ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33n15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_194076.2| Oryza sativa (japonica cultivar-group), mRNA 188 2e-44
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 188 2e-44
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 188 2e-44
4gb|AC090874.9| Oryza sativa chromosome 3 BAC OJ1523_A02 genomic ... 188 2e-44
5gb|AF294725.1|AF294725 Oryza sativa reversibly glycosylated poly... 188 2e-44
6emb|Y18624.1|OSA18624 Oryza sativa mRNA for reversibly glycosyla... 188 2e-44
7dbj|AK098933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 2e-44
8dbj|AK061813.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 2e-44
9emb|Y18626.1|TAE18626 Triticum aestivum mRNA for reversibly glyc... 174 2e-40
10gb|AY112484.1| Zea mays CL1948_2 mRNA sequence 149 1e-32
11emb|AJ011078.1|OSA011078 Oryza sativa mRNA for RGP1 protein 129 1e-26
12gb|BT017085.1| Zea mays clone EL01N0360E12.c mRNA sequence 125 2e-25
13gb|AY111237.1| Zea mays CL1948_1 mRNA sequence 125 2e-25
14gb|U89897.1|ZMU89897 Zea mays golgi associated protein se-wap41 ... 125 2e-25
15ref|XM_479089.1| Oryza sativa (japonica cultivar-group), mRNA 60 1e-05
16dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
17dbj|AP005175.4| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
18dbj|AK061294.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 1e-05
19gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence 52 0.002
20ref|XM_951880.1| Neurospora crassa OR74A hypothetical protein (N... 46 0.15
21ref|XM_327962.1| Neurospora crassa OR74A hypothetical protein (N... 46 0.15
22emb|AL670003.1|NCB9G16 Neurospora crassa DNA linkage group II BA... 46 0.15
23emb|AJ223252.2|SOT223252 Solanum tuberosum mRNA for UDP-glucose:... 44 0.58
24dbj|D14047.1|VIBICD Vibrio sp. genes for isocitrate dehydrogenas... 44 0.58
25ref|XM_001002588.1| PREDICTED: Mus musculus thyroid hormone rece... 42 2.3
26ref|XM_914330.2| PREDICTED: Mus musculus thyroid hormone recepto... 42 2.3
27ref|XM_109726.8| PREDICTED: Mus musculus thyroid hormone recepto... 42 2.3
28gb|AC011299.3| Homo sapiens BAC clone RP11-232C20 from 7, comple... 42 2.3
29gb|AY225142.1| Feldmannia irregularis virus a strain FirrV-1 con... 42 2.3
30emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete ... 42 2.3
31emb|BX640435.1| Bordetella parapertussis strain 12822, complete ... 42 2.3
32emb|BX640412.1| Bordetella pertussis strain Tohama I, complete g... 42 2.3
33emb|AL592065.7| Mouse DNA sequence from clone RP23-50E4 on chrom... 42 2.3
34gb|AC018628.13| Homo sapiens chromosome 17, clone RP11-342K2, co... 42 2.3
35gb|AC060798.10| Homo sapiens chromosome 17, clone RP11-615P24, c... 42 2.3
36gb|AC112249.4| Homo sapiens BAC clone RP11-688H10 from 4, comple... 42 2.3
37dbj|AK037303.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 42 2.3
38dbj|AB011165.2| Homo sapiens mRNA for KIAA0593 protein, partial cds 42 2.3
39gb|AF117754.1|AF117754 Homo sapiens thyroid hormone receptor-ass... 42 2.3
40gb|DQ176278.1| Anochetus sp. BLF m2 voucher CASENT0053696-D01 cy... 42 2.3
41gb|DQ176258.1| Anochetus sp. BLF m2 voucher CASENT0053760-D01 cy... 42 2.3
42gb|DQ176256.1| Anochetus sp. BLF m2 voucher CASENT0053776-D01 cy... 42 2.3
43gb|DQ176248.1| Anochetus sp. BLF m1 voucher CASENT0053785-D01 cy... 42 2.3
44gb|DQ176221.1| Anochetus sp. BLF m1 voucher CASENT0053814-D01 cy... 42 2.3
45gb|DQ176193.1| Anochetus sp. BLF m2 voucher CASENT0053870-D01 cy... 42 2.3
46gb|DQ176184.1| Anochetus sp. BLF m1 voucher CASENT0053884-D01 cy... 42 2.3
47gb|DQ176183.1| Anochetus sp. BLF m2 voucher CASENT0053944-D01 cy... 42 2.3
48ref|NM_005121.1| Homo sapiens thyroid hormone receptor associate... 42 2.3
49emb|AL844151.3| Mouse DNA sequence from clone RP23-73O7 on chrom... 42 2.3
50emb|AL645857.11| Mouse DNA sequence from clone RP23-167N2 on chr... 42 2.3
51gb|AY622990.1| Lycopersicon esculentum UDP-glucose:protein trans... 40 9.0
52ref|XM_640234.1| Dictyostelium discoideum hypothetical protein (... 40 9.0
53ref|XM_635556.1| Dictyostelium discoideum hypothetical protein (... 40 9.0
54ref|XM_515469.1| PREDICTED: Pan troglodytes LOC459225 (LOC459225... 40 9.0
55ref|NM_004801.2| Homo sapiens neurexin 1 (NRXN1), transcript var... 40 9.0
56gb|AF253417.1| Homo sapiens microsomal epoxide hydrolase (EPHX1)... 40 9.0
57ref|NM_174404.2| Bos taurus neurexin 1 (NRXN1), mRNA 40 9.0
58ref|XM_865667.1| PREDICTED: Bos taurus similar to neurexin 1 iso... 40 9.0
59gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, co... 40 9.0
60gb|BT012716.1| Lycopersicon esculentum clone 113599F, mRNA sequence 40 9.0
61gb|BC046631.1| Homo sapiens neurexin 1, mRNA (cDNA clone IMAGE:4... 40 9.0
62ref|XM_847010.1| PREDICTED: Canis familiaris similar to neurexin... 40 9.0
63ref|XM_859895.1| PREDICTED: Canis familiaris similar to neurexin... 40 9.0
64ref|XM_531818.2| PREDICTED: Canis familiaris similar to neurexin... 40 9.0
65gb|AC121966.2| Mus musculus BAC clone RP24-267N15 from 12, compl... 40 9.0
66gb|AC142349.1| Pan troglodytes BAC clone RP43-9F6 from 7, comple... 40 9.0
67emb|AL451081.5| Human DNA sequence from clone RP11-302I18 on chr... 40 9.0
68emb|AL035468.3|HS424E5 Human DNA sequence from clone RP3-424E5 o... 40 9.0
69ref|XM_964572.1| PREDICTED: Tribolium castaneum similar to CG121... 40 9.0
70emb|AJ719696.1| Gallus gallus mRNA for hypothetical protein, clo... 40 9.0
71ref|NM_001006185.1| Gallus gallus DEAD (Asp-Glu-Ala-Asp) box pol... 40 9.0
72dbj|AK124726.1| Homo sapiens cDNA FLJ42736 fis, clone BRAWH20158... 40 9.0
73gb|AC092354.2| Homo sapiens chromosome 5 clone RP11-307L14, comp... 40 9.0
74gb|AC020687.6| Homo sapiens chromosome 15, clone RP11-648K4, com... 40 9.0
75gb|AC091986.3| Homo sapiens chromosome 5 clone RP11-68K1, comple... 40 9.0
76gb|AC010267.7| Homo sapiens chromosome 5 clone CTC-472C24, compl... 40 9.0
77gb|AC007682.3| Homo sapiens BAC clone RP11-391D19 from 2, comple... 40 9.0
78gb|AC115604.2| Dictyostelium discoideum chromosome 2 map 4354771... 40 9.0
79gb|AC026431.3|AC026431 Homo sapiens chromosome 5 clone CTD-2222F... 40 9.0
80ref|XM_220813.3| PREDICTED: Rattus norvegicus thyroid hormone re... 40 9.0
81gb|AC099066.3| Homo sapiens chromosome 1 clone RP11-145A3, compl... 40 9.0
82emb|AL935324.8| Zebrafish DNA sequence from clone CH211-197B6 in... 40 9.0
83gb|AC155927.2| Mus musculus BAC clone RP24-133E20 from 12, compl... 40 9.0
84emb|CR855192.10| Zebrafish DNA sequence from clone DKEY-202P3 in... 40 9.0
85emb|AL935208.8| Zebrafish DNA sequence from clone CH211-241N17, ... 40 9.0
86gb|AC140250.3| Mus musculus BAC clone RP24-288J3 from 1, complet... 40 9.0
87emb|AL627125.8| Mouse DNA sequence from clone RP23-466N19 on chr... 40 9.0
88gb|L14855.1|BOVNEURXIA Bos taurus neurexin I-alpha mRNA, complet... 40 9.0
89dbj|AB035356.1| Homo sapiens mRNA for neurexin I-alpha protein, ... 40 9.0
90dbj|AB011150.2| Homo sapiens mRNA for KIAA0578 protein, partial cds 40 9.0 
>ref|NM_194076.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1519

