Clone Information

BLAST Search Result

Clone Name	rbags33n02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AJ491323.1\|OSA491323 Oryza sativa (japonica cultivar-group) ...	307	2e-80
2	dbj\|AK119461.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	307	2e-80
3	dbj\|AK067619.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	258	2e-65
4	emb\|AM238660.1\| Zea mays mRNA for putative beta-glycosidase (sfr...	216	6e-53
5	gb\|AC135190.2\| Oryza sativa (japonica cultivar-group) chromosome...	145	2e-31
6	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	145	2e-31
7	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	145	2e-31
8	gb\|AY110358.1\| Zea mays CL3939_1 mRNA sequence	141	3e-30
9	gb\|AC097175.2\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.1
10	gb\|AC018897.4\|AC018897 Homo sapiens BAC clone RP11-575J11 from 1...	42	2.1
11	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
12	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
13	gb\|AY157712.1\| Oryzias latipes putative zinc finger transcriptio...	42	2.1
14	dbj\|AP004999.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
15	dbj\|AP004086.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
16	gb\|AC133510.3\| Mus musculus BAC clone RP23-409B11 from 8, comple...	42	2.1
17	emb\|AJ311316.1\|HCO311316 Haemonchus contortus mRNA for membrane ...	42	2.1
18	gb\|AC161586.5\| Mus musculus BAC clone RP24-457J18 from chromosom...	40	8.3
19	gb\|AC121809.3\| Mus musculus BAC clone RP23-451B23 from chromosom...	40	8.3
20	gb\|AC102849.5\| Mus musculus, clone RP24-423P7, complete sequence	40	8.3
21	emb\|AL357559.16\| Human DNA sequence from clone RP11-393M18 on ch...	40	8.3
22	emb\|AL136116.11\| Human DNA sequence from clone RP1-95L4 on chrom...	40	8.3
23	gb\|AC105600.5\| Rattus norvegicus 4 BAC CH230-209E1 (Children's H...	40	8.3
24	emb\|AL627263.6\| Zebrafish DNA sequence from clone RP71-1L9 in li...	40	8.3
25	emb\|CR925699.6\| Zebrafish DNA sequence from clone RP71-18J1 in l...	40	8.3
26	emb\|BX323579.20\| Zebrafish DNA sequence from clone DKEYP-79E11 i...	40	8.3
27	gb\|AC110989.3\| Homo sapiens 3q BAC RP11-15M16 (Roswell Park Canc...	40	8.3
28	gb\|AC159236.2\| Mus musculus BAC clone RP24-447C11 from chromosom...	40	8.3
29	emb\|BX890619.6\| Zebrafish DNA sequence from clone CH211-288M1, c...	40	8.3
30	gb\|AC024023.4\| Homo sapiens BAC clone RP11-83C7 from 4, complete...	40	8.3
31	gb\|AC153641.3\| Mus musculus 6 BAC RP23-5F24 (Roswell Park Cancer...	40	8.3
32	gb\|AF011889.1\|AF011889 Human Xq28 cosmids U126G1, U142F2, U69B6,...	40	8.3
33	emb\|AL713978.9\| Mouse DNA sequence from clone RP23-159H8 on chro...	40	8.3
34	gb\|AC154742.2\| Mus musculus BAC clone RP24-392F16 from 13, compl...	40	8.3
35	emb\|CR383662.9\| Zebrafish DNA sequence from clone DKEY-207J16 in...	40	8.3
36	emb\|CT574592.2\| Pan troglodytes chromosome X clone PTB-082B15 ma...	40	8.3
37	gb\|AC131028.13\| Mus musculus chromosome 3, clone RP23-293M23, co...	40	8.3
38	gb\|AC157955.2\| Gallus gallus BAC clone TAM31-4B17 from chromosom...	40	8.3
39	gb\|AC158368.2\| Gallus gallus BAC clone CH261-77E11 from chromoso...	40	8.3
40	gb\|AC171684.1\| Mus musculus BAC clone RP23-69D21 from chromosome...	40	8.3
41	gb\|AC153640.6\| Mus musculus 6 BAC RP23-230A2 (Roswell Park Cance...	40	8.3
42	emb\|AL929244.8\| Mouse DNA sequence from clone RP23-456L5 on chro...	40	8.3

