ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1n22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HYEP_HUMAN (P07099) Epoxide hydrolase 1 (EC 3.3.2.3) (Microsomal... 32 0.80
2Y2176_VIBCH (Q9KQ28) Hypothetical UPF0162 protein VC2176 30 5.2
3ARHG7_HUMAN (Q14155) Rho guanine nucleotide exchange factor 7 (P... 29 6.8
4UD12_RAT (P20720) UDP-glucuronosyltransferase 1-2 precursor (EC ... 29 6.8
5TLR4_PIG (Q68Y56) Toll-like receptor 4 precursor (CD284 antigen) 29 8.9
6UD15_RAT (Q64638) UDP-glucuronosyltransferase 1-5 precursor (EC ... 29 8.9

>HYEP_HUMAN (P07099) Epoxide hydrolase 1 (EC 3.3.2.3) (Microsomal epoxide|
           hydrolase) (Epoxide hydratase)
          Length = 455

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 253 EYVAEGWLSREPATXRRCVPTGTSSFD-NLFHWPSKWL 363
           E + +GW++++    +  VPTG S+F   L H P KW+
Sbjct: 376 ENLGQGWMTQKHERMKVYVPTGFSAFPFELLHTPEKWV 413



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>Y2176_VIBCH (Q9KQ28) Hypothetical UPF0162 protein VC2176|
          Length = 270

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +1

Query: 226 NTYQHE*IHEYVAEGWLSREPATXRRCVPTGTSSFDNLFHWPS---KWLAMAEKT*PFER 396
           N +  E + ++  + WL        +  P    S DN    P+   +WLA+ +     E 
Sbjct: 140 NPFNGEIVSQHTLQAWLVGHKGPLAKLKPQHLQSVDN----PTIIGRWLALLKSALLREE 195

Query: 397 KWVESLRCTQGSMAF 441
           ++  +LRCT  ++ F
Sbjct: 196 RYTLALRCTDLALTF 210



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>ARHG7_HUMAN (Q14155) Rho guanine nucleotide exchange factor 7 (PAK-interacting|
           exchange factor beta) (Beta-Pix) (COOL-1) (p85)
          Length = 803

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 168 DEK*SLDWI*REGTVSTIDASDCKDDYDYEWIGNXH 61
           D++ SLD + R  ++S ++ SD  +D DY+ I   H
Sbjct: 748 DDQPSLDSLGRRSSLSRLEPSDLSEDSDYDSIWTAH 783



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>UD12_RAT (P20720) UDP-glucuronosyltransferase 1-2 precursor (EC 2.4.1.17)|
           (UDPGT) (UGT1*0) (UGT1-02) (UGT1.2) (UGT1A2) (Bilirubin
           specific) (B2)
          Length = 533

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 276 VEGASHXTTLCTNGDFIFRQPLPLAQQMAGYGRKNLTFRKEM 401
           VE  SH +     GDF+F  P P+   M   G  N   +K +
Sbjct: 245 VEVLSHASVWLFRGDFVFDYPRPIMPNMVFIGGINCVIKKPL 286



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>TLR4_PIG (Q68Y56) Toll-like receptor 4 precursor (CD284 antigen)|
          Length = 841

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 81  HSHSHPYNQKHQWLRLFPLFISNLKIIFHLSLVYNK*EKKYHNGIEEQQYLP 236
           H+H H +          P + SNL  + HL L  NK E  YH  ++    +P
Sbjct: 159 HNHIHSFK--------LPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLHQVP 202



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>UD15_RAT (Q64638) UDP-glucuronosyltransferase 1-5 precursor (EC 2.4.1.17)|
           (UDPGT) (UGT1*5) (UGT1-05) (UGT1.5) (UGT1A5) (B5)
          Length = 531

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 276 VEGASHXTTLCTNGDFIFRQPLPLAQQMAGYGRKNLTFRKEM 401
           VE  SH +     GDF+F  P P+   M   G  N   +K +
Sbjct: 243 VEVLSHASVWLFRGDFVFDYPRPVMPNMVFIGGINCVIKKPL 284


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,490,753
Number of Sequences: 219361
Number of extensions: 1756767
Number of successful extensions: 3916
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3909
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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