ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33o07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
2dbj|AK100320.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
3dbj|AK062213.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 101 3e-18
5emb|AL713942.4|CNS07YPB Oryza sativa chromosome 12, . BAC OSJNBa... 101 3e-18
6gb|AY112473.1| Zea mays CL234_1 mRNA sequence 72 3e-09
7gb|AC011230.3| Homo sapiens BAC clone CTD-2324K8 from 7, complet... 46 0.15
8gb|AF265342.4| Homo sapiens chromosome 8 clone CTD-2053N22 map p... 46 0.15
9gb|AC113508.14| Mus musculus chromosome 13, clone RP23-376D8, co... 42 2.4
10ref|XM_542713.2| PREDICTED: Canis familiaris similar to Golgi re... 42 2.4
11ref|XM_844821.1| PREDICTED: Canis familiaris similar to Golgi re... 42 2.4
12emb|CR318652.16| Zebrafish DNA sequence from clone CH211-128O18 ... 42 2.4
13gb|AC015864.5| Homo sapiens chromosome 18, clone RP11-54A1, comp... 42 2.4
14ref|XM_690321.1| PREDICTED: Danio rerio similar to genetic suppr... 42 2.4
15ref|XM_688232.1| PREDICTED: Danio rerio similar to genetic suppr... 42 2.4
16emb|BX548023.3| Zebrafish DNA sequence from clone DKEY-265O13 in... 42 2.4
17dbj|AP001169.1| Homo sapiens genomic DNA, chromosome 18q21, dele... 42 2.4
18gb|AC159318.4| Mus musculus BAC clone RP23-76M13 from chromosome... 40 9.4
19gb|AC119905.11| Mus musculus chromosome 17, clone RP24-238N14, c... 40 9.4
20ref|XM_323085.1| Neurospora crassa OR74A hypothetical protein (N... 40 9.4
21ref|XM_956038.1| Neurospora crassa OR74A hypothetical protein (N... 40 9.4
22ref|NM_020964.2| Homo sapiens KIAA1632 (KIAA1632), mRNA 40 9.4
23gb|AC123699.10| Mus musculus chromosome 5, clone RP23-333M22, co... 40 9.4
24gb|AC155823.8| Mus musculus BAC clone RP23-348C5 from chromosome... 40 9.4
25emb|BX927371.12| Zebrafish DNA sequence from clone DKEY-1C17 in ... 40 9.4
26gb|AC113497.6| Mus musculus chromosome 10, clone RP23-365G13, co... 40 9.4
27gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 40 9.4
28emb|Z98601.1|SPAC24C9 S.pombe chromosome I cosmid c24C9 40 9.4
29gb|AY033089.1| Enterococcus casseliflavus vancomycin resistance ... 40 9.4
30emb|X59720.2|SCCHRIII S.cerevisiae chromosome III complete DNA s... 40 9.4
31gb|AC087685.9| Homo sapiens chromosome 18, clone RP11-618K16, co... 40 9.4
32emb|X12542.1|SCRAD18A S.cerevisiae RAD18 gene 40 9.4
33emb|X12588.1|SCRAD18 Yeast RAD18 gene 40 9.4
34emb|AL513466.1|NCB18D24 Neurospora crassa DNA linkage group V BA... 40 9.4
35emb|CR352305.6| Zebrafish DNA sequence from clone CH211-95N4 in ... 40 9.4
36gb|AC154750.2| Mus musculus BAC clone RP24-399I16 from chromosom... 40 9.4
37dbj|AK023817.1| Homo sapiens cDNA FLJ13755 fis, clone PLACE3000363 40 9.4
38dbj|AB225133.1| Aspergillus oryzae cDNA, contig sequence: AoEST1984 40 9.4
39gb|AC090355.9| Homo sapiens chromosome 18, clone RP11-745C22, co... 40 9.4
40dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 40 9.4
41gb|AC107383.3| Homo sapiens BAC clone RP11-125C20 from 4, comple... 40 9.4
42gb|AC100828.2| Homo sapiens chromosome 15, clone RP11-184D12, co... 40 9.4
43dbj|AK144886.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-... 40 9.4
44ref|NM_001019456.1| Schizosaccharomyces pombe 972h- hypothetical... 40 9.4
45emb|BX936295.3| Mouse DNA sequence from clone RP23-256P1 on chro... 40 9.4
46gb|AC069303.6| Homo sapiens BAC clone RP11-332N21 from 2, comple... 40 9.4
47gb|AY033764.1| Enterococcus flavescens vanC-3 vancomycin resista... 40 9.4
48gb|AC138356.3| Homo sapiens chromosome 8, clone RP11-863K10, com... 40 9.4
49gb|AC130304.12| Homo sapiens chromosome 8, clone RP11-205M5, com... 40 9.4
50gb|M36405.1|YSCRAD18A S.cerevisiae DNA repair protein (RAD18) ge... 40 9.4
51gb|AC169384.2| Mus musculus chromosome 5, clone RP23-231C16, com... 40 9.4
52emb|AL928637.7| Zebrafish DNA sequence from clone CH211-227I6, c... 40 9.4
53emb|AL831723.8| Mouse DNA sequence from clone RP23-100C7 on chro... 40 9.4
54gb|L08252.1|YSCHCM1PA Saccharomyces cerevisiae Hcm1p protein gen... 40 9.4
55dbj|AP000501.1| Homo sapiens genomic DNA, chromosome 8p11.2, clo... 40 9.4 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  101 bits (51), Expect = 3e-18
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                            
Query: 208      tattcgctttcgtagtcatcttcgtctccaaatgagaagaccgaagcgtctgcggcaatg 267
                ||||||||||| ||||| ||||| ||||| || |||||||||||||||||||| ||||| 
Sbjct: 12366260 tattcgctttcatagtcgtcttcatctccgaacgagaagaccgaagcgtctgcagcaatt 12366319