>emb|AJ491323.1|OSA491323 Oryza sativa (japonica cultivar-group) mRNA for putative
            beta-glycosidase (sfr2 gene)
          Length = 1944

 Score =  307 bits (155), Expect = 2e-80
 Identities = 301/349 (86%), Gaps = 3/349 (0%)
 Strand = Plus / Minus

                                                                        
Query: 268  aatagaataagaaatcgcatcgtcctcaatgtagtgaatcttctt---gcgtggaaatgg 324
            |||||||||||||||  |||| || || |||||||||||||||||   ||||| ||||||
Sbjct: 1938 aatagaataagaaataacatcatcttctatgtagtgaatcttcttttggcgtgaaaatgg 1879

                                                                        
Query: 325  tcgcataatgcatcttataaagcgactcaaaggatcctgcaagccttccatttcatagtg 384
            |   | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 1878 tgcaaaaatgcatcttataaagcaactcaaaggatcctgcaagccttccattttatagtg 1819

                                                                        
Query: 385  gccaaatcgccagtcccgcaatacaaaagttcgctcaataggccgatctagaccccctgc 444
             ||||||| ||| ||||||||||  || |  | || |||||||||||||||||| |||||
Sbjct: 1818 accaaatctccaatcccgcaatatgaagggcctctgaataggccgatctagaccacctgc 1759

                                                                        
Query: 445  atacatacgaccatgtttatctacttccctgtaaaatgggcgtgttttcttctgaatcgc 504
            |||||| |||||||| ||||| ||| ||||| ||||||| ||||||||||| ||||  ||
Sbjct: 1758 atacatccgaccatgcttatccactgccctgaaaaatggacgtgttttcttttgaactgc 1699

                                                                        
Query: 505  agctttttgcagttccctccaagcagatgttctgtcatgtctcgtaatttttccagttgt 564
            ||||| |||||| ||||||||||||||  ||||||| ||||| |||||||||||||||||
Sbjct: 1698 agcttgttgcagctccctccaagcagacattctgtcctgtcttgtaatttttccagttgt 1639

                                                             
Query: 565  gacaaccttggagaacaaatagtacgaagggcgaggttcccgtgctagg 613
             |||||| ||||||| ||| |||| ||||| ||||||| ||||||||||
Sbjct: 1638 aacaaccctggagaataaaaagtatgaaggccgaggtttccgtgctagg 1590

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>dbj|AK119461.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-E10, full
            insert sequence
          Length = 3007

 Score =  307 bits (155), Expect = 2e-80
 Identities = 301/349 (86%), Gaps = 3/349 (0%)
 Strand = Plus / Minus

                                                                        
Query: 268  aatagaataagaaatcgcatcgtcctcaatgtagtgaatcttctt---gcgtggaaatgg 324
            |||||||||||||||  |||| || || |||||||||||||||||   ||||| ||||||
Sbjct: 2013 aatagaataagaaataacatcatcttctatgtagtgaatcttcttttggcgtgaaaatgg 1954

                                                                        
Query: 325  tcgcataatgcatcttataaagcgactcaaaggatcctgcaagccttccatttcatagtg 384
            |   | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 1953 tgcaaaaatgcatcttataaagcaactcaaaggatcctgcaagccttccattttatagtg 1894

                                                                        
Query: 385  gccaaatcgccagtcccgcaatacaaaagttcgctcaataggccgatctagaccccctgc 444
             ||||||| ||| ||||||||||  || |  | || |||||||||||||||||| |||||
Sbjct: 1893 accaaatctccaatcccgcaatatgaagggcctctgaataggccgatctagaccacctgc 1834

                                                                        
Query: 445  atacatacgaccatgtttatctacttccctgtaaaatgggcgtgttttcttctgaatcgc 504
            |||||| |||||||| ||||| ||| ||||| ||||||| ||||||||||| ||||  ||
Sbjct: 1833 atacatccgaccatgcttatccactgccctgaaaaatggacgtgttttcttttgaactgc 1774

                                                                        
Query: 505  agctttttgcagttccctccaagcagatgttctgtcatgtctcgtaatttttccagttgt 564
            ||||| |||||| ||||||||||||||  ||||||| ||||| |||||||||||||||||
Sbjct: 1773 agcttgttgcagctccctccaagcagacattctgtcctgtcttgtaatttttccagttgt 1714

