>YN9B_YEAST (P52923) Protein YNR074C|
          Length = 378

 Score = 33.9 bits (76), Expect = 0.39
 Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = -1

Query: 547 LKESLDTKGRVMVEKDLRVKGHD--NIFAIGDITD 449
           + +  D KG + VEK+ RVK  +  N+FAIGD+T+
Sbjct: 252 ISDLCDKKGFIQVEKNFRVKAVEAGNVFAIGDVTN 286

>PGCA_RAT (P07897) Aggrecan core protein precursor (Cartilage-specific|
           proteoglycan core protein) (CSPCP)
          Length = 2124

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 24/86 (27%), Positives = 33/86 (38%)
 Frame = -1

Query: 448 IPEXQTRVPRPEARAAGSEEPEATDQGVASEQARHLQHRVPAGDRLPGKEGRAGAAALPD 269
           +P  +     P A    S+EP A+     SE+       VP+G  LP     +GA   PD
Sbjct: 762 VPAAEEHTESPSA----SQEPSASQVPSTSEEPYTPSLAVPSGTELPSSGDTSGA---PD 814

Query: 268 AHRVHTGDAQIQGPVRRQDEEADGPE 191
                TG     G +    E + G E
Sbjct: 815 LSGDFTGSTDTSGRLDSSGEPSGGSE 840

>IF2_DESDG (Q30WJ0) Translation initiation factor IF-2|
          Length = 984

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = -1

Query: 424 PRPEARAAGSEEPEATDQGVASEQARHLQHRV--PAGDRLPGKEGRAGAAALPDAHRVHT 251
           P PEA++A  E+ EA D G   +QA   +     PA ++ P ++ R   +  P+   V  
Sbjct: 163 PAPEAQSAAPEKVEAHDAGAPVQQAETTESAPAEPAAEKAPAEKRRYEVSMEPEKDSVQA 222

Query: 250 GDAQIQGPVRRQDEEADG 197
                       D EADG
Sbjct: 223 ------------DTEADG 228

>PACC_EMENI (Q00202) pH-response transcription factor pacC/RIM101|
          Length = 678

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = +3

Query: 192 SGPSASSSCRRTGPWI*ASP------VCTR*ASGRAAAPALPSFPGRRSPAGTRCCRWRA 353
           S P+A+     T P + A+       V +  A+G AA+P  P+    R PA    C W+ 
Sbjct: 24  SQPAAAQVTTVTSPSVTATAAAATAAVASPQANGNAASPVAPASSTSR-PAEELTCMWQG 82

Query: 354 CSEATP 371
           CSE  P
Sbjct: 83  CSEKLP 88

>NPBL_MOUSE (Q6KCD5) Nipped-B-like protein (Delangin homolog) (SCC2 homolog)|
          Length = 2798

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
 Frame = -1

Query: 436  QTRVPRPEARAAGSEEPEATDQGVASEQARHLQHRVPAGDRLPGKEGRAGAAALPDAHRV 257
            Q+RV RPE   + S    +T    +  +    +HR  +GD      G     + PD+ RV
Sbjct: 835  QSRVRRPETLRSSSRNDHSTKSDGSKTEKLERKHRHESGDSRDRPSGE--QKSRPDSPRV 892

Query: 256  HTGDAQ-----IQGPVRRQDEEADG 197
              GD        + P  + D+  +G
Sbjct: 893  KQGDTNKSRPGFKSPNSKDDKRTEG 917

>COBA2_MOUSE (Q64739) Collagen alpha-2(XI) chain precursor|
          Length = 1736

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 222 RTGPWI*ASPVCTR*ASGRAAAPALPSFPGRRSPAGT 332
           RTGP     P       G+   P LP +PGR+ P G+
Sbjct: 776 RTGPTGDPGPTGLMGEKGKLGVPGLPGYPGRQGPKGS 812

>SQRD_MOUSE (Q9R112) Sulfide:quinone oxidoreductase, mitochondrial precursor|
           (EC 1.-.-.-)
          Length = 450

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
 Frame = -1

Query: 550 ILKES--LDTKGRVMVEKD-LRVKGHDNIFAIGDITDIPEXQT 431
           +LK S   D+ G V V+K+ L+ K + N+F IGD T++P  +T
Sbjct: 303 VLKRSPVADSAGWVDVDKETLQHKKYPNVFGIGDCTNLPTSKT 345

>TRXB_MYCLE (P46843) Bifunctional thioredoxin reductase/thioredoxin [Includes:|
           Thioredoxin reductase (EC 1.8.1.9) (TRXR); Thioredoxin]
          Length = 458