 Score =  188 bits (95), Expect = 2e-44
 Identities = 149/167 (89%)
 Strand = Plus / Minus

                                                                        
Query: 494  tcccaggcctcgatccaggtgaccatggcgtcggcgagcttgacgaagtatgggtcgatc 553
            ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 1135 tcccaggcctcgatccaggtgaccatggcatcggcaagcttgacgaagtaggggtcgatc 1076

                                                                        
Query: 554  ttgccgagcttctccttgacctgctgcgagagcgagatgtagcacttctgcacggtgtcg 613
            ||||||||||||||| |||||||||  | ||| |||| |||||||||||| |||||||||
Sbjct: 1075 ttgccgagcttctccctgacctgctcggcgagggagaggtagcacttctggacggtgtcg 1016

                                                           
Query: 614  cactccttggtcagcttcgcggcctggaagaaggggatgatgtcctc 660
            ||||||||||  |   | |||  ||||||||||||||||||||||||
Sbjct: 1015 cactccttggggatggtggcgttctggaagaaggggatgatgtcctc 969
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  188 bits (95), Expect = 2e-44
 Identities = 149/167 (89%)
 Strand = Plus / Plus

                                                                            
Query: 494      tcccaggcctcgatccaggtgaccatggcgtcggcgagcttgacgaagtatgggtcgatc 553
                ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 22189585 tcccaggcctcgatccaggtgaccatggcatcggcaagcttgacgaagtaggggtcgatc 22189644

                                                                            
Query: 554      ttgccgagcttctccttgacctgctgcgagagcgagatgtagcacttctgcacggtgtcg 613
                ||||||||||||||| |||||||||  | ||| |||| |||||||||||| |||||||||
Sbjct: 22189645 ttgccgagcttctccctgacctgctcggcgagggagaggtagcacttctggacggtgtcg 22189704

                                                               
Query: 614      cactccttggtcagcttcgcggcctggaagaaggggatgatgtcctc 660
                ||||||||||  |   | |||  ||||||||||||||||||||||||
Sbjct: 22189705 cactccttggggatggtggcgttctggaagaaggggatgatgtcctc 22189751
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  188 bits (95), Expect = 2e-44
 Identities = 149/167 (89%)
 Strand = Plus / Plus

                                                                            
Query: 494      tcccaggcctcgatccaggtgaccatggcgtcggcgagcttgacgaagtatgggtcgatc 553
                ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 22182614 tcccaggcctcgatccaggtgaccatggcatcggcaagcttgacgaagtaggggtcgatc 22182673

                                                                            
Query: 554      ttgccgagcttctccttgacctgctgcgagagcgagatgtagcacttctgcacggtgtcg 613
                ||||||||||||||| |||||||||  | ||| |||| |||||||||||| |||||||||
Sbjct: 22182674 ttgccgagcttctccctgacctgctcggcgagggagaggtagcacttctggacggtgtcg 22182733

                                                               
Query: 614      cactccttggtcagcttcgcggcctggaagaaggggatgatgtcctc 660
                ||||||||||  |   | |||  ||||||||||||||||||||||||
Sbjct: 22182734 cactccttggggatggtggcgttctggaagaaggggatgatgtcctc 22182780
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>gb|AC090874.9| Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete
             sequence
          Length = 132987

 Score =  188 bits (95), Expect = 2e-44
 Identities = 149/167 (89%)
 Strand = Plus / Minus

