ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags33o13 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 189 bits (481), Expect = 5e-48 Identities = 99/113 (87%), Positives = 105/113 (92%), Gaps = 1/113 (0%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 KRTCYAQASQIRQIRRKMVEIM NQA+SCDLKELV+KFIPEVIGKEIEKATSSIFPLQNV Sbjct: 150 KRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAAE 358 +VRKVKILKAPKFDLGKLMEVHGDY KED+G KLDRP DE + G +EVAAAE Sbjct: 210 FVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAEDEAMAG-QEVAAAE 261
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 174 bits (442), Expect = 2e-43 Identities = 88/111 (79%), Positives = 97/111 (87%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 KRTCYAQ+SQI+QIRRKM EIMV QA +CDLKELV KFIPE IG+EIEKATSSI+PLQNV Sbjct: 150 KRTCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVAAA 361 ++RKVKILKAPKFD+GKLMEVHGDY EDVGVKLDRP +E P A EV A Sbjct: 210 FIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRP-AEEAAPEATEVIGA 259
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 174 bits (441), Expect = 2e-43 Identities = 86/110 (78%), Positives = 95/110 (86%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 KRTCYAQ+SQIRQIRRKM EIMVNQA SCDLK+LV KFIPE IG+EIEKATSSI+PLQNV Sbjct: 150 KRTCYAQSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVAA 364 ++RKVKILKAPKFDLGKLMEVHGDY ED+G KLDRP + V E + A Sbjct: 210 FIRKVKILKAPKFDLGKLMEVHGDYNEDIGTKLDRPAEEAVAEPTEVIGA 259
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 166 bits (420), Expect = 6e-41 Identities = 83/112 (74%), Positives = 95/112 (84%), Gaps = 1/112 (0%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 KRTCYAQ+SQIRQIRRKM EIMV +A+SCDLKELV KFIPE IG+EIEKAT I+PLQNV Sbjct: 150 KRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAA 361 ++RKVKILKAPKFDLGKLMEVHGDY EDVGVK+DRP + ++ E+ A Sbjct: 210 FIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 261
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 156 bits (394), Expect = 6e-38 Identities = 83/113 (73%), Positives = 94/113 (83%), Gaps = 2/113 (1%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQ-AASCDLKELVNKFIPEVIGKEIEKATSSIFPLQN 517 KRTCYAQ+SQIRQIR KM EIM+ + A+SCDLKELV KFIPE IGK+IEKAT I+PLQN Sbjct: 150 KRTCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQN 209 Query: 516 VYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAA 361 V++RKVKILKAPKFDL KLMEVHGDY EDVGVK+DRP DEV+ E+ A Sbjct: 210 VFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRP-ADEVVEEPTEIIGA 261
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 124 bits (311), Expect = 3e-28 Identities = 66/93 (70%), Positives = 77/93 (82%), Gaps = 1/93 (1%) Frame = -3 Query: 690 RTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSS-IFPLQNV 514 R YAQ+SQI IRRKM EIMV +A +CDLKELV KFIPEVIGKEI++ S I+PLQ+ Sbjct: 149 RNFYAQSSQIA-IRRKMREIMVKEAQTCDLKELVAKFIPEVIGKEIDEWRSQGIYPLQST 207 Query: 513 YVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 415 ++RKVKILKAPKFDL KLMEVHGDY E+VG K+ Sbjct: 208 FIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 240
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 124 bits (310), Expect = 4e-28 Identities = 61/93 (65%), Positives = 77/93 (82%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 K+T YAQ+SQIR IR+KM +++ NQ +SC ++ELV K IPEVIG+EIE+AT SIFPLQNV Sbjct: 150 KKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 415 VRKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 210 LVRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 241
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 122 bits (305), Expect = 1e-27 Identities = 61/107 (57%), Positives = 80/107 (74%), Gaps = 7/107 (6%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 ++T YAQ Q+RQIR+KMVEIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V Sbjct: 150 RKTSYAQHQQVRQIRKKMVEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 394 YVRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVERADGYE 256