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 25/75 (33%), Positives = 32/75 (42%)
 Frame = -1

Query: 598 FVCIGKPLSSSWLHDTILKESLDTKGRVMVEKDLRVKGHDNIFAIGDITDIPEXQTRVPR 419
           FV IG    SS + D +    +D  G V+V+        D +FA GD+ D      R  R
Sbjct: 242 FVAIGHEPRSSLVSDVV---DIDPDGYVLVKGRTTSTSMDGVFAAGDLVD------RTYR 292

Query: 418 PEARAAGSEEPEATD 374
               AAGS    A D
Sbjct: 293 QAITAAGSGCAAAID 307

>PGCA_PIG (Q29011) Aggrecan core protein (Cartilage-specific proteoglycan|
           core protein) (CSPCP) (Fragments)
          Length = 537

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 424 PRPEARAAGSEEPEATDQGVASEQARHLQHRVPAGDRLPGKEGRAGA 284
           P P      SE+P A+++   SEQ   L   VP+   LPG    +GA
Sbjct: 488 PFPSEEPFPSEKPSASEEPFPSEQPSTLSAPVPSRTELPGSGEVSGA 534

>APBA1_RAT (O35430) Amyloid beta A4 precursor protein-binding family A member|
           1 (Neuron-specific X11 protein) (Neuronal
           Munc18-1-interacting protein 1) (Mint-1) (Adapter
           protein X11alpha)
          Length = 839

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
 Frame = -1

Query: 400 GSEEPEATDQGVASEQARH----LQHRVPAGDRLPGKEGRAGAAALPDAHRVHTGDAQIQ 233
           GS E E  D+    E        L+H     ++ P     AG A  P+ HR H       
Sbjct: 6   GSAEVEVADEAPGGEVNESVEADLEHPEVEEEQQPSPPPPAGHA--PEDHRAHPAPPPPP 63

Query: 232 GPVRRQDEEADGPECLSRPISRQN 161
            P   Q+EE +  ECL+R  S ++
Sbjct: 64  PP---QEEEEERGECLARSASTES 84

>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 328 PAGDRLPGKEGRAGAAALPDAHRVHTGDAQIQGP 227
           P    LPG +GRAG    P  +R  TG A I+GP
Sbjct: 408 PGSRGLPGADGRAGVMG-PPGNRGSTGPAGIRGP 440

>ZO2_CANFA (Q95168) Tight junction protein ZO-2 (Zonula occludens 2 protein)|
           (Zona occludens 2 protein) (Tight junction protein 2)
          Length = 1174

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -1

Query: 430 RVPRPEARAAGSEEPEATDQGVASEQARHLQHRVPAGDRLPGKEGRAGAAALPDAHR 260
           R   PEA      +P+A   G  S    HL+ R P+    P   GR   A  PD+ R
Sbjct: 236 RTYSPEAEYGRRTQPDARHAGSRSRSREHLRSRSPS----PELRGRPDHAGQPDSDR 288

>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 15/83 (18%), Positives = 38/83 (45%)
 Frame = -1

Query: 460 DITDIPEXQTRVPRPEARAAGSEEPEATDQGVASEQARHLQHRVPAGDRLPGKEGRAGAA 281
           +++D+   ++++ R E  +   +E ++ D+ V  E+    +         P K+G     
Sbjct: 207 ELSDMDYLKSKMVRAEVSSEDEDEEDSEDEAVNCEEGSE-EEEEEGSPASPAKQGGVSRG 265

Query: 280 ALPDAHRVHTGDAQIQGPVRRQD 212
           A+P   R      +++ PV +++
Sbjct: 266 AVPGVLRPQEAAGKVEKPVSQKE 288

>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor|
          Length = 1736

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 222 RTGPWI*ASPVCTR*ASGRAAAPALPSFPGRRSPAGT 332
           RTGP     P       G+   P LP +PGR+ P G+
Sbjct: 776 RTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGS 812

>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 328 PAGDRLPGKEGRAGAAALPDAHRVHTGDAQIQGP 227
           P    LPG +GRAG    P  +R  TG A ++GP
Sbjct: 408 PGSRGLPGADGRAGVMG-PPGNRGSTGPAGVRGP 440

>YKGC_ECOLI (P77212) Probable pyridine nucleotide-disulfide oxidoreductase ykgC|
          Length = 441

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = -1

Query: 616 ITADCHFVCIGKPLSSSWLHDTILKESLDTKGRVMVEKDLRVKGHDNIFAIGDIT 452
           +  D   +  G+  +++ LH      +++ +G ++V+K L     DNI+A+GD+T
Sbjct: 241 LAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKRLHTTA-DNIWAMGDVT 294