                                                                         
Query: 494   tcccaggcctcgatccaggtgaccatggcgtcggcgagcttgacgaagtatgggtcgatc 553
             ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 35277 tcccaggcctcgatccaggtgaccatggcatcggcaagcttgacgaagtaggggtcgatc 35218

                                                                         
Query: 554   ttgccgagcttctccttgacctgctgcgagagcgagatgtagcacttctgcacggtgtcg 613
             ||||||||||||||| |||||||||  | ||| |||| |||||||||||| |||||||||
Sbjct: 35217 ttgccgagcttctccctgacctgctcggcgagggagaggtagcacttctggacggtgtcg 35158

                                                            
Query: 614   cactccttggtcagcttcgcggcctggaagaaggggatgatgtcctc 660
             ||||||||||  |   | |||  ||||||||||||||||||||||||
Sbjct: 35157 cactccttggggatggtggcgttctggaagaaggggatgatgtcctc 35111
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>gb|AF294725.1|AF294725 Oryza sativa reversibly glycosylated polypeptide mRNA, complete cds
          Length = 1136

 Score =  188 bits (95), Expect = 2e-44
 Identities = 149/167 (89%)
 Strand = Plus / Minus

                                                                        
Query: 494  tcccaggcctcgatccaggtgaccatggcgtcggcgagcttgacgaagtatgggtcgatc 553
            ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 1070 tcccaggcctcgatccaggtgaccatggcatcggcaagcttgacgaagtaggggtcgatc 1011

                                                                        
Query: 554  ttgccgagcttctccttgacctgctgcgagagcgagatgtagcacttctgcacggtgtcg 613
            ||||||||||||||| |||||||||  | ||| |||| |||||||||||| |||||||||
Sbjct: 1010 ttgccgagcttctccctgacctgctcggcgagggagaggtagcacttctggacggtgtcg 951

                                                           
Query: 614  cactccttggtcagcttcgcggcctggaagaaggggatgatgtcctc 660
            ||||||||||  |   | |||  ||||||||||||||||||||||||
Sbjct: 950  cactccttggggatggtggcgttctggaagaaggggatgatgtcctc 904
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>emb|Y18624.1|OSA18624 Oryza sativa mRNA for reversibly glycosylated polypeptide
          Length = 1384

 Score =  188 bits (95), Expect = 2e-44
 Identities = 149/167 (89%)
 Strand = Plus / Minus

                                                                        
Query: 494  tcccaggcctcgatccaggtgaccatggcgtcggcgagcttgacgaagtatgggtcgatc 553
            ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 1119 tcccaggcctcgatccaggtgaccatggcatcggcaagcttgacgaagtaggggtcgatc 1060

                                                                        
Query: 554  ttgccgagcttctccttgacctgctgcgagagcgagatgtagcacttctgcacggtgtcg 613
            ||||||||||||||| |||||||||  | ||| |||| |||||||||||| |||||||||
Sbjct: 1059 ttgccgagcttctccctgacctgctcggcgagggagaggtagcacttctggacggtgtcg 1000

                                                           
Query: 614  cactccttggtcagcttcgcggcctggaagaaggggatgatgtcctc 660
            ||||||||||  |   | |||  ||||||||||||||||||||||||
Sbjct: 999  cactccttggggatggtggcgttctggaagaaggggatgatgtcctc 953
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>dbj|AK098933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029G13, full
            insert sequence
          Length = 1492

 Score =  188 bits (95), Expect = 2e-44
 Identities = 149/167 (89%)
 Strand = Plus / Minus

                                                                        
Query: 494  tcccaggcctcgatccaggtgaccatggcgtcggcgagcttgacgaagtatgggtcgatc 553
            ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 1139 tcccaggcctcgatccaggtgaccatggcatcggcaagcttgacgaagtaggggtcgatc 1080

                                                                        
Query: 554  ttgccgagcttctccttgacctgctgcgagagcgagatgtagcacttctgcacggtgtcg 613
            ||||||||||||||| |||||||||  | ||| |||| |||||||||||| |||||||||
Sbjct: 1079 ttgccgagcttctccctgacctgctcggcgagggagaggtagcacttctggacggtgtcg 1020

                                                           
Query: 614  cactccttggtcagcttcgcggcctggaagaaggggatgatgtcctc 660
            ||||||||||  |   | |||  ||||||||||||||||||||||||
Sbjct: 1019 cactccttggggatggtggcgttctggaagaaggggatgatgtcctc 973
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>dbj|AK061813.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B03, full
            insert sequence
          Length = 1509

 Score =  188 bits (95), Expect = 2e-44
 Identities = 149/167 (89%)
 Strand = Plus / Minus

                                                                        
Query: 494  tcccaggcctcgatccaggtgaccatggcgtcggcgagcttgacgaagtatgggtcgatc 553
            ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 1138 tcccaggcctcgatccaggtgaccatggcatcggcaagcttgacgaagtaggggtcgatc 1079

                                                                        
Query: 554  ttgccgagcttctccttgacctgctgcgagagcgagatgtagcacttctgcacggtgtcg 613
            ||||||||||||||| |||||||||  | ||| |||| |||||||||||| |||||||||
Sbjct: 1078 ttgccgagcttctccctgacctgctcggcgagggagaggtagcacttctggacggtgtcg 1019

                                                           
Query: 614  cactccttggtcagcttcgcggcctggaagaaggggatgatgtcctc 660
            ||||||||||  |   | |||  ||||||||||||||||||||||||
Sbjct: 1018 cactccttggggatggtggcgttctggaagaaggggatgatgtcctc 972
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>emb|Y18626.1|TAE18626 Triticum aestivum mRNA for reversibly glycosylated polypeptide
          Length = 1393

 Score =  174 bits (88), Expect = 2e-40
 Identities = 148/168 (88%)
 Strand = Plus / Minus

                                                                        
Query: 493  gtcccaggcctcgatccaggtgaccatggcgtcggcgagcttgacgaagtatgggtcgat 552
            |||||||||||||||||||||||||||||| || || ||||| |||||||| ||||| ||
Sbjct: 1125 gtcccaggcctcgatccaggtgaccatggcatcagcaagcttcacgaagtaagggtcaat 1066