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 121 bits (304), Expect = 2e-27 Identities = 61/109 (55%), Positives = 80/109 (73%), Gaps = 9/109 (8%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 ++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V Sbjct: 150 RKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGD---------YKEDVGVKLDRPDGDE 394 YVRKVK+LK PKF+LGKLME+HG+ +D G K++R DG E Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVERADGYE 258
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 121 bits (303), Expect = 2e-27 Identities = 60/109 (55%), Positives = 80/109 (73%), Gaps = 9/109 (8%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 ++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ +GK+IEKA SI+PL +V Sbjct: 150 RKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGD---------YKEDVGVKLDRPDGDE 394 YVRKVK+LK PKF+LGKLME+HG+ +D G K++R DG E Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVERADGYE 258
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 120 bits (302), Expect = 3e-27 Identities = 60/107 (56%), Positives = 80/107 (74%), Gaps = 7/107 (6%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 ++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V Sbjct: 150 RKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 394 YVRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVERADGYE 256
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 120 bits (301), Expect = 4e-27 Identities = 60/110 (54%), Positives = 80/110 (72%), Gaps = 10/110 (9%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 ++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ +GK+IEKA SI+PL +V Sbjct: 150 RKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGD----------YKEDVGVKLDRPDGDE 394 YVRKVK+LK PKF+LGKLME+HG+ + D G K++R DG E Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERADGYE 259
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 120 bits (300), Expect = 5e-27 Identities = 60/107 (56%), Positives = 79/107 (73%), Gaps = 7/107 (6%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 ++T YAQ Q+RQIR+KM EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V Sbjct: 150 RKTSYAQHQQVRQIRKKMFEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 394 YVRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVERADGYE 256
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 120 bits (300), Expect = 5e-27 Identities = 60/107 (56%), Positives = 80/107 (74%), Gaps = 7/107 (6%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 ++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V Sbjct: 150 RKTSYAQHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 394 YVRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVERADGYE 256
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 119 bits (299), Expect = 7e-27 Identities = 59/107 (55%), Positives = 80/107 (74%), Gaps = 7/107 (6%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 ++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V Sbjct: 150 RKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 394 +VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 119 bits (299), Expect = 7e-27 Identities = 59/107 (55%), Positives = 80/107 (74%), Gaps = 7/107 (6%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 ++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V Sbjct: 150 RKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 394 +VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 119 bits (299), Expect = 7e-27 Identities = 59/107 (55%), Positives = 80/107 (74%), Gaps = 7/107 (6%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 ++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V Sbjct: 150 RKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 394 +VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 119 bits (299), Expect = 7e-27 Identities = 59/93 (63%), Positives = 76/93 (81%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 K+T YAQ+SQIR I +KM +++ NQA C +KELV K IPEVIG+ IEKAT++I+PLQNV Sbjct: 150 KKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 415 +VRKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 210 FVRKVKILKAPKHDAQKLLELHGE-SQDVGSKV 241