                                                             
Query: 565  gacaaccttggagaacaaatagtacgaagggcgaggttcccgtgctagg 613
             |||||| ||||||| ||| |||| ||||| ||||||| ||||||||||
Sbjct: 1713 aacaaccctggagaataaaaagtatgaaggccgaggtttccgtgctagg 1665

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>dbj|AK067619.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110O12, full
            insert sequence
          Length = 2820

 Score =  258 bits (130), Expect = 2e-65
 Identities = 265/308 (86%), Gaps = 4/308 (1%)
 Strand = Plus / Minus

                                                                        
Query: 268  aatagaataagaaatcgcatcgtcctcaatgtagtgaatcttctt---gcgtggaaatgg 324
            |||||||||||||||  |||| || || |||||||||||||||||   ||||| ||||||
Sbjct: 2423 aatagaataagaaataacatcatcttctatgtagtgaatcttcttttggcgtgaaaatgg 2364

                                                                        
Query: 325  tcgcataatgcatcttataaagcgactcaaaggatcctgcaagccttccatttcatagtg 384
            |   | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 2363 tgcaaaaatgcatcttataaagcaactcaaaggatcctgcaagccttccattttatagtg 2304

                                                                        
Query: 385  gccaaatcgccagtcccgcaatacaaaagttcgctcaataggccgatctagaccccctgc 444
             ||||||| ||| ||||||||||  || |  | || |||||||||||||||||| |||||
Sbjct: 2303 accaaatctccaatcccgcaatatgaagggcctctgaataggccgatctagaccacctgc 2244

                                                                        
Query: 445  atacatacgaccatgtttatctacttccctgtaaaatgggcgtgttttcttctgaatcgc 504
            |||||| |||||||| ||||| ||| ||||| ||||||| ||||||||||| ||||  ||
Sbjct: 2243 atacatccgaccatgcttatccactgccctgaaaaatggacgtgttttcttttgaactgc 2184

                                                                        
Query: 505  agctttttgcagttccctccaagcagatgttctgtcatgtctcgtaatttttccagttgt 564
            ||| | |||||| ||||||||||||||  ||||||| ||||| |||||||||||||||||
Sbjct: 2183 agc-tgttgcagctccctccaagcagacattctgtcctgtcttgtaatttttccagttgt 2125

                    
Query: 565  gacaacct 572
             |||||||
Sbjct: 2124 aacaacct 2117

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>emb|AM238660.1| Zea mays mRNA for putative beta-glycosidase (sfr2 gene), from leaf
            tissue
          Length = 1977

 Score =  216 bits (109), Expect = 6e-53
 Identities = 241/285 (84%)
 Strand = Plus / Minus

                                                                        
Query: 329  ataatgcatcttataaagcgactcaaaggatcctgcaagccttccatttcatagtggcca 388
            |||||| || |||||||||| || |||||||||||||| |||||||||||||| || |||
Sbjct: 1901 ataatggatgttataaagcggctgaaaggatcctgcaaaccttccatttcataatgacca 1842

                                                                        
Query: 389  aatcgccagtcccgcaatacaaaagttcgctcaataggccgatctagaccccctgcatac 448
            |||||||| ||||||| ||  || | || ||  ||||||||||| |||||||||||||||
Sbjct: 1841 aatcgccaatcccgcagtatgaatgatctctggataggccgatccagaccccctgcatac 1782

                                                                        
Query: 449  atacgaccatgtttatctacttccctgtaaaatgggcgtgttttcttctgaatcgcagct 508
            || || ||||||||||||||  ||||  |||| ||||||||||||||||||| ||| || 
Sbjct: 1781 atccggccatgtttatctaccgccctaaaaaacgggcgtgttttcttctgaaacgctgcc 1722

                                                                        
Query: 509  ttttgcagttccctccaagcagatgttctgtcatgtctcgtaatttttccagttgtgaca 568
            | |||||| |||||||||||||     ||||||||||| || ||||| |||||||| |||
Sbjct: 1721 tgttgcagctccctccaagcagccaacctgtcatgtcttgtgattttcccagttgtaaca 1662

                                                         
Query: 569  accttggagaacaaatagtacgaagggcgaggttcccgtgctagg 613
            | ||| ||||||||||||||||| || | ||||| ||||||||||
Sbjct: 1661 atcttagagaacaaatagtacgagggcctaggtttccgtgctagg 1617