                                       
Query: 268      gccttgaactcgctcaagctgga 290
                |||||||||||||||| ||||||
Sbjct: 12366320 gccttgaactcgctcatgctgga 12366342



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 72/81 (88%)
 Strand = Plus / Plus

                                                                            
Query: 514      ctgcccttggatgatccatcttctgcttcattgtcagaaaaaacatcatccttatcatca 573
                |||||||||||||||||||||||||||||| ||||||| || || |||||||||||||  
Sbjct: 12366572 ctgcccttggatgatccatcttctgcttcactgtcagagaagacgtcatccttatcattc 12366631

                                     
Query: 574      cttccagtttctttgttggac 594
                ||| ||| ||| |||||||||
Sbjct: 12366632 cttgcagattccttgttggac 12366652



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                             
Query: 311      gtgctttggtggagtcgctcttgctgctagcttcagttttgagag 355
                ||||| ||||||||  ||||||||||||| || || |||||||||
Sbjct: 12366369 gtgctgtggtggagctgctcttgctgctaactccacttttgagag 12366413
to top
>dbj|AK100320.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079D17, full
            insert sequence
          Length = 2438

 Score =  101 bits (51), Expect = 3e-18
 Identities = 75/83 (90%)
 Strand = Plus / Minus

                                                                        
Query: 208  tattcgctttcgtagtcatcttcgtctccaaatgagaagaccgaagcgtctgcggcaatg 267
            ||||||||||| ||||| ||||| ||||| || |||||||||||||||||||| ||||| 
Sbjct: 2186 tattcgctttcatagtcgtcttcatctccgaacgagaagaccgaagcgtctgcagcaatt 2127

                                   
Query: 268  gccttgaactcgctcaagctgga 290
            |||||||||||||||| ||||||
Sbjct: 2126 gccttgaactcgctcatgctgga 2104



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 72/81 (88%)
 Strand = Plus / Minus

                                                                        
Query: 514  ctgcccttggatgatccatcttctgcttcattgtcagaaaaaacatcatccttatcatca 573
            |||||||||||||||||||||||||||||| ||||||| || || |||||||||||||  
Sbjct: 1874 ctgcccttggatgatccatcttctgcttcactgtcagagaagacgtcatccttatcattc 1815

                                 
Query: 574  cttccagtttctttgttggac 594
            ||| ||| ||| |||||||||
Sbjct: 1814 cttgcagattccttgttggac 1794