                                                                        
Query: 553  cttgccgagcttctccttgacctgctgcgagagcgagatgtagcacttctgcacggtgtc 612
            |||||| ||||||||||||||||||| |||||| ||||||||||||||||| || |||||
Sbjct: 1065 cttgccaagcttctccttgacctgctccgagagtgagatgtagcacttctggactgtgtc 1006

                                                            
Query: 613  gcactccttggtcagcttcgcggcctggaagaaggggatgatgtcctc 660
             ||||||||||  ||    |||  ||||||||||||||||||||||||
Sbjct: 1005 acactccttggagagggaggcgttctggaagaaggggatgatgtcctc 958
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>gb|AY112484.1| Zea mays CL1948_2 mRNA sequence
          Length = 758

 Score =  149 bits (75), Expect = 1e-32
 Identities = 144/167 (86%)
 Strand = Plus / Minus

                                                                       
Query: 494 tcccaggcctcgatccaggtgaccatggcgtcggcgagcttgacgaagtatgggtcgatc 553
           ||||||||||||||||||||||||||||||||  |||||||| | ||||| |||||||||
Sbjct: 405 tcccaggcctcgatccaggtgaccatggcgtcaccgagcttggcaaagtaggggtcgatc 346

                                                                       
Query: 554 ttgccgagcttctccttgacctgctgcgagagcgagatgtagcacttctgcacggtgtcg 613
           ||||| ||||||||||| |||||    |||||  |||||||||||||||| |||||||||
Sbjct: 345 ttgccaagcttctccttcacctgtccagagaggtagatgtagcacttctggacggtgtcg 286

                                                          
Query: 614 cactccttggtcagcttcgcggcctggaagaaggggatgatgtcctc 660
           || |||||||  |   || ||  ||||||||||||||||||||||||
Sbjct: 285 caatccttgggaatggtcacgttctggaagaaggggatgatgtcctc 239
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>emb|AJ011078.1|OSA011078 Oryza sativa mRNA for RGP1 protein
          Length = 1310

 Score =  129 bits (65), Expect = 1e-26
 Identities = 146/169 (86%), Gaps = 3/169 (1%)
 Strand = Plus / Minus

                                                                        
Query: 494  tcccaggcctcgatccaggtgaccatggcgtcggcgagcttgacgaagtatgggtcgatc 553
            ||||||||||||||||||||||||||||| ||||| |||||||| || || |||||||||
Sbjct: 1124 tcccaggcctcgatccaggtgaccatggcatcggcaagcttgac-aaataggggtcgatc 1066

                                                                        
Query: 554  ttgccgagcttctccttgacctgct-gcgagagcgagatgtagc-acttctgcacggtgt 611
            ||||||||||||||| ||||||||| | | ||| |||| ||||| | || || |||||||
Sbjct: 1065 ttgccgagcttctccctgacctgctcgggcgagggagaggtagcaatttttggacggtgt 1006

                                                             
Query: 612  cgcactccttggtcagcttcgcggcctggaagaaggggatgatgtcctc 660
            ||||||||||||  |   | |||  ||||||||||||||||||||||||
Sbjct: 1005 cgcactccttggggatggtggcgttctggaagaaggggatgatgtcctc 957
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>gb|BT017085.1| Zea mays clone EL01N0360E12.c mRNA sequence
          Length = 1383

 Score =  125 bits (63), Expect = 2e-25
 Identities = 141/167 (84%)
 Strand = Plus / Minus

                                                                        
Query: 494  tcccaggcctcgatccaggtgaccatggcgtcggcgagcttgacgaagtatgggtcgatc 553
            ||||||||||||||||||||||||||||||||  |||||||||| ||||| ||||| |||
Sbjct: 1120 tcccaggcctcgatccaggtgaccatggcgtcaccgagcttgacaaagtaggggtcaatc 1061

                                                                        
Query: 554  ttgccgagcttctccttgacctgctgcgagagcgagatgtagcacttctgcacggtgtcg 613
             |||| ||||||||||| || ||    |||||  ||||||||||||| || |||||||||
Sbjct: 1060 gtgcccagcttctccttcacttgtccagagaggtagatgtagcacttttggacggtgtcg 1001

                                                           
Query: 614  cactccttggtcagcttcgcggcctggaagaaggggatgatgtcctc 660
            || |||||||  |   || ||  ||||||||||||||||||||||||
Sbjct: 1000 cagtccttggggatggtcacgttctggaagaaggggatgatgtcctc 954
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>gb|AY111237.1| Zea mays CL1948_1 mRNA sequence
          Length = 1481

 Score =  125 bits (63), Expect = 2e-25
 Identities = 141/167 (84%)
 Strand = Plus / Minus

                                                                        
Query: 494  tcccaggcctcgatccaggtgaccatggcgtcggcgagcttgacgaagtatgggtcgatc 553
            ||||||||||||||||||||||||||||||||  |||||||||| ||||| ||||| |||
Sbjct: 1127 tcccaggcctcgatccaggtgaccatggcgtcaccgagcttgacaaagtaggggtcaatc 1068

                                                                        
Query: 554  ttgccgagcttctccttgacctgctgcgagagcgagatgtagcacttctgcacggtgtcg 613
             |||| ||||||||||| || ||    |||||  ||||||||||||| || |||||||||
Sbjct: 1067 gtgcccagcttctccttcacttgtccagagaggtagatgtagcacttttggacggtgtcg 1008

                                                           
Query: 614  cactccttggtcagcttcgcggcctggaagaaggggatgatgtcctc 660
            || |||||||  |   || ||  ||||||||||||||||||||||||
Sbjct: 1007 cagtccttggggatggtcacgttctggaagaaggggatgatgtcctc 961
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>gb|U89897.1|ZMU89897 Zea mays golgi associated protein se-wap41 mRNA, complete cds
          Length = 1480

 Score =  125 bits (63), Expect = 2e-25
 Identities = 141/167 (84%)
 Strand = Plus / Minus

                                                                        
Query: 494  tcccaggcctcgatccaggtgaccatggcgtcggcgagcttgacgaagtatgggtcgatc 553
            ||||||||||||||||||||||||||||||||  |||||||||| ||||| ||||| |||
Sbjct: 1156 tcccaggcctcgatccaggtgaccatggcgtcaccgagcttgacaaagtaggggtcaatc 1097