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 259  tcaagaagaaatagaataagaaatcgcatcgtcctcaatgtagtgaatcttctt 312
            |||| |||||| ||||||||||||  | || |||||||||||  ||||||||||
Sbjct: 1977 tcaacaagaaagagaataagaaatatcctcatcctcaatgtaacgaatcttctt 1924

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>gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0064H09, complete sequence
          Length = 146742

 Score =  145 bits (73), Expect = 2e-31
 Identities = 153/179 (85%), Gaps = 3/179 (1%)
 Strand = Plus / Plus

                                                                         
Query: 268   aatagaataagaaatcgcatcgtcctcaatgtagtgaatcttctt---gcgtggaaatgg 324
             |||||||||||||||  |||| || || |||||||||||||||||   ||||| ||||||
Sbjct: 79107 aatagaataagaaataacatcatcttctatgtagtgaatcttcttttggcgtgaaaatgg 79166

                                                                         
Query: 325   tcgcataatgcatcttataaagcgactcaaaggatcctgcaagccttccatttcatagtg 384
             |   | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 79167 tgcaaaaatgcatcttataaagcaactcaaaggatcctgcaagccttccattttatagtg 79226

                                                                        
Query: 385   gccaaatcgccagtcccgcaatacaaaagttcgctcaataggccgatctagaccccctg 443
              ||||||| ||| ||||||||||  || |  | || |||||||||||||||||| ||||
Sbjct: 79227 accaaatctccaatcccgcaatatgaagggcctctgaataggccgatctagaccacctg 79285



 Score =  137 bits (69), Expect = 5e-29
 Identities = 117/133 (87%)
 Strand = Plus / Plus

                                                                         
Query: 440   cctgcatacatacgaccatgtttatctacttccctgtaaaatgggcgtgttttcttctga 499
             ||||||||||| |||||||| ||||| ||| ||||| ||||||| ||||||||||| |||
Sbjct: 79637 cctgcatacatccgaccatgcttatccactgccctgaaaaatggacgtgttttcttttga 79696

                                                                         
Query: 500   atcgcagctttttgcagttccctccaagcagatgttctgtcatgtctcgtaatttttcca 559
             |  ||||||| |||||| ||||||||||||||  ||||||| ||||| ||||||||||||
Sbjct: 79697 actgcagcttgttgcagctccctccaagcagacattctgtcctgtcttgtaatttttcca 79756

                          
Query: 560   gttgtgacaacct 572
             ||||| |||||||
Sbjct: 79757 gttgtaacaacct 79769

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  145 bits (73), Expect = 2e-31
 Identities = 153/179 (85%), Gaps = 3/179 (1%)
 Strand = Plus / Plus

                                                                            
Query: 268      aatagaataagaaatcgcatcgtcctcaatgtagtgaatcttctt---gcgtggaaatgg 324
                |||||||||||||||  |||| || || |||||||||||||||||   ||||| ||||||
Sbjct: 26774477 aatagaataagaaataacatcatcttctatgtagtgaatcttcttttggcgtgaaaatgg 26774536

                                                                            
Query: 325      tcgcataatgcatcttataaagcgactcaaaggatcctgcaagccttccatttcatagtg 384
                |   | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 26774537 tgcaaaaatgcatcttataaagcaactcaaaggatcctgcaagccttccattttatagtg 26774596

                                                                           
Query: 385      gccaaatcgccagtcccgcaatacaaaagttcgctcaataggccgatctagaccccctg 443
                 ||||||| ||| ||||||||||  || |  | || |||||||||||||||||| ||||
Sbjct: 26774597 accaaatctccaatcccgcaatatgaagggcctctgaataggccgatctagaccacctg 26774655



 Score =  137 bits (69), Expect = 5e-29
 Identities = 117/133 (87%)
 Strand = Plus / Plus

                                                                            
Query: 440      cctgcatacatacgaccatgtttatctacttccctgtaaaatgggcgtgttttcttctga 499
                ||||||||||| |||||||| ||||| ||| ||||| ||||||| ||||||||||| |||
Sbjct: 26775007 cctgcatacatccgaccatgcttatccactgccctgaaaaatggacgtgttttcttttga 26775066