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 119 bits (299), Expect = 7e-27 Identities = 59/107 (55%), Positives = 80/107 (74%), Gaps = 7/107 (6%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 ++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V Sbjct: 147 RKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV 206 Query: 513 YVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 394 +VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 207 FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 253
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 119 bits (298), Expect = 9e-27 Identities = 59/107 (55%), Positives = 80/107 (74%), Gaps = 7/107 (6%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 ++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V Sbjct: 150 RKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 394 +VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 FVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERADGYE 256
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 119 bits (298), Expect = 9e-27 Identities = 59/107 (55%), Positives = 80/107 (74%), Gaps = 7/107 (6%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 ++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V Sbjct: 150 RKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 394 +VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 FVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYE 256
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 118 bits (296), Expect = 1e-26 Identities = 58/107 (54%), Positives = 80/107 (74%), Gaps = 7/107 (6%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 ++T YAQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK++EKA SI+PL +V Sbjct: 150 RKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHDV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 394 +VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 210 FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 114 bits (286), Expect = 2e-25 Identities = 56/108 (51%), Positives = 78/108 (72%), Gaps = 8/108 (7%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 K+TCYAQ +Q++ IR+KMVEI+ + +S D+KE+VNK IP+ IGK+IEK+ I+PL +V Sbjct: 150 KKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGD--------YKEDVGVKLDRPDGDE 394 + KVK+LK PKFD+GKLME+HG+ + G K+DR DG E Sbjct: 210 LIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKVDRVDGYE 257
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 110 bits (274), Expect = 5e-24 Identities = 53/103 (51%), Positives = 77/103 (74%), Gaps = 1/103 (0%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 K T YAQ+S++R+ R+KM+EI+ + ++C L +L +K IPEVIG+EIEK+T +IFPLQNV Sbjct: 150 KETTYAQSSKLREARKKMIEIIEREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNV 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGD-YKEDVGVKLDRPDGDEVI 388 ++RKVK+LK PKFD G L+ +HG+ E+ G K+ D V+ Sbjct: 210 HIRKVKLLKQPKFDWGSLLALHGEGSTEEKGKKVSSGFKDVVL 252
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 108 bits (270), Expect = 2e-23 Identities = 51/108 (47%), Positives = 74/108 (68%), Gaps = 8/108 (7%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 ++TCYAQ SQ+R+IR +M +I+ N+ + DLK+LVNK + I K+IEK+ I+PL +V Sbjct: 153 RKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDV 212 Query: 513 YVRKVKILKAPKFDLGKLMEVHGD--------YKEDVGVKLDRPDGDE 394 Y+RKVK+LK P+FD+ KL+E+HGD G +DRP+G E Sbjct: 213 YIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYE 260
