ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags34d01 |
|---|---|
| Clone Library Name | barley_pub |
>SIR_SYNP7 (P30008) Sulfite reductase [ferredoxin] (EC 1.8.7.1)| Length = 624 Score = 61.2 bits (147), Expect = 6e-10 Identities = 27/57 (47%), Positives = 41/57 (71%) Frame = -1 Query: 372 LGGTPNQTXLAETFMNKVKLQDIEKVLEPLFSYWNSTRQEGESFGSFTNRMGFEQLK 202 LGG+P+QT LA F++++ D+E L PLF ++ +RQ GESFG F +R+GF+ L+ Sbjct: 517 LGGSPDQTRLARPFIDRLADGDVETQLRPLFVFFKQSRQAGESFGDFCDRVGFDALR 573
>SIR_SYNY3 (P72854) Sulfite reductase [ferredoxin] (EC 1.8.7.1)| Length = 635 Score = 58.9 bits (141), Expect = 3e-09 Identities = 26/57 (45%), Positives = 38/57 (66%) Frame = -1 Query: 372 LGGTPNQTXLAETFMNKVKLQDIEKVLEPLFSYWNSTRQEGESFGSFTNRMGFEQLK 202 LGG+PNQ LA + K+ L+ +E + EPLF Y+ +R+ ESFG F +R+GF L+ Sbjct: 522 LGGSPNQERLAAAYTEKMPLEQLESLFEPLFVYFKQSRKGKESFGDFCHRVGFTALR 578
>CYSI_MANSM (Q65T54) Sulfite reductase [NADPH] hemoprotein beta-component (EC| 1.8.1.2) (SIR-HP) (SIRHP) Length = 588 Score = 38.9 bits (89), Expect = 0.003 Identities = 21/61 (34%), Positives = 31/61 (50%) Frame = -1 Query: 372 LGGTPNQTXLAETFMNKVKLQDIEKVLEPLFSYWNSTRQEGESFGSFTNRMGFEQLKXVV 193 LGG T + + + L +I L+ L + W + R +GE FG F R+G +K VV Sbjct: 514 LGGNIAGTRIPRLYKENITLDEILSELDGLIARWATERDQGEGFGDFVLRVGI--IKPVV 571 Query: 192 N 190 N Sbjct: 572 N 572
>CYSI_PHOPR (Q6LM59) Sulfite reductase [NADPH] hemoprotein beta-component (EC| 1.8.1.2) (SIR-HP) (SIRHP) Length = 563 Score = 38.5 bits (88), Expect = 0.004 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -1 Query: 372 LGGTPNQTXLAETFMNKVKLQDIEKVLEPLFSYWNSTRQEGESFGSFTNRMG 217 LGG N T + + + + + I ++ L W + R++GE FG FT R G Sbjct: 498 LGGNRNGTRVPKMYRENITVPQIMDEIDQLVGRWANEREDGEDFGDFTVRTG 549
>CYSI_VIBPA (Q87L91) Sulfite reductase [NADPH] hemoprotein beta-component (EC| 1.8.1.2) (SIR-HP) (SIRHP) Length = 578 Score = 37.4 bits (85), Expect = 0.009 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = -1 Query: 372 LGGTPNQTXLAETFMNKVKLQDIEKVLEPLFSYWNSTRQEGESFGSFTNRMGFEQ 208 LGG T + + + + + I + ++ L + W+ R+EGE+FG FT R G Q Sbjct: 513 LGGNRAGTRVPKMYKENITDKQILEEIDLLVARWSKEREEGEAFGDFTIRAGIIQ 567
>CYSI_VIBCH (Q9KUX3) Sulfite reductase [NADPH] hemoprotein beta-component (EC| 1.8.1.2) (SIR-HP) (SIRHP) Length = 577 Score = 37.0 bits (84), Expect = 0.012 Identities = 18/52 (34%), Positives = 26/52 (50%) Frame = -1 Query: 372 LGGTPNQTXLAETFMNKVKLQDIEKVLEPLFSYWNSTRQEGESFGSFTNRMG 217 LGG N T + + + + I + ++ L W S R +GE FG FT R G Sbjct: 512 LGGNRNGTRIPKMYKENITDTQILQEIDELVGRWASERLDGEGFGDFTIRAG 563