>DPOE_EMENI (O93845) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)|
            (DNA polymerase II subunit A)
          Length = 2207

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = -1

Query: 334  RVPAGDRLPGKEGRAGAAALPDAHRVHTGDAQIQGPVRRQDEEADGPECLS 182
            ++P G   PG+E    +AAL D         QI G +RRQ EE   PE  S
Sbjct: 1947 QIPIGQPEPGQENEELSAALSDRFSKPL-KKQISGLIRRQREELLHPELAS 1996

>PRP5_USTMA (Q4PFD9) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC|
           3.6.1.-)
          Length = 1156

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -1

Query: 286 AAALPDAHRVHTGDAQIQGPVRRQDEEADGPECLSRPI 173
           AA  PD  R H   A  QG  RR DE A  P   + P+
Sbjct: 95  AAPSPDGRRFHVEGAPRQGGRRRWDEGAPTPPTAAAPV 132

>PRAX_HUMAN (Q9BXM0) Periaxin|
          Length = 1461

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
 Frame = -1

Query: 409  RAAGSEEPEATDQGVASEQARHLQHRVPAGDRLPGKEGRA-------GAAALPDAHRVHT 251
            R   S+    T +G  S +    +    +G+   G+ GR        G AA   A R   
Sbjct: 1335 RVGFSQSEMVTGEGSPSPEEEEEEEEEGSGEGASGRRGRVRVRLPRVGLAAPSKASRGQE 1394

Query: 250  GDAQIQGPVRRQDEEADGPECLSRPISR 167
            GDA  + PVR +  +   P     P +R
Sbjct: 1395 GDAAPKSPVREKSPKFRFPRVSLSPKAR 1422

>AHPF_PSEPU (P0A156) Alkyl hydroperoxide reductase subunit F (EC 1.6.4.-)|
          Length = 520

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -1

Query: 598 FVCIGKPLSSSWLHDTILKESLDTKGRVMVEKDLRVKGHDNI---FAIGDITDIPEXQ 434
           FV IG   ++ WL  T+    L  +G ++V+     KG  +I   FA GD+T +P  Q
Sbjct: 444 FVQIGLLPNTDWLKGTV---ELSPRGEIIVD----AKGQTSIPGVFAAGDVTTVPYKQ 494

>AHPF_PSEPK (P0A155) Alkyl hydroperoxide reductase subunit F (EC 1.6.4.-)|
          Length = 520

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -1

Query: 598 FVCIGKPLSSSWLHDTILKESLDTKGRVMVEKDLRVKGHDNI---FAIGDITDIPEXQ 434
           FV IG   ++ WL  T+    L  +G ++V+     KG  +I   FA GD+T +P  Q
Sbjct: 444 FVQIGLLPNTDWLKGTV---ELSPRGEIIVD----AKGQTSIPGVFAAGDVTTVPYKQ 494

>PGCA_MOUSE (Q61282) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP)
          Length = 2132

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 24/86 (27%), Positives = 33/86 (38%)
 Frame = -1

Query: 448  IPEXQTRVPRPEARAAGSEEPEATDQGVASEQARHLQHRVPAGDRLPGKEGRAGAAALPD 269
            +P  +     P A    SEEP A+     SE+       VP+   LPG    +GA   PD
Sbjct: 766  LPAAEEHTESPSA----SEEPSASAVPSTSEEPYTSSFAVPSMTELPGSGEASGA---PD 818

Query: 268  AHRVHTGDAQIQGPVRRQDEEADGPE 191
                 TG     G +    + + G E
Sbjct: 819  LSGDFTGSGDASGRLDSSGQPSGGIE 844

>GRB14_HUMAN (Q14449) Growth factor receptor-bound protein 14 (GRB14 adapter|
           protein)
          Length = 540

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 443 RNICDVTDCKNVIVTLHSQVLLHHYSSLGVQRFLQD 550
           R++C +   KN  +  HS  L  H   +GV+R ++D
Sbjct: 131 RDVCQLLILKNHYIDDHSWTLFEHLPHIGVERTIED 166

>US02_HHV2H (P13292) Protein US2|
          Length = 290

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = +1

Query: 172 RWAGSSIQAHLLPRLADEQVLGFEHPRYAPGERQVGQLRQPFLPS--QGDDRQREPG--- 336
           RW  S +  H  PR A  +     HP   P    +G+   P  PS   GDD  + PG   
Sbjct: 212 RWLRSLVAPHNKPRPASSRPHPATHPTQRPCFTCMGRPEIPDEPSWQTGDDDPQNPGPPL 271