                                                                        
Query: 554  ttgccgagcttctccttgacctgctgcgagagcgagatgtagcacttctgcacggtgtcg 613
             |||| ||||||||||| || ||    |||||  ||||||||||||| || |||||||||
Sbjct: 1096 gtgcccagcttctccttcacttgtccagagaggtagatgtagcacttttggacggtgtcg 1037

                                                           
Query: 614  cactccttggtcagcttcgcggcctggaagaaggggatgatgtcctc 660
            || |||||||  |   || ||  ||||||||||||||||||||||||
Sbjct: 1036 cagtccttggggatggtcacgttctggaagaaggggatgatgtcctc 990
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>ref|XM_479089.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1407

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 494  tcccaggcctcgatccaggtgaccatggcgtcggcgagcttg 535
            ||||||||||| ||||| |||||||||| |||||||||||||
Sbjct: 1090 tcccaggcctcaatccatgtgaccatggagtcggcgagcttg 1049
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 494      tcccaggcctcgatccaggtgaccatggcgtcggcgagcttg 535
                ||||||||||| ||||| |||||||||| |||||||||||||
Sbjct: 24722622 tcccaggcctcaatccatgtgaccatggagtcggcgagcttg 24722581
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>dbj|AP005175.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0040H10
          Length = 132919

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 494   tcccaggcctcgatccaggtgaccatggcgtcggcgagcttg 535
             ||||||||||| ||||| |||||||||| |||||||||||||
Sbjct: 78559 tcccaggcctcaatccatgtgaccatggagtcggcgagcttg 78518
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>dbj|AK061294.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D01, full
            insert sequence
          Length = 1407

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 494  tcccaggcctcgatccaggtgaccatggcgtcggcgagcttg 535
            ||||||||||| ||||| |||||||||| |||||||||||||
Sbjct: 1090 tcccaggcctcaatccatgtgaccatggagtcggcgagcttg 1049
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>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence
          Length = 141360

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 128/162 (79%)
 Strand = Plus / Minus

                                                                        
Query: 493  gtcccaggcctcgatccaggtgaccatggcgtcggcgagcttgacgaagtatgggtcgat 552
            |||||| || |||||||| ||||||||||| || |  |||||| ||||||| ||||| ||
Sbjct: 4606 gtcccaagcttcgatccaagtgaccatggcctctgacagcttgtcgaagtaggggtctat 4547

                                                                        
Query: 553  cttgccgagcttctccttgacctgctgcgagagcgagatgtagcacttctgcacggtgtc 612
              |||  ||||||||||| |||  ||  ||||||  ||||||||| | ||| ||||||  
Sbjct: 4546 ggtgcttagcttctccttcaccaacttggagagctcgatgtagcattgctgaacggtggt 4487

                                                      
Query: 613  gcactccttggtcagcttcgcggcctggaagaaggggatgat 654
            |||||| || |  |||||| ||  ||||||||| ||||||||
Sbjct: 4486 gcactctttcggaagcttcacgttctggaagaaagggatgat 4445
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>ref|XM_951880.1| Neurospora crassa OR74A hypothetical protein (NCU01524.1) partial
           mRNA
          Length = 978

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 548 tcgatcttgccgagcttctccttgacctgct 578
           |||| |||||||||| |||||||||||||||
Sbjct: 914 tcgagcttgccgagcctctccttgacctgct 884
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>ref|XM_327962.1| Neurospora crassa OR74A hypothetical protein (NCU01524.1) partial
           mRNA
          Length = 978

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 548 tcgatcttgccgagcttctccttgacctgct 578
           |||| |||||||||| |||||||||||||||
Sbjct: 914 tcgagcttgccgagcctctccttgacctgct 884
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>emb|AL670003.1|NCB9G16 Neurospora crassa DNA linkage group II BAC clone B9G16
          Length = 69187

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 548   tcgatcttgccgagcttctccttgacctgct 578
             |||| |||||||||| |||||||||||||||
Sbjct: 34156 tcgagcttgccgagcctctccttgacctgct 34126
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>emb|AJ223252.2|SOT223252 Solanum tuberosum mRNA for UDP-glucose:protein transglucosylase
           (uptg1 gene)
          Length = 1392

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 635 gcctggaagaaggggatgatgtcctc 660
           |||||||||||||||||||| |||||
Sbjct: 906 gcctggaagaaggggatgatctcctc 881
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>dbj|D14047.1|VIBICD Vibrio sp. genes for isocitrate dehydrogenase isozymes IDH-I and
            IDH-II, complete cds
          Length = 4247

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 97   tttattcaacaaccttttattc 118
            ||||||||||||||||||||||
Sbjct: 2538 tttattcaacaaccttttattc 2517
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>ref|XM_001002588.1| PREDICTED: Mus musculus thyroid hormone receptor associated protein 1
            (Thrap1), mRNA
          Length = 11787

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 467  tccttggagtccttggagttg 487
            |||||||||||||||||||||
Sbjct: 3046 tccttggagtccttggagttg 3026
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>ref|XM_914330.2| PREDICTED: Mus musculus thyroid hormone receptor associated protein
            1, transcript variant 6 (Thrap1), mRNA
          Length = 11727

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 467  tccttggagtccttggagttg 487
            |||||||||||||||||||||
Sbjct: 2986 tccttggagtccttggagttg 2966
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>ref|XM_109726.8| PREDICTED: Mus musculus thyroid hormone receptor associated protein
            1, transcript variant 1 (Thrap1), mRNA
          Length = 11787

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 467  tccttggagtccttggagttg 487
            |||||||||||||||||||||
Sbjct: 3046 tccttggagtccttggagttg 3026
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>gb|AC011299.3| Homo sapiens BAC clone RP11-232C20 from 7, complete sequence
          Length = 147712

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 107   aaccttttattctcacatttc 127
             |||||||||||||||||||||
Sbjct: 46283 aaccttttattctcacatttc 46263
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>gb|AY225142.1| Feldmannia irregularis virus a strain FirrV-1 contig J, partial
           sequence
          Length = 1702

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 467 tccttggagtccttggagttg 487
           |||||||||||||||||||||
Sbjct: 488 tccttggagtccttggagttg 468
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>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16
          Length = 346287

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 517    catggcgtcggcgagcttgacgaag 541
              |||||||||||||| ||||||||||
Sbjct: 307938 catggcgtcggcgaccttgacgaag 307914
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>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14
          Length = 346259