>CYSI_SALTI (Q8Z459) Sulfite reductase [NADPH] hemoprotein beta-component (EC| 1.8.1.2) (SIR-HP) (SIRHP) Length = 569 Score = 35.8 bits (81), Expect = 0.026 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = -1 Query: 372 LGGTPNQTXLAETFMNKVKLQDIEKVLEPLFSYWNSTRQEGESFGSFTNRMG 217 LGG + + + + DI+ L+ L W R+ GE FG FT R G Sbjct: 504 LGGNRIGSRIPRMYQENITEPDIQASLDELIGRWAKEREAGEGFGDFTVRAG 555
>ECM17_YEAST (P47169) Sulfite reductase [NADPH] beta subunit (EC 1.8.1.2)| (Extracellular matrix protein 17) Length = 1442 Score = 34.7 bits (78), Expect = 0.058 Identities = 19/52 (36%), Positives = 28/52 (53%) Frame = -1 Query: 372 LGGTPNQTXLAETFMNKVKLQDIEKVLEPLFSYWNSTRQEGESFGSFTNRMG 217 LGG L + + VK ++I ++PLF + R+EGE FG F R+G Sbjct: 1371 LGGGYLGQRLNKLYKANVKDEEIVDYIKPLFKRYALEREEGEHFGDFCIRVG 1422
>CYSI_SHEON (Q8EB00) Sulfite reductase [NADPH] hemoprotein beta-component (EC| 1.8.1.2) (SIR-HP) (SIRHP) Length = 565 Score = 32.3 bits (72), Expect = 0.29 Identities = 17/52 (32%), Positives = 28/52 (53%) Frame = -1 Query: 372 LGGTPNQTXLAETFMNKVKLQDIEKVLEPLFSYWNSTRQEGESFGSFTNRMG 217 LG T L + + ++ +I L+ LF+ + R GE+FG+FT R+G Sbjct: 500 LGANFEGTRLNKMYRENIQEAEILAELDALFARYAIERNAGETFGNFTVRVG 551
>CYSI_VIBVY (Q7MHA6) Sulfite reductase [NADPH] hemoprotein beta-component (EC| 1.8.1.2) (SIR-HP) (SIRHP) Length = 578 Score = 31.2 bits (69), Expect = 0.64 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = -1 Query: 372 LGGTPNQTXLAETFMNKVKLQDIEKVLEPLFSYWNSTRQEGESFGSFTNRMG 217 LGG T + + + + + I + ++ L W + R E FG FT R+G Sbjct: 513 LGGNRGGTRVPKMYKENITEKQILEEIDQLVGRWANERLPNECFGDFTVRVG 564
>CYSI_ACTPL (Q8VSR0) Sulfite reductase [NADPH] hemoprotein beta-component (EC| 1.8.1.2) (SIR-HP) (SIRHP) Length = 588 Score = 31.2 bits (69), Expect = 0.64 Identities = 14/50 (28%), Positives = 24/50 (48%) Frame = -1 Query: 372 LGGTPNQTXLAETFMNKVKLQDIEKVLEPLFSYWNSTRQEGESFGSFTNR 223 +GG + + + LQ+I ++ L + W + RQ E+FG F R Sbjct: 513 IGGDRAGLRIPRLYKENITLQEIVNEIDQLVARWATERQTNEAFGDFVIR 562
>CYSI_VIBVU (Q8DCK1) Sulfite reductase [NADPH] hemoprotein beta-component (EC| 1.8.1.2) (SIR-HP) (SIRHP) Length = 578 Score = 30.8 bits (68), Expect = 0.84 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = -1 Query: 372 LGGTPNQTXLAETFMNKVKLQDIEKVLEPLFSYWNSTRQEGESFGSFTNRMG 217 LGG T + + + + + I + ++ L W + R E FG FT R+G Sbjct: 513 LGGNRGGTRVPKMYKENITDKQILEEIDQLVGRWANERLPNECFGDFTVRVG 564
>NUOB_SHIFL (P0AFD0) NADH-quinone oxidoreductase chain B (EC 1.6.99.5) (NADH| dehydrogenase I, chain B) (NDH-1, chain B) (NUO2) Length = 220 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +1 Query: 40 VNGIDKFPPLLVYIPRVPDHSQVCLPAKMXL 132 V G+DKF P+ VYIP P + + A M L Sbjct: 142 VQGVDKFIPVDVYIPGCPPRPEAYMQALMLL 172