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 105 bits (263), Expect = 1e-22 Identities = 52/102 (50%), Positives = 72/102 (70%), Gaps = 2/102 (1%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 K+T Y + S+IR+IR +M+ + + CDLKE+V+K IP+ IGK+IEK S ++PLQ V Sbjct: 148 KKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEV 207 Query: 513 YVRKVKILKAPKFDLGKLMEVHGD--YKEDVGVKLDRPDGDE 394 Y+RKVKI+K PK DLG+L ++HGD G K+DRPD E Sbjct: 208 YIRKVKIIKRPKVDLGRLHDLHGDSITVGADGEKVDRPDDYE 249
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 101 bits (251), Expect = 2e-21 Identities = 46/84 (54%), Positives = 62/84 (73%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 ++TCYAQ SQI+ IR KM I+ + S DLK +V K +P+ I K+IEKA ++PL +V Sbjct: 153 RKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDV 212 Query: 513 YVRKVKILKAPKFDLGKLMEVHGD 442 Y+RKVK+LK P+FDL LME+HGD Sbjct: 213 YIRKVKVLKKPRFDLSSLMELHGD 236
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 99.8 bits (247), Expect = 7e-21 Identities = 48/84 (57%), Positives = 62/84 (73%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 KR YAQ+S IR IR+ + EI+ + + L +L +K IPEVI KEIE AT IFPLQN+ Sbjct: 150 KRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNI 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGD 442 +VRKVK+LK PKFD+G LM +HG+ Sbjct: 210 HVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 99.4 bits (246), Expect = 9e-21 Identities = 48/84 (57%), Positives = 61/84 (72%) Frame = -3 Query: 693 KRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNV 514 KR YAQ+S IR IR+ + EI+ + L +L +K IPEVI KEIE AT IFPLQN+ Sbjct: 150 KRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNI 209 Query: 513 YVRKVKILKAPKFDLGKLMEVHGD 442 +VRKVK+LK PKFD+G LM +HG+ Sbjct: 210 HVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_PYRFU (Q8TZE1) 30S ribosomal protein S3Ae| Length = 198 Score = 47.4 bits (111), Expect = 4e-05 Identities = 24/66 (36%), Positives = 38/66 (57%) Frame = -3 Query: 675 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 496 Q SQ R IR+ M EI+ +A + K+ V + + I EI K I+PL+ +RK+K Sbjct: 130 QTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIK 189 Query: 495 ILKAPK 478 +L+ P+ Sbjct: 190 VLEEPQ 195
>RS3A_PYRAB (Q9V2K7) 30S ribosomal protein S3Ae| Length = 199 Score = 46.2 bits (108), Expect = 9e-05 Identities = 24/66 (36%), Positives = 37/66 (56%) Frame = -3 Query: 675 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 496 Q SQ R IR+ M EI+ +A + K+ V + + I EI K I+PL+ +RK+K Sbjct: 131 QTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIYPLKKAEIRKIK 190 Query: 495 ILKAPK 478 +L P+ Sbjct: 191 VLGEPE 196
>RS3A_PYRHO (O57803) 30S ribosomal protein S3Ae| Length = 199 Score = 45.4 bits (106), Expect = 2e-04 Identities = 24/66 (36%), Positives = 37/66 (56%) Frame = -3 Query: 675 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 496 Q SQ R IR+ M EI+ +A + K+ V + + I EI K I+PL+ +RK+K Sbjct: 132 QTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEGKKIYPLKKAEIRKIK 191 Query: 495 ILKAPK 478 +L P+ Sbjct: 192 VLGEPE 197
>RS3A_METKA (Q8TVD1) 30S ribosomal protein S3Ae| Length = 211 Score = 44.3 bits (103), Expect = 4e-04 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 4/70 (5%) Frame = -3 Query: 678 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIP----EVIGKEIEKATSSIFPLQNVY 511 A+ SQ R IR++M +++ A CD E + + + E I ++I++A I+P++ Sbjct: 122 AKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEEESIPEQIKEAGRKIYPIRQAE 181 Query: 510 VRKVKILKAP 481 +RK ++L+ P Sbjct: 182 IRKTEVLEEP 191