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 311  gtgctttggtggagtcgctcttgctgctagcttcagttttgagag 355
            ||||| ||||||||  ||||||||||||| || || |||||||||
Sbjct: 2077 gtgctgtggtggagctgctcttgctgctaactccacttttgagag 2033
to top
>dbj|AK062213.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A07, full
            insert sequence
          Length = 1356

 Score =  101 bits (51), Expect = 3e-18
 Identities = 75/83 (90%)
 Strand = Plus / Minus

                                                                        
Query: 208  tattcgctttcgtagtcatcttcgtctccaaatgagaagaccgaagcgtctgcggcaatg 267
            ||||||||||| ||||| ||||| ||||| || |||||||||||||||||||| ||||| 
Sbjct: 1101 tattcgctttcatagtcgtcttcatctccgaacgagaagaccgaagcgtctgcagcaatt 1042

                                   
Query: 268  gccttgaactcgctcaagctgga 290
            |||||||||||||||| ||||||
Sbjct: 1041 gccttgaactcgctcatgctgga 1019



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 72/81 (88%)
 Strand = Plus / Minus

                                                                       
Query: 514 ctgcccttggatgatccatcttctgcttcattgtcagaaaaaacatcatccttatcatca 573
           |||||||||||||||||||||||||||||| ||||||| || || |||||||||||||  
Sbjct: 789 ctgcccttggatgatccatcttctgcttcactgtcagagaagacgtcatccttatcattc 730

                                
Query: 574 cttccagtttctttgttggac 594
           ||| ||| ||| |||||||||
Sbjct: 729 cttgcagattccttgttggac 709



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 311 gtgctttggtggagtcgctcttgctgctagcttcagttttgagag 355
           ||||| ||||||||  ||||||||||||| || || |||||||||
Sbjct: 992 gtgctgtggtggagctgctcttgctgctaactccacttttgagag 948
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  101 bits (51), Expect = 3e-18
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                            
Query: 208      tattcgctttcgtagtcatcttcgtctccaaatgagaagaccgaagcgtctgcggcaatg 267
                ||||||||||| ||||| ||||| ||||| || |||||||||||||||||||| ||||| 
Sbjct: 12320630 tattcgctttcatagtcgtcttcatctccgaacgagaagaccgaagcgtctgcagcaatt 12320689

                                       
Query: 268      gccttgaactcgctcaagctgga 290
                |||||||||||||||| ||||||
Sbjct: 12320690 gccttgaactcgctcatgctgga 12320712



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 72/81 (88%)
 Strand = Plus / Plus

                                                                            
Query: 514      ctgcccttggatgatccatcttctgcttcattgtcagaaaaaacatcatccttatcatca 573
                |||||||||||||||||||||||||||||| ||||||| || || |||||||||||||  
Sbjct: 12320942 ctgcccttggatgatccatcttctgcttcactgtcagagaagacgtcatccttatcattc 12321001

                                     
Query: 574      cttccagtttctttgttggac 594
                ||| ||| ||| |||||||||
Sbjct: 12321002 cttgcagattccttgttggac 12321022



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                             
Query: 311      gtgctttggtggagtcgctcttgctgctagcttcagttttgagag 355
                ||||| ||||||||  ||||||||||||| || || |||||||||
Sbjct: 12320739 gtgctgtggtggagctgctcttgctgctaactccacttttgagag 12320783
to top
>emb|AL713942.4|CNS07YPB Oryza sativa chromosome 12, . BAC OSJNBa0009F05 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 163702

 Score =  101 bits (51), Expect = 3e-18
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                         
Query: 208   tattcgctttcgtagtcatcttcgtctccaaatgagaagaccgaagcgtctgcggcaatg 267
             ||||||||||| ||||| ||||| ||||| || |||||||||||||||||||| ||||| 
Sbjct: 80625 tattcgctttcatagtcgtcttcatctccgaacgagaagaccgaagcgtctgcagcaatt 80684

                                    
Query: 268   gccttgaactcgctcaagctgga 290
             |||||||||||||||| ||||||
Sbjct: 80685 gccttgaactcgctcatgctgga 80707



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 72/81 (88%)
 Strand = Plus / Plus