>NUOB_ECOLI (P0AFC7) NADH-quinone oxidoreductase chain B (EC 1.6.99.5) (NADH| dehydrogenase I, chain B) (NDH-1, chain B) (NUO2) Length = 220 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +1 Query: 40 VNGIDKFPPLLVYIPRVPDHSQVCLPAKMXL 132 V G+DKF P+ VYIP P + + A M L Sbjct: 142 VQGVDKFIPVDVYIPGCPPRPEAYMQALMLL 172
>NUOB_ECOL6 (P0AFC8) NADH-quinone oxidoreductase chain B (EC 1.6.99.5) (NADH| dehydrogenase I, chain B) (NDH-1, chain B) (NUO2) Length = 220 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +1 Query: 40 VNGIDKFPPLLVYIPRVPDHSQVCLPAKMXL 132 V G+DKF P+ VYIP P + + A M L Sbjct: 142 VQGVDKFIPVDVYIPGCPPRPEAYMQALMLL 172
>NUOB_ECO57 (P0AFC9) NADH-quinone oxidoreductase chain B (EC 1.6.99.5) (NADH| dehydrogenase I, chain B) (NDH-1, chain B) (NUO2) Length = 220 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +1 Query: 40 VNGIDKFPPLLVYIPRVPDHSQVCLPAKMXL 132 V G+DKF P+ VYIP P + + A M L Sbjct: 142 VQGVDKFIPVDVYIPGCPPRPEAYMQALMLL 172
>PODXL_HUMAN (O00592) Podocalyxin-like protein 1 precursor| Length = 528 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 63 SSPCLYPKSP*PQPGMSPSKNGAGTCLXS 149 S+P L P SP P P SPS+N T S Sbjct: 15 STPPLLPSSPSPSPSPSPSQNATQTTTDS 43
>NUOB_PECCC (O85274) NADH-quinone oxidoreductase chain B (EC 1.6.99.5) (NADH| dehydrogenase I, chain B) (NDH-1, chain B) Length = 224 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 40 VNGIDKFPPLLVYIPRVPDHSQVCLPAKMXL 132 V G+DKF P+ VYIP P + + A + L Sbjct: 146 VQGVDKFLPVDVYIPGCPPRPEAYMQALLLL 176
>NU2M_CROLA (P34187) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 348 Score = 28.9 bits (63), Expect = 3.2 Identities = 21/59 (35%), Positives = 27/59 (45%) Frame = -1 Query: 177 ATSAA*ELFCXTSKSQXHFCWETYLAVVRDSWDINKERRKLVNSVDRRRLKLGSGLAPL 1 AT+AA LF T+ + W T WDIN L +S+ L L GLAP+ Sbjct: 64 ATAAAMILFAATTNA-----WAT------GEWDINNLTHPLASSLTMMALALKVGLAPM 111
>FFAR1_HUMAN (O14842) Free fatty acid receptor 1 (G-protein coupled receptor 40)| Length = 300 Score = 28.9 bits (63), Expect = 3.2 Identities = 21/63 (33%), Positives = 25/63 (39%) Frame = +1 Query: 106 VCLPAKMXLGLACXAKKLSCG*CCPLPLVHHLFQLLKSHSVREAPKRFAFLARAIPIGKQ 285 V LP K LA A L CP+ V H F L A +L A P+G Q Sbjct: 57 VSLPLKAVEALASGAWPLPAS-LCPVFAVAHFFPLYAGGGFLAALSAGRYLGAAFPLGYQ 115 Query: 286 XFQ 294 F+ Sbjct: 116 AFR 118
>V29K_TYYVF (P09504) 29 kDa protein (ORF 1)| Length = 249 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Frame = +1 Query: 199 LFQLLKSHSVREAPKRFAFLARAIPIGKQXFQNLLNI---LKLHFIHESF 339 LFQ L S ++ +R F R IP+G L N+ L++ + E F Sbjct: 145 LFQRLLSTWTKDVERRIFFSCREIPLGSDTLMELANLGEFLRVMVVGEQF 194