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 517    catggcgtcggcgagcttgacgaag 541
              |||||||||||||| ||||||||||
Sbjct: 226822 catggcgtcggcgaccttgacgaag 226798
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>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12
          Length = 348171

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 517   catggcgtcggcgagcttgacgaag 541
             |||||||||||||| ||||||||||
Sbjct: 21850 catggcgtcggcgaccttgacgaag 21874
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>emb|AL592065.7| Mouse DNA sequence from clone RP23-50E4 on chromosome 11 Contains the
             3' end of a novel gene, two novel genes, the 5' end of the
             Brip1 gene for BRCA1 interacting protein C-terminal
             helicase 1 and a mitochondrial F0 complex H+ transporting
             ATP synthase subunit g (Atp5l) pseudogene, complete
             sequence
          Length = 200624

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 467   tccttggagtccttggagttg 487
             |||||||||||||||||||||
Sbjct: 16000 tccttggagtccttggagttg 15980
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>gb|AC018628.13| Homo sapiens chromosome 17, clone RP11-342K2, complete sequence
          Length = 104030

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 467   tccttggagtccttggagttg 487
             |||||||||||||||||||||
Sbjct: 58265 tccttggagtccttggagttg 58245
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>gb|AC060798.10| Homo sapiens chromosome 17, clone RP11-615P24, complete sequence
          Length = 171994

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 467    tccttggagtccttggagttg 487
              |||||||||||||||||||||
Sbjct: 168564 tccttggagtccttggagttg 168584
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>gb|AC112249.4| Homo sapiens BAC clone RP11-688H10 from 4, complete sequence
          Length = 146551

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 221  atgaaattaaagaaggggaaa 241
            |||||||||||||||||||||
Sbjct: 9860 atgaaattaaagaaggggaaa 9880
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>dbj|AK037303.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
           enriched library, clone:A130004J07 product:thyroid
           hormone receptor associated protein 1, full insert
           sequence
          Length = 3958

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 467 tccttggagtccttggagttg 487
           |||||||||||||||||||||
Sbjct: 256 tccttggagtccttggagttg 236
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>dbj|AB011165.2| Homo sapiens mRNA for KIAA0593 protein, partial cds
          Length = 8099

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 467  tccttggagtccttggagttg 487
            |||||||||||||||||||||
Sbjct: 2544 tccttggagtccttggagttg 2524
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>gb|AF117754.1|AF117754 Homo sapiens thyroid hormone receptor-associated protein complex
            component TRAP240 mRNA, complete cds
          Length = 7389

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 467  tccttggagtccttggagttg 487
            |||||||||||||||||||||
Sbjct: 3126 tccttggagtccttggagttg 3106
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>gb|DQ176278.1| Anochetus sp. BLF m2 voucher CASENT0053696-D01 cytochrome oxidase
           subunit 1 (COI) gene, partial cds; mitochondrial
          Length = 650

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 212 ttgataataatgaaattaaagaagg 236
           ||||||||||| |||||||||||||
Sbjct: 295 ttgataataataaaattaaagaagg 271
to top
>gb|DQ176258.1| Anochetus sp. BLF m2 voucher CASENT0053760-D01 cytochrome oxidase
           subunit 1 (COI) gene, partial cds; mitochondrial
          Length = 657

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 212 ttgataataatgaaattaaagaagg 236
           ||||||||||| |||||||||||||
Sbjct: 295 ttgataataataaaattaaagaagg 271
to top
>gb|DQ176256.1| Anochetus sp. BLF m2 voucher CASENT0053776-D01 cytochrome oxidase
           subunit 1 (COI) gene, partial cds; mitochondrial
          Length = 657

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 212 ttgataataatgaaattaaagaagg 236
           ||||||||||| |||||||||||||
Sbjct: 295 ttgataataataaaattaaagaagg 271
to top
>gb|DQ176248.1| Anochetus sp. BLF m1 voucher CASENT0053785-D01 cytochrome oxidase
           subunit 1 (COI) gene, partial cds; mitochondrial
          Length = 657

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 212 ttgataataatgaaattaaagaagg 236
           ||||||||||| |||||||||||||
Sbjct: 295 ttgataataataaaattaaagaagg 271
to top
>gb|DQ176221.1| Anochetus sp. BLF m1 voucher CASENT0053814-D01 cytochrome oxidase
           subunit 1 (COI) gene, partial cds; mitochondrial
          Length = 656

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 212 ttgataataatgaaattaaagaagg 236
           ||||||||||| |||||||||||||
Sbjct: 295 ttgataataataaaattaaagaagg 271
to top
>gb|DQ176193.1| Anochetus sp. BLF m2 voucher CASENT0053870-D01 cytochrome oxidase
           subunit 1 (COI) gene, partial cds; mitochondrial
          Length = 657

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 212 ttgataataatgaaattaaagaagg 236
           ||||||||||| |||||||||||||
Sbjct: 295 ttgataataataaaattaaagaagg 271
to top
>gb|DQ176184.1| Anochetus sp. BLF m1 voucher CASENT0053884-D01 cytochrome oxidase
           subunit 1 (COI) gene, partial cds; mitochondrial
          Length = 657

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 212 ttgataataatgaaattaaagaagg 236
           ||||||||||| |||||||||||||
Sbjct: 295 ttgataataataaaattaaagaagg 271
to top
>gb|DQ176183.1| Anochetus sp. BLF m2 voucher CASENT0053944-D01 cytochrome oxidase
           subunit 1 (COI) gene, partial cds; mitochondrial
          Length = 657

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 212 ttgataataatgaaattaaagaagg 236
           ||||||||||| |||||||||||||
Sbjct: 295 ttgataataataaaattaaagaagg 271
to top
>ref|NM_005121.1| Homo sapiens thyroid hormone receptor associated protein 1 (THRAP1),
            mRNA
          Length = 7389

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 467  tccttggagtccttggagttg 487
            |||||||||||||||||||||
Sbjct: 3126 tccttggagtccttggagttg 3106
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>emb|AL844151.3| Mouse DNA sequence from clone RP23-73O7 on chromosome X, complete
              sequence
          Length = 134513

