ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags33n17 |
|---|---|
| Clone Library Name | barley_pub |
>PRP18_RAT (Q9JKB8) Pre-mRNA-splicing factor 18 (PRP18 homolog) (Potassium| channel regulatory factor) Length = 342 Score = 159 bits (402), Expect = 6e-39 Identities = 74/140 (52%), Positives = 104/140 (74%) Frame = -2 Query: 602 LDDMTELEKRTAKGKSMFATFKQCARYLSPLFEFCRKKVLPDDIRKALLFIVDCCMKRDY 423 L+ + KR+ +GK AT KQ YL PLF RK+ LP DI++++ I+ ++R+Y Sbjct: 203 LNSREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREY 262 Query: 422 LQAMDQYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRLM 243 ++A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++ VAH++NDET RKY+Q +KRLM Sbjct: 263 VKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLM 322 Query: 242 TLCQRRYPALPSKSVEFNSL 183 T+CQ+ +P PSK VE+N+L Sbjct: 323 TICQKHFPTDPSKCVEYNAL 342
>PRP18_MOUSE (Q8BM39) Pre-mRNA-splicing factor 18 (PRP18 homolog)| Length = 342 Score = 158 bits (400), Expect = 1e-38 Identities = 73/132 (55%), Positives = 101/132 (76%) Frame = -2 Query: 578 KRTAKGKSMFATFKQCARYLSPLFEFCRKKVLPDDIRKALLFIVDCCMKRDYLQAMDQYI 399 KR+ +GK AT KQ YL PLF RK+ LP DI++++ I+ ++R+Y++A D Y+ Sbjct: 211 KRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYL 270 Query: 398 KLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRLMTLCQRRYP 219 ++AIGNAPWPIGVTMVGIH R+ REKI++ VAH++NDET RKY+Q +KRLMT+CQ+ +P Sbjct: 271 QMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFP 330 Query: 218 ALPSKSVEFNSL 183 PSK VE+N+L Sbjct: 331 TDPSKCVEYNAL 342
>PRP18_HUMAN (Q99633) Pre-mRNA-splicing factor 18 (PRP18 homolog) (hPRP18)| Length = 342 Score = 158 bits (400), Expect = 1e-38 Identities = 73/132 (55%), Positives = 101/132 (76%) Frame = -2 Query: 578 KRTAKGKSMFATFKQCARYLSPLFEFCRKKVLPDDIRKALLFIVDCCMKRDYLQAMDQYI 399 KR+ +GK AT KQ YL PLF RK+ LP DI++++ I+ ++R+Y++A D Y+ Sbjct: 211 KRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYL 270 Query: 398 KLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRLMTLCQRRYP 219 ++AIGNAPWPIGVTMVGIH R+ REKI++ VAH++NDET RKY+Q +KRLMT+CQ+ +P Sbjct: 271 QMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFP 330 Query: 218 ALPSKSVEFNSL 183 PSK VE+N+L Sbjct: 331 TDPSKCVEYNAL 342
>PRP18_SCHPO (O94406) Pre-mRNA-splicing factor 18| Length = 343 Score = 102 bits (255), Expect = 7e-22 Identities = 50/121 (41%), Positives = 76/121 (62%) Frame = -2 Query: 572 TAKGKSMFATFKQCARYLSPLFEFCRKKVLPDDIRKALLFIVDCCMKRDYLQAMDQYIKL 393 +++ + F+Q + L L + + L DDI K++ I C K ++++A D Y++L Sbjct: 219 SSESQMQLKIFRQAKQDLDVLIQLIVDEALNDDIFKSIAEICYRCQKHEFVKANDMYLRL 278 Query: 392 AIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRLMTLCQRRYPAL 213 IGNAPWPIGVTMVGIHERSA +++ N ++I+ DE RK LQ++KR +T +R L Sbjct: 279 TIGNAPWPIGVTMVGIHERSAHQRLQANPSSNILKDEKKRKCLQALKRFITFQERESSNL 338 Query: 212 P 210 P Sbjct: 339 P 339
>PRP18_YEAST (P33411) Pre-mRNA-splicing factor 18| Length = 251 Score = 69.7 bits (169), Expect = 6e-12 Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Frame = -2 Query: 512 LFEFCRKKVLPDDIRKALLFIVDCCMKRDYLQAMDQYIKLAIGNAPWPIGVTMVGIHERS 333 L + R ++ PD + + ++ A+ Y+KL+IGN WPIGVT VGIH RS Sbjct: 147 LLQLRRNQLAPDLLISLATVLYHLQQPKEINLAVQSYMKLSIGNVAWPIGVTSVGIHARS 206 Query: 332 AREKIY-TNSVAHIMNDETTRKYLQSIKRLMT 240 A KI + A+IM DE TR ++ SIKRL+T Sbjct: 207 AHSKIQGGRNAANIMIDERTRLWITSIKRLIT 238
>MIAA_BURPS (Q63R58) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 324 Score = 32.7 bits (73), Expect = 0.83 Identities = 24/76 (31%), Positives = 38/76 (50%) Frame = -2 Query: 602 LDDMTELEKRTAKGKSMFATFKQCARYLSPLFEFCRKKVLPDDIRKALLFIVDCCMKRDY 423 LD T+ RT + K +FAT + C R L+ L + +P+ I +VDCC Sbjct: 262 LDGCTDY--RTMRDKGIFATRQLCKRQLTWL------RAMPERI------VVDCCAPDAT 307 Query: 422 LQAMDQYIKLAIGNAP 375 ++A+D ++ G AP Sbjct: 308 VRAVDALERVLDGRAP 323