Query: 337 AVGGE 351
           AVG E
Sbjct: 272 AVGDE 276

>SENP3_MOUSE (Q9EP97) Sentrin-specific protease 3 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP3) (SUMO-1-specific
           protease 3) (Smt3-specific isopeptidase 1) (Smt3ip1)
          Length = 568

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = -1

Query: 463 GDITDIPEXQTRVPRPEARAAGSEEPEATDQGVASEQARHLQHRVPAGDRLPGKEGRAGA 284
           G  T +P  +   PRP   A+ SEE E  ++    E A           RLP + G+ GA
Sbjct: 51  GSGTTVPTRRLPAPRPSFDASASEEEEEEEEEDEEEVAAW---------RLPPRWGQLGA 101

Query: 283 A----ALPDAHR 260
           +    AL  +HR
Sbjct: 102 SQRSRALRPSHR 113

>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor|
          Length = 1804

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +3

Query: 171 EMGRLKHSGPSASSSCRRTGPWI*ASPVCTR*ASGRAAAPALPSFPGRRSPAGT 332
           ++G     GP       R GP     P       G+   P LP +PGR+ P G+
Sbjct: 801 QVGPRGEDGPEGPKG--RAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGS 852

>COBA1_BOVIN (Q28083) Collagen alpha-1(XI) chain precursor (Fragment)|
          Length = 911

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +3

Query: 171 EMGRLKHSGPSASSSCRRTGPWI*ASPVCTR*ASGRAAAPALPSFPGRRSPAGT 332
           ++G     GP       R GP     P       G+   P LP +PGR+ P G+
Sbjct: 570 QVGPRGEDGPEGPKG--RAGPTGDPGPPGQAGEKGKLGVPGLPGYPGRQGPKGS 621

>PGCA_CANFA (Q28343) Aggrecan core protein precursor (Cartilage-specific|
           proteoglycan core protein) (CSPCP)
          Length = 2333

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = -1

Query: 442 EXQTRVPRPEARAAGSEEPEATDQGVASEQARHLQHRVPAGDRLPGKEGRAGAAALPDAH 263
           E  T  P      + SEEP  +++    E+   L    P+G  LPG      A+ +P+  
Sbjct: 778 EESTEGPSGTEVPSVSEEPSPSEEPFPWEELSTLSPPGPSGTELPGS---GEASGVPEVS 834

Query: 262 RVHTGDAQIQG 230
              TG  ++ G
Sbjct: 835 GDFTGSGEVSG 845

>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor|
          Length = 1806

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +3

Query: 171 EMGRLKHSGPSASSSCRRTGPWI*ASPVCTR*ASGRAAAPALPSFPGRRSPAGT 332
           ++G     GP       R GP     P       G+   P LP +PGR+ P G+
Sbjct: 803 QIGPRGEDGPEGPKG--RAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGS 854

>SQRD_HUMAN (Q9Y6N5) Sulfide:quinone oxidoreductase, mitochondrial precursor|
           (EC 1.-.-.-)
          Length = 450

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = -1

Query: 550 ILKES--LDTKGRVMVEKD-LRVKGHDNIFAIGDITDIPEXQT 431
           +LK S   D  G V V+K+ L+ + + N+F IGD T++P  +T
Sbjct: 303 VLKTSPVADAAGWVDVDKETLQHRRYPNVFGIGDCTNLPTSKT 345

>AXN2_RAT (O70240) Axin-2 (Axis inhibition protein 2) (Conductin) (Axin-like|
           protein) (Axil)
          Length = 838

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 25/100 (25%), Positives = 39/100 (39%)
 Frame = +1

Query: 37  HVHSHFC*NVHHHSRHITNNYSHREQRMTIQHICAASQRFICFAWRWAGSSIQAHLLPRL 216
           HVH H+   +HHH+   T      E    ++ +C     + C+      S  ++H  P  
Sbjct: 509 HVHHHY---IHHHAVPKTKEEIEAEATQRVRCLCPGGTDYYCY------SKCKSHSKP-- 557

Query: 217 ADEQVLGFEHPRYAPGERQVGQLRQPFLPSQGDDRQREPG 336
                     P   PGE+  G  R   LP + + +  EPG
Sbjct: 558 ----------PEPLPGEQFCGS-RGGTLPKR-NTKGTEPG 585


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,917,007
Number of Sequences: 219361
Number of extensions: 2108977
Number of successful extensions: 6918
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 6256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6875
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)