>CYSI_BUCAI (P57502) Sulfite reductase [NADPH] hemoprotein beta-component (EC| 1.8.1.2) (SIR-HP) (SIRHP) Length = 569 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/61 (27%), Positives = 29/61 (47%) Frame = -1 Query: 372 LGGTPNQTXLAETFMNKVKLQDIEKVLEPLFSYWNSTRQEGESFGSFTNRMGFEQLKXVV 193 +GG + + + + Q+I L+ L W++ R+ E FG F R F +K V+ Sbjct: 504 IGGNRIGNRIPKIYKENITEQEILIHLKYLIKTWSNERKNKEDFGDFIVRKEF--VKEVI 561 Query: 192 N 190 N Sbjct: 562 N 562
>FBN1_HUMAN (P35555) Fibrillin-1 precursor| Length = 2871 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +1 Query: 16 RPEFEPPPVNGIDKFPPLLVYIPRVPDHSQVCLP 117 RPE+ PPP+ I PP+L P P Q+ +P Sbjct: 398 RPEYPPPPLGPI---PPVLPVPPGFPPGPQIPVP 428
>NUOB_BUCAI (P57253) NADH-quinone oxidoreductase chain B (EC 1.6.99.5) (NADH| dehydrogenase I, chain B) (NDH-1, chain B) Length = 224 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +1 Query: 40 VNGIDKFPPLLVYIPRVPDHSQVCLPAKMXL 132 V G+DKF P+ +YIP P + + A + L Sbjct: 146 VQGVDKFLPVDIYIPGCPPRPEAYMQALILL 176
>NUOB_BUCBP (Q89AU5) NADH-quinone oxidoreductase chain B (EC 1.6.99.5) (NADH| dehydrogenase I, chain B) (NDH-1, chain B) Length = 222 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +1 Query: 40 VNGIDKFPPLLVYIPRVPDHSQVCLPAKMXL 132 V G+DKF P+ VYIP P + + M L Sbjct: 146 VQGVDKFLPVDVYIPGCPPRPEAYIHGLMLL 176
>TPIC_FRAAN (Q9M4S8) Triosephosphate isomerase, chloroplast precursor (EC| 5.3.1.1) (TIM) (Triose-phosphate isomerase) Length = 314 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 14/75 (18%) Frame = -1 Query: 366 GTPNQTXLAETFMNKVKLQ-DIEKVLEPLFSYWNSTRQE--------GESF-----GSFT 229 GT + + +N KL+ D++ V+ P F Y + + G++ G+FT Sbjct: 75 GTKDLISKLVSDLNSAKLEPDVDVVVAPPFLYLDQVKSSLTDRIEISGQNSWVAKGGAFT 134 Query: 228 NRMGFEQLKXVVNKW 184 + EQLK + KW Sbjct: 135 GEISVEQLKDIGRKW 149
>LEU3_STRR6 (Q8DPJ4) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 345 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/38 (28%), Positives = 24/38 (63%) Frame = -1 Query: 123 FCWETYLAVVRDSWDINKERRKLVNSVDRRRLKLGSGL 10 + +E ++R +++I + RRK+V S+D++ + S L Sbjct: 156 YSYEEVERIIRKAFEIARNRRKIVTSIDKQNVLATSKL 193
>TFG_HUMAN (Q92734) Protein TFG (TRK-fused gene protein)| Length = 400 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +3 Query: 60 SSSPCLYPKSP*PQPGMSPSKNGA 131 +S P Y +P QPGM+PS+ GA Sbjct: 333 TSQPTNYTVAPASQPGMAPSQPGA 356
>SYR_GLOVI (Q7NDF6) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 601 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%) Frame = +1 Query: 25 FEPPPVNGIDKFPP---LLVYIPRVPDHSQVCLPAKMXLGLACXAKKLS 162 FE + + + PP ++V P+VP+H P M L C L+ Sbjct: 22 FEAGQLGQLTQLPPRQSVVVEKPKVPEHGDYATPVAMSLAKPCRLAPLA 70