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 115    attctcacatttcagtgtacacaag 139
              ||||||| |||||||||||||||||
Sbjct: 133000 attctcaaatttcagtgtacacaag 132976
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>emb|AL645857.11| Mouse DNA sequence from clone RP23-167N2 on chromosome X, complete
           sequence
          Length = 137904

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 115 attctcacatttcagtgtacacaag 139
           ||||||| |||||||||||||||||
Sbjct: 487 attctcaaatttcagtgtacacaag 463
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>gb|AY622990.1| Lycopersicon esculentum UDP-glucose:protein transglucosylase-like
           protein SlUPTG1 mRNA, complete cds
          Length = 1398

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 637 ctggaagaaggggatgatgtcctc 660
           |||||||||||||||||| |||||
Sbjct: 910 ctggaagaaggggatgatctcctc 887
to top
>ref|XM_640234.1| Dictyostelium discoideum hypothetical protein (DDB0216958), partial
           mRNA
          Length = 4941

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 213 tgataataatgaaattaaagaagg 236
           ||||||||||||||||| ||||||
Sbjct: 450 tgataataatgaaattatagaagg 473
to top
>ref|XM_635556.1| Dictyostelium discoideum hypothetical protein (DDB0218304), partial
           mRNA
          Length = 2061

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 ataataatgaaattaaagaa 234
           ||||||||||||||||||||
Sbjct: 752 ataataatgaaattaaagaa 771
to top
>ref|XM_515469.1| PREDICTED: Pan troglodytes LOC459225 (LOC459225), mRNA
          Length = 986

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 573 cctgctgcgagagcgagatg 592
           ||||||||||||||||||||
Sbjct: 143 cctgctgcgagagcgagatg 162
to top
>ref|NM_004801.2| Homo sapiens neurexin 1 (NRXN1), transcript variant alpha, mRNA
          Length = 6202

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 573 cctgctgcgagagcgagatg 592
           ||||||||||||||||||||
Sbjct: 335 cctgctgcgagagcgagatg 354
to top
>gb|AF253417.1| Homo sapiens microsomal epoxide hydrolase (EPHX1) gene, complete
           cds
          Length = 33795

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 18  cattgatgggtgactttccggtcc 41
           |||||| |||||||||||||||||
Sbjct: 717 cattgaggggtgactttccggtcc 740
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>ref|NM_174404.2| Bos taurus neurexin 1 (NRXN1), mRNA
          Length = 6349

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 573  cctgctgcgagagcgagatg 592
            ||||||||||||||||||||
Sbjct: 1435 cctgctgcgagagcgagatg 1454
to top
>ref|XM_865667.1| PREDICTED: Bos taurus similar to neurexin 1 isoform alpha precursor
           (LOC614246), partial mRNA
          Length = 913

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 573 cctgctgcgagagcgagatg 592
           ||||||||||||||||||||
Sbjct: 284 cctgctgcgagagcgagatg 303
to top
>gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, complete sequence
          Length = 153145

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   ttgataataatgaaattaaa 231
             ||||||||||||||||||||
Sbjct: 21933 ttgataataatgaaattaaa 21952
to top
>gb|BT012716.1| Lycopersicon esculentum clone 113599F, mRNA sequence
          Length = 1413

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 637 ctggaagaaggggatgatgtcctc 660
           |||||||||||||||||| |||||
Sbjct: 928 ctggaagaaggggatgatctcctc 905
to top
>gb|BC046631.1| Homo sapiens neurexin 1, mRNA (cDNA clone IMAGE:4815048), complete
            cds
          Length = 5169

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 573  cctgctgcgagagcgagatg 592
            ||||||||||||||||||||
Sbjct: 1206 cctgctgcgagagcgagatg 1225
to top
>ref|XM_847010.1| PREDICTED: Canis familiaris similar to neurexin 1 isoform alpha
           precursor, transcript variant 2 (LOC474589), mRNA
          Length = 5663

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 573 cctgctgcgagagcgagatg 592
           ||||||||||||||||||||
Sbjct: 143 cctgctgcgagagcgagatg 162
to top
>ref|XM_859895.1| PREDICTED: Canis familiaris similar to neurexin 1 isoform alpha
           precursor, transcript variant 5 (LOC474589), mRNA
          Length = 5615

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 573 cctgctgcgagagcgagatg 592
           ||||||||||||||||||||
Sbjct: 143 cctgctgcgagagcgagatg 162
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>ref|XM_531818.2| PREDICTED: Canis familiaris similar to neurexin 1 isoform alpha
           precursor, transcript variant 1 (LOC474589), mRNA
          Length = 5504

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 573 cctgctgcgagagcgagatg 592
           ||||||||||||||||||||
Sbjct: 143 cctgctgcgagagcgagatg 162
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>gb|AC121966.2| Mus musculus BAC clone RP24-267N15 from 12, complete sequence
          Length = 163521

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 503   tcgatccaggtgaccatggc 522
             ||||||||||||||||||||
Sbjct: 66303 tcgatccaggtgaccatggc 66322
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>gb|AC142349.1| Pan troglodytes BAC clone RP43-9F6 from 7, complete sequence
          Length = 192143

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 403    aatgcaaaaaaggttctctc 422
              ||||||||||||||||||||
Sbjct: 170353 aatgcaaaaaaggttctctc 170334
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>emb|AL451081.5| Human DNA sequence from clone RP11-302I18 on chromosome 1 Contains a
             thyroid autoantigen 70kDa (Ku antigen) (G22P1) pseudogene,
             a ribosomal protein, large, P0 (RPLP0) pseudogene and a
             novel gene, complete sequence
          Length = 76193

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   aaattaaagaaggggaaaat 243
             ||||||||||||||||||||
Sbjct: 38508 aaattaaagaaggggaaaat 38527
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>emb|AL035468.3|HS424E5 Human DNA sequence from clone RP3-424E5 on chromosome 6q13-14.3,
             complete sequence
          Length = 93805

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    atgtttattcaacaaccttt 113
             ||||||||||||||||||||
Sbjct: 31780 atgtttattcaacaaccttt 31799
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>ref|XM_964572.1| PREDICTED: Tribolium castaneum similar to CG1212-PA, isoform A
            (LOC658163), mRNA
          Length = 2158

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 455  ttggcgtcggcctccttggagtcc 478
            |||||| |||||||||||||||||
Sbjct: 1456 ttggcgacggcctccttggagtcc 1433
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>emb|AJ719696.1| Gallus gallus mRNA for hypothetical protein, clone 5g4
          Length = 1896