                                                                            
Query: 500      atcgcagctttttgcagttccctccaagcagatgttctgtcatgtctcgtaatttttcca 559
                |  ||||||| |||||| ||||||||||||||  ||||||| ||||| ||||||||||||
Sbjct: 26775067 actgcagcttgttgcagctccctccaagcagacattctgtcctgtcttgtaatttttcca 26775126

                             
Query: 560      gttgtgacaacct 572
                ||||| |||||||
Sbjct: 26775127 gttgtaacaacct 26775139

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  145 bits (73), Expect = 2e-31
 Identities = 153/179 (85%), Gaps = 3/179 (1%)
 Strand = Plus / Plus

                                                                            
Query: 268      aatagaataagaaatcgcatcgtcctcaatgtagtgaatcttctt---gcgtggaaatgg 324
                |||||||||||||||  |||| || || |||||||||||||||||   ||||| ||||||
Sbjct: 27101712 aatagaataagaaataacatcatcttctatgtagtgaatcttcttttggcgtgaaaatgg 27101771

                                                                            
Query: 325      tcgcataatgcatcttataaagcgactcaaaggatcctgcaagccttccatttcatagtg 384
                |   | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 27101772 tgcaaaaatgcatcttataaagcaactcaaaggatcctgcaagccttccattttatagtg 27101831

                                                                           
Query: 385      gccaaatcgccagtcccgcaatacaaaagttcgctcaataggccgatctagaccccctg 443
                 ||||||| ||| ||||||||||  || |  | || |||||||||||||||||| ||||
Sbjct: 27101832 accaaatctccaatcccgcaatatgaagggcctctgaataggccgatctagaccacctg 27101890



 Score =  137 bits (69), Expect = 5e-29
 Identities = 117/133 (87%)
 Strand = Plus / Plus

                                                                            
Query: 440      cctgcatacatacgaccatgtttatctacttccctgtaaaatgggcgtgttttcttctga 499
                ||||||||||| |||||||| ||||| ||| ||||| ||||||| ||||||||||| |||
Sbjct: 27102242 cctgcatacatccgaccatgcttatccactgccctgaaaaatggacgtgttttcttttga 27102301

                                                                            
Query: 500      atcgcagctttttgcagttccctccaagcagatgttctgtcatgtctcgtaatttttcca 559
                |  ||||||| |||||| ||||||||||||||  ||||||| ||||| ||||||||||||
Sbjct: 27102302 actgcagcttgttgcagctccctccaagcagacattctgtcctgtcttgtaatttttcca 27102361

                             
Query: 560      gttgtgacaacct 572
                ||||| |||||||
Sbjct: 27102362 gttgtaacaacct 27102374

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>gb|AY110358.1| Zea mays CL3939_1 mRNA sequence
          Length = 1304

 Score =  141 bits (71), Expect = 3e-30
 Identities = 165/200 (82%)
 Strand = Plus / Plus

                                                                       
Query: 329 ataatgcatcttataaagcgactcaaaggatcctgcaagccttccatttcatagtggcca 388
           |||||| || |||||||||| || ||||||||||||||||||||||||||||| || |||
Sbjct: 254 ataatggatgttataaagcggctgaaaggatcctgcaagccttccatttcataatgacca 313

                                                                       
Query: 389 aatcgccagtcccgcaatacaaaagttcgctcaataggccgatctagaccccctgcatac 448
           |||||||| ||||||||||  || | || ||  ||||||||||| |||     |||||||
Sbjct: 314 aatcgccaatcccgcaatatgaatgatctctggataggccgatccagannnnntgcatac 373

                                                                       
Query: 449 atacgaccatgtttatctacttccctgtaaaatgggcgtgttttcttctgaatcgcagct 508
           || || ||||||||||||||| ||||       ||||||||||||||||||| ||| || 
Sbjct: 374 atccggccatgtttatctactgccctnnnnnncgggcgtgttttcttctgaaacgctgcc 433

                               
Query: 509 ttttgcagttccctccaagc 528
           | |||||| |||||||||||
Sbjct: 434 tgttgcagctccctccaagc 453



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 567 caaccttggagaacaaatagtacgaagggcgaggttcccgtgctagg 613
           ||||||| ||||||||||||||||| || | ||||| ||||||||||
Sbjct: 457 caaccttagagaacaaatagtacgagggcctaggtttccgtgctagg 503

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>gb|AC097175.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1119_H02,
             complete sequence
          Length = 138584