                                                                         
Query: 514   ctgcccttggatgatccatcttctgcttcattgtcagaaaaaacatcatccttatcatca 573
             |||||||||||||||||||||||||||||| ||||||| || || |||||||||||||  
Sbjct: 80937 ctgcccttggatgatccatcttctgcttcactgtcagagaagacgtcatccttatcattc 80996

                                  
Query: 574   cttccagtttctttgttggac 594
             ||| ||| ||| |||||||||
Sbjct: 80997 cttgcagattccttgttggac 81017



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 311   gtgctttggtggagtcgctcttgctgctagcttcagttttgagag 355
             ||||| ||||||||  ||||||||||||| || || |||||||||
Sbjct: 80734 gtgctgtggtggagctgctcttgctgctaactccacttttgagag 80778
to top
>gb|AY112473.1| Zea mays CL234_1 mRNA sequence
          Length = 1656

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 131/162 (80%), Gaps = 3/162 (1%)
 Strand = Plus / Minus

                                                                        
Query: 214  ctttcgtagtcatcttcgtctccaaatgagaagaccgaagcgtctgcggcaatggccttg 273
            ||||| || |||||||| ||||| || ||||| ||||| || ||||||||||| ||||||
Sbjct: 1401 ctttcataatcatcttcatctccgaacgagaacaccgaggcatctgcggcaatcgccttg 1342

                                                                        
Query: 274  aactcgctcaagctggatgattccatagc---aggaggctgtgctttggtggagtcgctc 330
            || ||||||| |||||| || ||   |||   ||||||  ||||| ||||||||  |  |
Sbjct: 1341 aattcgctcatgctggaagagtcagcagctggaggaggtggtgctgtggtggagctggcc 1282

                                                      
Query: 331  ttgctgctagcttcagttttgagagagataccgtcaggtgcc 372
            ||||||||  ||||||||||||||||  |||| |||||||||
Sbjct: 1281 ttgctgctgacttcagttttgagagatgtaccatcaggtgcc 1240



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 574  cttccagtttctttgttggactctgcaggtgcagca 609
            ||||||||| | |||||||| ||| |||||||||||
Sbjct: 1032 cttccagttcccttgttggattcttcaggtgcagca 997
to top
>gb|AC011230.3| Homo sapiens BAC clone CTD-2324K8 from 7, complete sequence
          Length = 91311

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 644   cagcatcacacttcttatcagca 666
             |||||||||||||||||||||||
Sbjct: 37299 cagcatcacacttcttatcagca 37277
to top
>gb|AF265342.4| Homo sapiens chromosome 8 clone CTD-2053N22 map p22-p21, complete
             sequence
          Length = 141254

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 644   cagcatcacacttcttatcagca 666
             |||||||||||||||||||||||
Sbjct: 11937 cagcatcacacttcttatcagca 11959
to top
>gb|AC113508.14| Mus musculus chromosome 13, clone RP23-376D8, complete sequence
          Length = 176600

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 611    tgctgtccttggcattgctgc 631
              |||||||||||||||||||||
Sbjct: 109058 tgctgtccttggcattgctgc 109078
to top
>ref|XM_542713.2| PREDICTED: Canis familiaris similar to Golgi reassembly stacking
            protein 1, transcript variant 1 (LOC485594), mRNA
          Length = 2956

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 489  accactgctggagacgtcctc 509
            |||||||||||||||||||||
Sbjct: 1065 accactgctggagacgtcctc 1045
to top
>ref|XM_844821.1| PREDICTED: Canis familiaris similar to Golgi reassembly stacking
            protein 1, transcript variant 2 (LOC485594), mRNA
          Length = 3152

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 489  accactgctggagacgtcctc 509
            |||||||||||||||||||||
Sbjct: 1065 accactgctggagacgtcctc 1045
to top
>emb|CR318652.16| Zebrafish DNA sequence from clone CH211-128O18 in linkage group 11,
              complete sequence
          Length = 179522

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 278    cgctcaagctggatgattcca 298
              |||||||||||||||||||||
Sbjct: 172680 cgctcaagctggatgattcca 172700
to top
>gb|AC015864.5| Homo sapiens chromosome 18, clone RP11-54A1, complete sequence
          Length = 177410