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 226  attaaagaaggggaaaatta 245
            ||||||||||||||||||||
Sbjct: 1715 attaaagaaggggaaaatta 1734
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>ref|NM_001006185.1| Gallus gallus DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 (DDX55), mRNA
          Length = 1896

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 226  attaaagaaggggaaaatta 245
            ||||||||||||||||||||
Sbjct: 1715 attaaagaaggggaaaatta 1734
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>dbj|AK124726.1| Homo sapiens cDNA FLJ42736 fis, clone BRAWH2015866, highly  similar
            to Homo sapiens mRNA for neurexin I-alpha protein
          Length = 2543

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 573  cctgctgcgagagcgagatg 592
            ||||||||||||||||||||
Sbjct: 1620 cctgctgcgagagcgagatg 1639
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>gb|AC092354.2| Homo sapiens chromosome 5 clone RP11-307L14, complete sequence
          Length = 123581

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 216   taataatgaaattaaagaaggggaaaat 243
             |||||||| |||| ||||||||||||||
Sbjct: 72119 taataatgtaattgaagaaggggaaaat 72092
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>gb|AC020687.6| Homo sapiens chromosome 15, clone RP11-648K4, complete sequence
          Length = 169571

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 465    cctccttggagtccttggag 484
              ||||||||||||||||||||
Sbjct: 160724 cctccttggagtccttggag 160743
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>gb|AC091986.3| Homo sapiens chromosome 5 clone RP11-68K1, complete sequence
          Length = 160760

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     ttattcaacaaccttttatt 117
              ||||||||||||||||||||
Sbjct: 153926 ttattcaacaaccttttatt 153945
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>gb|AC010267.7| Homo sapiens chromosome 5 clone CTC-472C24, complete sequence
          Length = 186787

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     ttattcaacaaccttttatt 117
              ||||||||||||||||||||
Sbjct: 124172 ttattcaacaaccttttatt 124153
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>gb|AC007682.3| Homo sapiens BAC clone RP11-391D19 from 2, complete sequence
          Length = 189968

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 573    cctgctgcgagagcgagatg 592
              ||||||||||||||||||||
Sbjct: 159072 cctgctgcgagagcgagatg 159053
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>gb|AC115604.2| Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4,
            complete sequence
          Length = 60220

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 213  tgataataatgaaattaaagaagg 236
            ||||||||||||||||| ||||||
Sbjct: 8222 tgataataatgaaattatagaagg 8245
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>gb|AC026431.3|AC026431 Homo sapiens chromosome 5 clone CTD-2222F6, complete sequence
          Length = 143080

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    ttattcaacaaccttttatt 117
             ||||||||||||||||||||
Sbjct: 62766 ttattcaacaaccttttatt 62785
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>ref|XM_220813.3| PREDICTED: Rattus norvegicus thyroid hormone receptor associated
            protein 1 (predicted) (Thrap1_predicted), mRNA
          Length = 9511

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 467  tccttggagtccttggagtt 486
            ||||||||||||||||||||
Sbjct: 4009 tccttggagtccttggagtt 3990
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>gb|AC099066.3| Homo sapiens chromosome 1 clone RP11-145A3, complete sequence
          Length = 149549

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 18     cattgatgggtgactttccggtcc 41
              |||||| |||||||||||||||||
Sbjct: 147418 cattgaggggtgactttccggtcc 147441
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>emb|AL935324.8| Zebrafish DNA sequence from clone CH211-197B6 in linkage group 10,
              complete sequence
          Length = 197730

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 223    gaaattaaagaaggggaaaa 242
              ||||||||||||||||||||
Sbjct: 135260 gaaattaaagaaggggaaaa 135279
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>gb|AC155927.2| Mus musculus BAC clone RP24-133E20 from 12, complete sequence
          Length = 142746

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   accttttattctcacatttc 127
             ||||||||||||||||||||
Sbjct: 38111 accttttattctcacatttc 38130
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>emb|CR855192.10| Zebrafish DNA sequence from clone DKEY-202P3 in linkage group 10,
             complete sequence
          Length = 85127

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   gaaattaaagaaggggaaaa 242
             ||||||||||||||||||||
Sbjct: 75606 gaaattaaagaaggggaaaa 75625
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>emb|AL935208.8| Zebrafish DNA sequence from clone CH211-241N17, complete sequence
          Length = 151406

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   ataataatgaaattaaagaa 234
             ||||||||||||||||||||
Sbjct: 68179 ataataatgaaattaaagaa 68160
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>gb|AC140250.3| Mus musculus BAC clone RP24-288J3 from 1, complete sequence
          Length = 163490

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 479   ttggagttgagcatgtcccaggcc 502
             |||||||||||| |||||||||||
Sbjct: 56795 ttggagttgagcctgtcccaggcc 56818
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>emb|AL627125.8| Mouse DNA sequence from clone RP23-466N19 on chromosome 4, complete
             sequence
          Length = 179068

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   ataataatgaaattaaagaa 234
             ||||||||||||||||||||
Sbjct: 65099 ataataatgaaattaaagaa 65080
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>gb|L14855.1|BOVNEURXIA Bos taurus neurexin I-alpha mRNA, complete cds
          Length = 6349

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 573  cctgctgcgagagcgagatg 592
            ||||||||||||||||||||
Sbjct: 1435 cctgctgcgagagcgagatg 1454
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>dbj|AB035356.1| Homo sapiens mRNA for neurexin I-alpha protein, complete cds
          Length = 6206

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 573 cctgctgcgagagcgagatg 592
           ||||||||||||||||||||
Sbjct: 335 cctgctgcgagagcgagatg 354
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>dbj|AB011150.2| Homo sapiens mRNA for KIAA0578 protein, partial cds
          Length = 8114

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 573 cctgctgcgagagcgagatg 592
           ||||||||||||||||||||
Sbjct: 326 cctgctgcgagagcgagatg 345


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,204,070
Number of Sequences: 3902068
Number of extensions: 5204070
Number of successful extensions: 117357
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117077
Number of HSP's gapped (non-prelim): 275
length of query: 660
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 637
effective length of database: 17,143,297,704
effective search space: 10920280637448
effective search space used: 10920280637448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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