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 103   acatttgaaatgcaaaatgtg 123
             |||||||||||||||||||||
Sbjct: 96952 acatttgaaatgcaaaatgtg 96932

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>gb|AC018897.4|AC018897 Homo sapiens BAC clone RP11-575J11 from 11, complete sequence
          Length = 164472

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 262    agaagaaatagaataagaaat 282
              |||||||||||||||||||||
Sbjct: 126374 agaagaaatagaataagaaat 126354

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 103      acatttgaaatgcaaaatgtg 123
                |||||||||||||||||||||
Sbjct: 23893117 acatttgaaatgcaaaatgtg 23893097

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 257      tctcaagaagaaatagaataa 277
                |||||||||||||||||||||
Sbjct: 17538699 tctcaagaagaaatagaataa 17538719

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>gb|AY157712.1| Oryzias latipes putative zinc finger transcription factor (DMRT1a)
            gene, complete cds
          Length = 27078

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 168  aatattacccaatattgactc 188
            |||||||||||||||||||||
Sbjct: 8771 aatattacccaatattgactc 8791

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>dbj|AP004999.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0040H05
          Length = 172623

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 257    tctcaagaagaaatagaataa 277
              |||||||||||||||||||||
Sbjct: 150696 tctcaagaagaaatagaataa 150716

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>dbj|AP004086.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1288_D09
          Length = 124026

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 257  tctcaagaagaaatagaataa 277
            |||||||||||||||||||||
Sbjct: 8617 tctcaagaagaaatagaataa 8637

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>gb|AC133510.3| Mus musculus BAC clone RP23-409B11 from 8, complete sequence
          Length = 195449

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 98    catgtacatttgaaatgcaaa 118
             |||||||||||||||||||||
Sbjct: 47456 catgtacatttgaaatgcaaa 47436

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>emb|AJ311316.1|HCO311316 Haemonchus contortus mRNA for membrane aminopeptidase H11-4 (h11-4
            gene) isoform 4
          Length = 3328

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 372  ccatttcatagtggccaaatcgcca 396
            ||||||||||||| |||||||||||
Sbjct: 1191 ccatttcatagtgaccaaatcgcca 1167

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>gb|AC161586.5| Mus musculus BAC clone RP24-457J18 from chromosome 13, complete sequence
          Length = 146936

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    caaaatgtgaagattccact 134
              ||||||||||||||||||||
Sbjct: 131259 caaaatgtgaagattccact 131240

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>gb|AC121809.3| Mus musculus BAC clone RP23-451B23 from chromosome 8, complete sequence
          Length = 192626

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    aaagaaacagaacttgaata 239
              ||||||||||||||||||||
Sbjct: 157110 aaagaaacagaacttgaata 157091

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>gb|AC102849.5| Mus musculus, clone RP24-423P7, complete sequence
          Length = 162547

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 259    tcaagaagaaatagaataagaaat 282
              ||||||||||||||||||| ||||
Sbjct: 137884 tcaagaagaaatagaataaaaaat 137861

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>emb|AL357559.16| Human DNA sequence from clone RP11-393M18 on chromosome 1 Contains a
             novel pseudogene, a farnesyl diphosphate synthase
             (farnesyl pyrophosphate synthetase,
             dimethylallyltranstransferase, geranyltranstransferase)
             (FDPS) pseudogene, a novel gene (LOC339476) and the 5' end
             of a solute carrier family 4 (anion exchanger) member 1
             adaptor protein (SLC4A1AP) pseudogene, complete sequence
          Length = 190912

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   aagattccacttgccagaac 143
             ||||||||||||||||||||
Sbjct: 52109 aagattccacttgccagaac 52090

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>emb|AL136116.11| Human DNA sequence from clone RP1-95L4 on chromosome 6 Contains the 3'
             end of the gene for androgen induced protein (AIG-1)
             (CGI-103) (includes FLJ10485), a pseudogene similar to
             actin genes, a ribosomal protein L31 (RPL31) pseudogene
             and a pseudogene similar to hypothetical proteins PRO2207
             and similar to presenilins associated rhomboid-like
             protein, complete sequence
          Length = 100815

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   tacttccctgtaaaatgggc 485
             ||||||||||||||||||||
Sbjct: 20489 tacttccctgtaaaatgggc 20470

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>gb|AC105600.5| Rattus norvegicus 4 BAC CH230-209E1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 218874