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                           
Query: 512    tcctgcccttggatgatccatcttctgct 540
              ||||||||||||||| |||||||||||||
Sbjct: 146250 tcctgcccttggatg-tccatcttctgct 146223
to top
>ref|XM_690321.1| PREDICTED: Danio rerio similar to genetic suppressor element 1
            (LOC567033), mRNA
          Length = 5017

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  cgctcaagctggatgattcca 298
            |||||||||||||||||||||
Sbjct: 2702 cgctcaagctggatgattcca 2722
to top
>ref|XM_688232.1| PREDICTED: Danio rerio similar to genetic suppressor element 1
            (LOC564914), mRNA
          Length = 2424

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  cgctcaagctggatgattcca 298
            |||||||||||||||||||||
Sbjct: 2185 cgctcaagctggatgattcca 2205
to top
>emb|BX548023.3| Zebrafish DNA sequence from clone DKEY-265O13 in linkage group 18,
             complete sequence
          Length = 151449

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 278   cgctcaagctggatgattcca 298
             |||||||||||||||||||||
Sbjct: 94096 cgctcaagctggatgattcca 94116
to top
>dbj|AP001169.1| Homo sapiens genomic DNA, chromosome 18q21, deleted region in human
             lung cancer, complete sequence
          Length = 146736

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                          
Query: 512   tcctgcccttggatgatccatcttctgct 540
             ||||||||||||||| |||||||||||||
Sbjct: 46796 tcctgcccttggatg-tccatcttctgct 46823
to top
>gb|AC159318.4| Mus musculus BAC clone RP23-76M13 from chromosome 12, complete sequence
          Length = 269200

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 671    catcagcaggtttttgtttt 690
              ||||||||||||||||||||
Sbjct: 121262 catcagcaggtttttgtttt 121243
to top
>gb|AC119905.11| Mus musculus chromosome 17, clone RP24-238N14, complete sequence
          Length = 179042

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 107  aattcttcccaactatgctt 126
            ||||||||||||||||||||
Sbjct: 6506 aattcttcccaactatgctt 6525
to top
>ref|XM_323085.1| Neurospora crassa OR74A hypothetical protein (NCU03785.1) partial
            mRNA
          Length = 3183

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 19   gtcgctactgtcgaagttca 38
            ||||||||||||||||||||
Sbjct: 1800 gtcgctactgtcgaagttca 1819
to top
>ref|XM_956038.1| Neurospora crassa OR74A hypothetical protein (NCU03785.1) partial
            mRNA
          Length = 3183

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 19   gtcgctactgtcgaagttca 38
            ||||||||||||||||||||
Sbjct: 1800 gtcgctactgtcgaagttca 1819
to top
>ref|NM_020964.2| Homo sapiens KIAA1632 (KIAA1632), mRNA
          Length = 12715

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 593  actctgcaggtgcagcattg 612
            ||||||||||||||||||||
Sbjct: 5327 actctgcaggtgcagcattg 5308
to top
>gb|AC123699.10| Mus musculus chromosome 5, clone RP23-333M22, complete sequence
          Length = 167971

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 504   gtcctccttcctgcccttgg 523
             ||||||||||||||||||||
Sbjct: 64945 gtcctccttcctgcccttgg 64964
to top
>gb|AC155823.8| Mus musculus BAC clone RP23-348C5 from chromosome 8, complete sequence
          Length = 219597

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 521    tggatgatccatcttctgct 540
              ||||||||||||||||||||
Sbjct: 165402 tggatgatccatcttctgct 165421
to top
>emb|BX927371.12| Zebrafish DNA sequence from clone DKEY-1C17 in linkage group 7,
             complete sequence
          Length = 154034

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 439   tgttgtgcaacacttgtttc 458
             ||||||||||||||||||||
Sbjct: 94604 tgttgtgcaacacttgtttc 94585
to top
>gb|AC113497.6| Mus musculus chromosome 10, clone RP23-365G13, complete sequence
          Length = 218508

