene for suppressor of cytokine
              signalling 2 pseudogene 1, a novel gene,  the C20orf71
              gene, the PLUNC gene for palate, lung and nasal epithelium
              carcinoma associated, the 5' end of the C20orf114 gene
              encoding a protein similar to murine von ebner minor
              salivary gland protein, the RPL12P3 gene for ribosomal
              protein L12 pseudogene 3, the gene for breast cancer and
              salivary gland expression protein (BASE) and a CpG island,
              complete sequence
          Length = 161593

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 52     tgtttccccatcctctacc 70
              |||||||||||||||||||
Sbjct: 115273 tgtttccccatcctctacc 115291
to top
>emb|AL645855.25| Mouse DNA sequence from clone RP23-122N23 on chromosome 11 Contains a
             novel gene, complete sequence
          Length = 203914

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 52    tgtttccccatcctctacc 70
             |||||||||||||||||||
Sbjct: 77582 tgtttccccatcctctacc 77600
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 38       gccttgccaaaacatgttt 56
                |||||||||||||||||||
Sbjct: 15243577 gccttgccaaaacatgttt 15243559



 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 38       gccttgccaaaacatgttt 56
                |||||||||||||||||||
Sbjct: 14627624 gccttgccaaaacatgttt 14627606
to top
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region
              locus, strain C57BL/6
          Length = 2500000

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 64     ctctacctgtctgctgcta 82
              |||||||||||||||||||
Sbjct: 626796 ctctacctgtctgctgcta 626814
to top
>emb|AL606599.3|OSJN00034 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0050F15,
             complete sequence
          Length = 150562

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    gccttgccaaaacatgttt 56
             |||||||||||||||||||
Sbjct: 95761 gccttgccaaaacatgttt 95743
to top
>gb|AC164609.4| Mus musculus BAC clone RP24-350F17 from chromosome 12, complete
             sequence
          Length = 198167

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 64    ctctacctgtctgctgcta 82
             |||||||||||||||||||
Sbjct: 80608 ctctacctgtctgctgcta 80626


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 931,500
Number of Sequences: 3902068
Number of extensions: 931500
Number of successful extensions: 63354
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63284
Number of HSP's gapped (non-prelim): 70
length of query: 139
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 118
effective length of database: 17,151,101,840
effective search space: 2023830017120
effective search space used: 2023830017120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top