>RS3A_METAC (Q8TKI9) 30S ribosomal protein S3Ae| Length = 203 Score = 42.0 bits (97), Expect = 0.002 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Frame = -3 Query: 693 KRTCY----AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFP 526 K TC+ A++SQ++ IR MVEI+ +AA D + + + I + I + I+P Sbjct: 120 KPTCFTIKRARSSQMQAIREMMVEIVKKRAAESDFETFMQEAILGRLSAAIYRQAKFIYP 179 Query: 525 LQNVYVRKVKILKAP 481 L+ V +RK ++ P Sbjct: 180 LRRVEIRKTEVETIP 194
>RS3A_PYRKO (Q5JGM4) 30S ribosomal protein S3Ae| Length = 200 Score = 40.8 bits (94), Expect = 0.004 Identities = 21/65 (32%), Positives = 35/65 (53%) Frame = -3 Query: 675 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 496 Q SQ R IR+ + +I+ +A + + V + + I EI K I+P++ VRK+K Sbjct: 134 QTSQERAIRKIIQDIIYKKAEELNFADFVLQSVNGQIASEIAKEARKIYPIKRAEVRKIK 193 Query: 495 ILKAP 481 +L P Sbjct: 194 VLAEP 198
>RS3A_ARCFU (O27964) 30S ribosomal protein S3Ae| Length = 211 Score = 40.0 bits (92), Expect = 0.007 Identities = 20/65 (30%), Positives = 38/65 (58%) Frame = -3 Query: 675 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 496 + SQ R IR M +I+V +A+S + + + + + + EI K I+P++ V +RK++ Sbjct: 133 KTSQKRAIRAIMRQIVVEKASSLNFVQFLQECVLGKVPAEIYKNAKKIYPIRRVEIRKIE 192 Query: 495 ILKAP 481 +L P Sbjct: 193 LLAEP 197
>RS3A_SULAC (Q4JB17) 30S ribosomal protein S3Ae| Length = 197 Score = 40.0 bits (92), Expect = 0.007 Identities = 23/70 (32%), Positives = 35/70 (50%) Frame = -3 Query: 687 TCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYV 508 T A SQ IR+ + +I +A D + V I + +I + I+PL+ V + Sbjct: 127 TYRAHISQKTAIRKVISDITRKKAEESDFDQFVQDVIFGKLSNDIFQEAKKIYPLRKVEI 186 Query: 507 RKVKILKAPK 478 K K+LKAPK Sbjct: 187 EKTKLLKAPK 196
>RS3A_METMA (Q8Q0F2) 30S ribosomal protein S3Ae| Length = 204 Score = 39.7 bits (91), Expect = 0.009 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Frame = -3 Query: 693 KRTCY----AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFP 526 K TC+ A++SQ++ IR MV+I+ +A+ D + + + I + I + I+P Sbjct: 120 KPTCFTIKRARSSQMQAIREMMVDIVKKRASETDFETFMQEAILGRLSAAIYRQAKFIYP 179 Query: 525 LQNVYVRKVKILKAP 481 L+ V +RK ++ P Sbjct: 180 LRRVEIRKTQVEAMP 194
>RS3A_PYRAE (Q8ZT21) 30S ribosomal protein S3Ae| Length = 221 Score = 39.3 bits (90), Expect = 0.012 Identities = 17/63 (26%), Positives = 35/63 (55%) Frame = -3 Query: 669 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 490 +Q +R+KM+E +V +AA D + + + + + ++ I P++ V + K+K+L Sbjct: 141 AQKSAMRKKMIETLVKKAAELDSGQFLKEILEGTLAADLFIVAKKIAPMRKVEIAKIKVL 200 Query: 489 KAP 481 K P Sbjct: 201 KYP 203
>RS3A_SULTO (Q975F8) 30S ribosomal protein S3Ae| Length = 193 Score = 38.9 bits (89), Expect = 0.015 Identities = 22/69 (31%), Positives = 35/69 (50%) Frame = -3 Query: 687 TCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYV 508 T A SQ +IR+ + I+ +A+ E V + + +I + I+PL+ V V Sbjct: 124 TYRAHRSQKTEIRKIIWNILSTRASETTFDEFVQDIVFGKLSNDIFQQAKKIYPLRKVEV 183 Query: 507 RKVKILKAP 481 K K+LKAP Sbjct: 184 EKTKLLKAP 192
>RS3A_THEVO (Q978Z2) 30S ribosomal protein S3Ae| Length = 215 Score = 37.0 bits (84), Expect = 0.057 Identities = 20/70 (28%), Positives = 37/70 (52%) Frame = -3 Query: 657 QIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 478 QIR+ + + ++N+ S E V I + I ++ AT I+PL+ + VRK +++ Sbjct: 137 QIRKVLTDFILNKGLSLPYSEFVRYLIGDDIYNDMISATKDIYPLKKIEVRKSELV---- 192 Query: 477 FDLGKLMEVH 448 L + E+H Sbjct: 193 -SLSGISEIH 201
>RS3A_SULSO (Q9UXD4) 30S ribosomal protein S3Ae| Length = 208 Score = 37.0 bits (84), Expect = 0.057 Identities = 21/72 (29%), Positives = 38/72 (52%) Frame = -3 Query: 669 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 490 SQ IR+ + E + +A+ + + + + EI +A I+PL+ + K K+L Sbjct: 131 SQKTAIRKIINETVSKKASELSFDDFTQEVVFGRLANEIFEAAKKIYPLRKAEIEKTKVL 190 Query: 489 KAPKFDLGKLME 454 K P+ +LGK +E Sbjct: 191 KVPE-NLGKQVE 201