>NUKC_ANAVT (Q9XBL7) NAD(P)H-quinone oxidoreductase subunit K (EC 1.6.5.-)| (NAD(P)H dehydrogenase I, subunit K) (NDH-1, subunit K) Length = 245 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +1 Query: 31 PPPVNGIDKFPPLLVYIPRVPDHSQVCLPAKMXL 132 P V G+DK P+ VY+P P + + A + L Sbjct: 135 PTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKL 168
>NUKC_ANASP (Q44240) NAD(P)H-quinone oxidoreductase subunit K (EC 1.6.5.-)| (NAD(P)H dehydrogenase I, subunit K) (NDH-1, subunit K) (NDH-K) Length = 245 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +1 Query: 31 PPPVNGIDKFPPLLVYIPRVPDHSQVCLPAKMXL 132 P V G+DK P+ VY+P P + + A + L Sbjct: 135 PTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKL 168
>COAE_BARHE (Q6G5A8) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A| kinase) Length = 195 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 6/46 (13%) Frame = -1 Query: 366 GTPNQTXLAETFMN-KVKLQDIEKVLEPLF-----SYWNSTRQEGE 247 G N+ L+E +N KLQ +EK++ PL + ++ RQ+GE Sbjct: 59 GKVNRQKLSEILINDNEKLQTLEKIIHPLVQEKEKKFIDTARQQGE 104
>FKBX_PSEFL (P21863) Probable FKBP-type 16 kDa peptidyl-prolyl cis-trans| isomerase (EC 5.2.1.8) (PPIase) (Rotamase) Length = 150 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%) Frame = -3 Query: 139 QVPAPFLLGD---IPGCGQGLLGYKQGEEETCQ 50 + PA F +GD +PG L G+K G++ T Q Sbjct: 37 KAPATFKVGDGNLLPGFEAALFGFKAGDKRTLQ 69
>DSVA_DESGI (P94693) Sulfite reductase, dissimilatory-type alpha subunit (EC| 1.8.99.3) (Desulfoviridin alpha subunit) (Hydrogensulfite reductase alpha subunit) (Fragment) Length = 198 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/38 (26%), Positives = 22/38 (57%) Frame = -1 Query: 309 DIEKVLEPLFSYWNSTRQEGESFGSFTNRMGFEQLKXV 196 ++++V+E ++ +W + E G R+GF++L V Sbjct: 118 EVKEVIENIWEWWMEEGKNRERLGETMKRVGFQKLLEV 155
>CYSI_ZYMMO (Q5NRM2) Sulfite reductase [NADPH] hemoprotein beta-component (EC| 1.8.1.2) (SIR-HP) (SIRHP) Length = 570 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/52 (26%), Positives = 21/52 (40%) Frame = -1 Query: 372 LGGTPNQTXLAETFMNKVKLQDIEKVLEPLFSYWNSTRQEGESFGSFTNRMG 217 +GG T + F + +I ++ L W R E+FG F R G Sbjct: 505 IGGDRVGTRIPRLFRENITEDEILSEVDSLIGRWAKERDGKEAFGDFVVRAG 556 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,167,790 Number of Sequences: 219361 Number of extensions: 1044843 Number of successful extensions: 2843 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 2773 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2843 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