>MIAA_BURMA (Q62HE6) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 324 Score = 32.7 bits (73), Expect = 0.83 Identities = 24/76 (31%), Positives = 38/76 (50%) Frame = -2 Query: 602 LDDMTELEKRTAKGKSMFATFKQCARYLSPLFEFCRKKVLPDDIRKALLFIVDCCMKRDY 423 LD T+ RT + K +FAT + C R L+ L + +P+ I +VDCC Sbjct: 262 LDGCTDY--RTMRDKGIFATRQLCKRQLTWL------RAMPERI------VVDCCAPDAT 307 Query: 422 LQAMDQYIKLAIGNAP 375 ++A+D ++ G AP Sbjct: 308 VRAVDALERVLDGRAP 323
>BRO1_USTMA (Q4PHA8) Vacuolar protein-sorting protein BRO1 (BRO| domain-containing protein 1) Length = 1076 Score = 32.3 bits (72), Expect = 1.1 Identities = 25/81 (30%), Positives = 40/81 (49%) Frame = -2 Query: 353 VGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRLMTLCQRRYPALPSKSVEFNSLANG 174 +G+HE+++ +Y+ A I E+ R L + + +L Y LPS ++ +LA G Sbjct: 382 LGVHEKAS---LYSEEKAKIARAESERHDLATGEMQASL---DYLGLPSSLQKYRALAQG 435 Query: 173 SDLQALLSEEKDPTKGPSEER 111 S A+L DP GP R Sbjct: 436 SGSNAMLDSLADP--GPEVMR 454
>MSI3_ARATH (O22469) WD-40 repeat protein MSI3| Length = 424 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = +1 Query: 28 ITQRPQTSICDPSLWLKHHSFDA-GISRSLSSEGPFVGSFSSDRRAC 165 ++ +PQTS CDP L L H + G++ S EG ++ S S D+R C Sbjct: 150 LSGKPQTSECDPDLRLMGHEQEGYGLAWSSFKEG-YLLSGSQDQRIC 195
>MOT6_HUMAN (O15375) Monocarboxylate transporter 6 (MCT 6) (MCT 5)| Length = 505 Score = 31.6 bits (70), Expect = 1.8 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +1 Query: 325 SRAERSWIPTIVTPIGHGAFPMASLMYWSIACK 423 S +E SW P+I+T + H A P+ S++ C+ Sbjct: 48 SNSETSWFPSILTAVLHMAGPLCSILVGRFGCR 80
>XPP2_HUMAN (O43895) Xaa-Pro aminopeptidase 2 precursor (EC 3.4.11.9) (X-Pro| aminopeptidase 2) (Membrane-bound aminopeptidase P) (Membrane-bound APP) (Membrane-bound AmP) (mAmP) (Aminoacylproline aminopeptidase) Length = 674 Score = 30.0 bits (66), Expect = 5.4 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = -2 Query: 443 CCMKRDYLQAMDQYIKLAIGNAPWPIGV--TMVGIHERSAREKIYTNSVAHIM 291 C DY Q D ++G+ IG TM GI+E +EK+ T++ + +M Sbjct: 299 CVQIEDYSQVRDSIQAYSLGDVRIWIGTSYTMYGIYEMIPKEKLVTDTYSPVM 351
>ASE1_YEAST (P50275) Anaphase spindle elongation protein| Length = 885 Score = 29.6 bits (65), Expect = 7.0 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Frame = -2 Query: 422 LQAMDQYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSIKRLM 243 L + Y+ L I N IG++M I + R+ I S +N+E+ + + IK Sbjct: 265 LSTLTAYL-LQIENGKGDIGLSMKFIIDN--RKDILKGSAFKTINEESVKHMNEVIKIYE 321 Query: 242 TLCQRRYPALPSKSVEFNSLAN--GSDLQALLSEE 144 +RR+ ++ +K V +S+ G+ L L+ E+ Sbjct: 322 EEYERRFKSVLTKKVSISSICEQLGTPLATLIGED 356
>SC23B_MOUSE (Q9D662) Protein transport protein Sec23B (SEC23-related protein B)| Length = 767 Score = 29.3 bits (64), Expect = 9.2 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 8/93 (8%) Frame = -2 Query: 458 LFIVDCCMKRDYLQAMDQYIKLAIGNAPWPIGV------TMVGIHERSAR--EKIYTNSV 303 L++VD C++ D LQA+ + +++++ P V MV +HE S K Y Sbjct: 132 LYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCEGISKSYVFRG 191 Query: 302 AHIMNDETTRKYLQSIKRLMTLCQRRYPALPSK 204 + + ++ L K M + Q R PA P + Sbjct: 192 TKDLTAKQIQEMLGLTKSAMPVQQAR-PAQPQE 223
>DDBX_BOVIN (P52898) Dihydrodiol dehydrogenase 3 (EC 1.-.-.-) (Prostaglandin F| synthase) Length = 323 Score = 29.3 bits (64), Expect = 9.2 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +3 Query: 144 LLR*KGLQVTPICQAVELH*FGGQSRIAPLAKGH 245 +L GL+ P+C VE H + QS++ K H Sbjct: 176 ILNKPGLKYKPVCNQVECHPYFNQSKLLDFCKSH 209 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,399,576 Number of Sequences: 219361 Number of extensions: 2001866 Number of successful extensions: 5626 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5449 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5623 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