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Plus

                                             
Query: 76     gctataataacacaaaac--gcaaagataaa 104
              ||||||||||||||||||  |||||||||||
Sbjct: 105390 gctataataacacaaaacaggcaaagataaa 105420
to top
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 183     aaacacctgcaaaagcaaag 202
               ||||||||||||||||||||
Sbjct: 1476398 aaacacctgcaaaagcaaag 1476417
to top
>emb|Z98601.1|SPAC24C9 S.pombe chromosome I cosmid c24C9
          Length = 38666

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 661  tcagcagatccatcagcagg 680
            ||||||||||||||||||||
Sbjct: 9862 tcagcagatccatcagcagg 9881
to top
>gb|AY033089.1| Enterococcus casseliflavus vancomycin resistance gene cluster,
            partial sequence
          Length = 4611

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 464  ctttggctctatttgctcca 483
            ||||||||||||||||||||
Sbjct: 1419 ctttggctctatttgctcca 1438
to top
>emb|X59720.2|SCCHRIII S.cerevisiae chromosome III complete DNA sequence
          Length = 316613

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 552    aaaaacatcatccttatcat 571
              ||||||||||||||||||||
Sbjct: 230938 aaaaacatcatccttatcat 230957
to top
>gb|AC087685.9| Homo sapiens chromosome 18, clone RP11-618K16, complete sequence
          Length = 155807

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 593  actctgcaggtgcagcattg 612
            ||||||||||||||||||||
Sbjct: 2654 actctgcaggtgcagcattg 2635
to top
>emb|X12542.1|SCRAD18A S.cerevisiae RAD18 gene
          Length = 2300

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 552 aaaaacatcatccttatcat 571
           ||||||||||||||||||||
Sbjct: 108 aaaaacatcatccttatcat 127
to top
>emb|X12588.1|SCRAD18 Yeast RAD18 gene
          Length = 2471

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 552 aaaaacatcatccttatcat 571
           ||||||||||||||||||||
Sbjct: 107 aaaaacatcatccttatcat 126
to top
>emb|AL513466.1|NCB18D24 Neurospora crassa DNA linkage group V BAC contig B18D24
          Length = 157180

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     gtcgctactgtcgaagttca 38
              ||||||||||||||||||||
Sbjct: 107857 gtcgctactgtcgaagttca 107838
to top
>emb|CR352305.6| Zebrafish DNA sequence from clone CH211-95N4 in linkage group 17,
            complete sequence
          Length = 155030

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 94   gcaaagataaatcaattctt 113
            ||||||||||||||||||||
Sbjct: 7936 gcaaagataaatcaattctt 7917
to top
>gb|AC154750.2| Mus musculus BAC clone RP24-399I16 from chromosome 17, complete sequence
          Length = 128778

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    aattcttcccaactatgctt 126
              ||||||||||||||||||||
Sbjct: 107755 aattcttcccaactatgctt 107774
to top
>dbj|AK023817.1| Homo sapiens cDNA FLJ13755 fis, clone PLACE3000363
          Length = 4348

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 593  actctgcaggtgcagcattg 612
            ||||||||||||||||||||
Sbjct: 2006 actctgcaggtgcagcattg 1987
to top
>dbj|AB225133.1| Aspergillus oryzae cDNA, contig sequence: AoEST1984
          Length = 936

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 592 gactctgcaggtgcagcatt 611
           ||||||||||||||||||||
Sbjct: 378 gactctgcaggtgcagcatt 359
to top
>gb|AC090355.9| Homo sapiens chromosome 18, clone RP11-745C22, complete sequence
          Length = 186783

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 593   actctgcaggtgcagcattg 612
             ||||||||||||||||||||
Sbjct: 53874 actctgcaggtgcagcattg 53893
to top
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023
          Length = 2661830

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 592    gactctgcaggtgcagcatt 611
              ||||||||||||||||||||
Sbjct: 819763 gactctgcaggtgcagcatt 819744
to top
>gb|AC107383.3| Homo sapiens BAC clone RP11-125C20 from 4, complete sequence
          Length = 173808

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 101    taaatcaattcttcccaactatgc 124
              ||||||||||||||||| ||||||
Sbjct: 168459 taaatcaattcttcccacctatgc 168436
to top
>gb|AC100828.2| Homo sapiens chromosome 15, clone RP11-184D12, complete sequence
          Length = 175123