>RS3A_HALMA (Q5V296) 30S ribosomal protein S3Ae| Length = 213 Score = 35.8 bits (81), Expect = 0.13 Identities = 24/94 (25%), Positives = 44/94 (46%) Frame = -3 Query: 678 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKV 499 A ASQ + IRR M++++ A ++L++ + + I I+PL+ V ++K Sbjct: 126 ADASQEKAIRRTMIDLVRETAEDHTFEQLIDSVVEGRLSSAIYGEAKDIYPLRRVEIKKT 185 Query: 498 KILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGD 397 + P+ EV + E+ V +D D D Sbjct: 186 TLEARPE-------EVAAE--EETAVDVDEEDVD 210
>RS3A_METTH (O27630) 30S ribosomal protein S3Ae| Length = 195 Score = 34.3 bits (77), Expect = 0.37 Identities = 19/66 (28%), Positives = 35/66 (53%) Frame = -3 Query: 678 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKV 499 A++SQ + +R+ + E + A+ +ELV + I EI I+PL+ V + K Sbjct: 129 AKSSQQKYMRQSIEEHLREIASEKTFEELVEGIVTGKIASEIYHQAKKIYPLKRVEIIKS 188 Query: 498 KILKAP 481 ++L+ P Sbjct: 189 RVLEEP 194
>RS3A_METJA (P54059) 30S ribosomal protein S3Ae| Length = 222 Score = 33.9 bits (76), Expect = 0.48 Identities = 19/67 (28%), Positives = 32/67 (47%) Frame = -3 Query: 678 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKV 499 A Q IR+KM EI+ A + V + + ++I+ IFP++NV + K Sbjct: 136 ANTKQKSDIRKKMEEIIKAMAKEKTFPQYVQAMLFGEMAEKIKNECKKIFPIKNVIIYKS 195 Query: 498 KILKAPK 478 ++L K Sbjct: 196 EVLSLAK 202
>NAL13_HUMAN (Q86W25) NACHT-, LRR- and PYD-containing protein 13| (Nucleotide-binding oligomerization domain protein 14) Length = 1043 Score = 30.8 bits (68), Expect = 4.1 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Frame = +3 Query: 84 LEITTNNTVEHKVHANIKHIWQE*TKYLVSTHNLHPESNTNKTR*LNA--G*ECRQKYSR 257 LEI + + ++HA W LV+ NLH +N ++ G K R Sbjct: 700 LEILETSKFDSRMHA-----WNSICSTLVTNENLHELDLSNSKLHASSVKGLCLALKNPR 754 Query: 258 NQPSKLTTKFTTPRWHIYHLLDKKQQNS 341 + KLT K TP W + L+ Q NS Sbjct: 755 CKVQKLTCKSVTPEWVLQDLIIALQGNS 782
>RS3A_THEAC (Q9HJ08) 30S ribosomal protein S3Ae| Length = 215 Score = 30.8 bits (68), Expect = 4.1 Identities = 20/97 (20%), Positives = 43/97 (44%) Frame = -3 Query: 657 QIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 478 +IR+ + +V++ + + V I + ++ +AT +I+PL+ + +RK Sbjct: 137 EIRKALTSFIVSKGSQLSYADFVRYLIGDDSYNDMVEATKNIYPLRKIEIRK-------- 188 Query: 477 FDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVA 367 +L+ + G + P +E PG E +A Sbjct: 189 ---SELVSLSG---------MQEPQKNEPAPGGEAIA 213
>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae| Length = 209 Score = 30.4 bits (67), Expect = 5.4 Identities = 13/61 (21%), Positives = 32/61 (52%) Frame = -3 Query: 672 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 493 A++ ++R K++ + + S L EL I + + +I ++P++ + +RK ++ Sbjct: 131 ANKRGEVRSKIIGFINERCGSMTLPELAQYIIGDNVYNDIVDTLKDVYPIKKIEIRKSEV 190 Query: 492 L 490 L Sbjct: 191 L 191
>RPOB_STRAW (Q82DQ5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1181 Score = 29.6 bits (65), Expect = 9.1 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -3 Query: 570 VIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 394 ++GK K + + P + + +R + KA + L HG+ + +GV++ DR +GDE Sbjct: 808 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 866 Query: 393 VIPGAEEV 370 + PG ++ Sbjct: 867 LPPGVNQL 874
>RPOB_STRCO (Q9L0L0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1161 Score = 29.6 bits (65), Expect = 9.1 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -3 Query: 570 VIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 394 ++GK K + + P + + +R + KA + L HG+ + +GV++ DR +GDE Sbjct: 788 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 846 Query: 393 VIPGAEEV 370 + PG ++ Sbjct: 847 LPPGVNQL 854 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,568,599 Number of Sequences: 219361 Number of extensions: 1566308 Number of successful extensions: 3698 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 3593 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3693 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6912958834 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