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    aaatcaaacacctgcaaaag 197
              ||||||||||||||||||||
Sbjct: 120947 aaatcaaacacctgcaaaag 120928
to top
>dbj|AK144886.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched
            library, clone:G730047K19 product:unclassifiable, full
            insert sequence
          Length = 3142

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 671  catcagcaggtttttgtttt 690
            ||||||||||||||||||||
Sbjct: 1093 catcagcaggtttttgtttt 1112
to top
>ref|NM_001019456.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC24C9.06c),
            partial mRNA
          Length = 2337

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 661  tcagcagatccatcagcagg 680
            ||||||||||||||||||||
Sbjct: 2234 tcagcagatccatcagcagg 2215
to top
>emb|BX936295.3| Mouse DNA sequence from clone RP23-256P1 on chromosome 2, complete
             sequence
          Length = 56898

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 529   ccatcttctgcttcattgtcagaaaaaa 556
             |||||||| | |||||||||||||||||
Sbjct: 28212 ccatcttcagattcattgtcagaaaaaa 28239
to top
>gb|AC069303.6| Homo sapiens BAC clone RP11-332N21 from 2, complete sequence
          Length = 162968

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     ataacattgcacttgattaa 72
              ||||||||||||||||||||
Sbjct: 158095 ataacattgcacttgattaa 158076
to top
>gb|AY033764.1| Enterococcus flavescens vanC-3 vancomycin resistance gene cluster,
            complete sequence
          Length = 5662

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 464  ctttggctctatttgctcca 483
            ||||||||||||||||||||
Sbjct: 2475 ctttggctctatttgctcca 2494
to top
>gb|AC138356.3| Homo sapiens chromosome 8, clone RP11-863K10, complete sequence
          Length = 190274

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 502  acgtcctccttcctgccctt 521
            ||||||||||||||||||||
Sbjct: 5148 acgtcctccttcctgccctt 5129
to top
>gb|AC130304.12| Homo sapiens chromosome 8, clone RP11-205M5, complete sequence
          Length = 161953

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 502    acgtcctccttcctgccctt 521
              ||||||||||||||||||||
Sbjct: 101372 acgtcctccttcctgccctt 101353
to top
>gb|M36405.1|YSCRAD18A S.cerevisiae DNA repair protein (RAD18) gene, complete cds
          Length = 2300

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 552 aaaaacatcatccttatcat 571
           ||||||||||||||||||||
Sbjct: 108 aaaaacatcatccttatcat 127
to top
>gb|AC169384.2| Mus musculus chromosome 5, clone RP23-231C16, complete sequence
          Length = 204569

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 504    gtcctccttcctgcccttgg 523
              ||||||||||||||||||||
Sbjct: 198569 gtcctccttcctgcccttgg 198588
to top
>emb|AL928637.7| Zebrafish DNA sequence from clone CH211-227I6, complete sequence
          Length = 163121

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 439    tgttgtgcaacacttgtttc 458
              ||||||||||||||||||||
Sbjct: 105782 tgttgtgcaacacttgtttc 105763
to top
>emb|AL831723.8| Mouse DNA sequence from clone RP23-100C7 on chromosome 4, complete
             sequence
          Length = 171424

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 580   gtttctttgttggactctgc 599
             ||||||||||||||||||||
Sbjct: 26969 gtttctttgttggactctgc 26950
to top
>gb|L08252.1|YSCHCM1PA Saccharomyces cerevisiae Hcm1p protein gene, complete cds
          Length = 1965

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 552  aaaaacatcatccttatcat 571
            ||||||||||||||||||||
Sbjct: 1752 aaaaacatcatccttatcat 1771
to top
>dbj|AP000501.1| Homo sapiens genomic DNA, chromosome 8p11.2, clone:91h23 to 9-41
          Length = 178348

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 502    acgtcctccttcctgccctt 521
              ||||||||||||||||||||
Sbjct: 131833 acgtcctccttcctgccctt 131814


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,220,754
Number of Sequences: 3902068
Number of extensions: 7220754
Number of successful extensions: 135966
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 135745
Number of HSP's gapped (non-prelim): 224
length of query: 690
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 667
effective length of database: 17,143,297,704
effective search space: 11434579568568
effective search space used: 11434579568568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top