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   acaacagcaggtctcaagaa 265
             ||||||||||||||||||||
Sbjct: 37971 acaacagcaggtctcaagaa 37990

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>emb|AL627263.6| Zebrafish DNA sequence from clone RP71-1L9 in linkage group 14 Contains
             part of a novel gene similar to ATP8B1 (ATPase, Class I,
             type 8B, member 1), part of a novel gene similar to MCF2
             (MCF.2 cell line derived transforming sequence) and two
             CpG islands, complete sequence
          Length = 174521

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   catttgaaatgcaaaatgtg 123
             ||||||||||||||||||||
Sbjct: 26530 catttgaaatgcaaaatgtg 26549

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>emb|CR925699.6| Zebrafish DNA sequence from clone RP71-18J1 in linkage group 4,
             complete sequence
          Length = 150030

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    aaactaaagcagaaggaaat 58
             ||||||||||||||||||||
Sbjct: 84929 aaactaaagcagaaggaaat 84948

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>emb|BX323579.20| Zebrafish DNA sequence from clone DKEYP-79E11 in linkage group 14,
              complete sequence
          Length = 120579

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    catttgaaatgcaaaatgtg 123
              ||||||||||||||||||||
Sbjct: 105628 catttgaaatgcaaaatgtg 105647

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>gb|AC110989.3| Homo sapiens 3q BAC RP11-15M16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 161520

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 549   taatttttccagttgtgaca 568
             ||||||||||||||||||||
Sbjct: 97876 taatttttccagttgtgaca 97857

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>gb|AC159236.2| Mus musculus BAC clone RP24-447C11 from chromosome 13, complete sequence
          Length = 160424

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 220    aaagaaacagaacttgaata 239
              ||||||||||||||||||||
Sbjct: 114389 aaagaaacagaacttgaata 114408

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>emb|BX890619.6| Zebrafish DNA sequence from clone CH211-288M1, complete sequence
          Length = 141754

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   catttgaaatgcaaaatgtg 123
             ||||||||||||||||||||
Sbjct: 40724 catttgaaatgcaaaatgtg 40743

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>gb|AC024023.4| Homo sapiens BAC clone RP11-83C7 from 4, complete sequence
          Length = 159875

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   acatttgaaatgcaaaatgt 122
             ||||||||||||||||||||
Sbjct: 41051 acatttgaaatgcaaaatgt 41070

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>gb|AC153641.3| Mus musculus 6 BAC RP23-5F24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 193417

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     aaactaaagcagaaggaaat 58
              ||||||||||||||||||||
Sbjct: 166264 aaactaaagcagaaggaaat 166283

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>gb|AF011889.1|AF011889 Human Xq28 cosmids U126G1, U142F2, U69B6, U145C10, U169A5, U84H1, U24D12,
              U80A7, U153E6, L35485, and R7-163A8 containing iduronate
              2-sulfatase gene and pseudogene, complete sequence
          Length = 326663

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 548    gtaatttttccagttgtgac 567
              ||||||||||||||||||||
Sbjct: 126650 gtaatttttccagttgtgac 126669

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>emb|AL713978.9| Mouse DNA sequence from clone RP23-159H8 on chromosome X, complete
              sequence
          Length = 183455

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 548    gtaatttttccagttgtgac 567
              ||||||||||||||||||||
Sbjct: 161895 gtaatttttccagttgtgac 161876

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>gb|AC154742.2| Mus musculus BAC clone RP24-392F16 from 13, complete sequence
          Length = 129749

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   caaaatgtgaagattccact 134
             ||||||||||||||||||||
Sbjct: 16131 caaaatgtgaagattccact 16112

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>emb|CR383662.9| Zebrafish DNA sequence from clone DKEY-207J16 in linkage group 4,
             complete sequence
          Length = 174773

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    aaactaaagcagaaggaaat 58
             ||||||||||||||||||||
Sbjct: 32128 aaactaaagcagaaggaaat 32109

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>emb|CT574592.2| Pan troglodytes chromosome X clone PTB-082B15 map Xq28, complete
             sequence
          Length = 228540

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 548   gtaatttttccagttgtgac 567
             ||||||||||||||||||||
Sbjct: 87390 gtaatttttccagttgtgac 87409

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>gb|AC131028.13| Mus musculus chromosome 3, clone RP23-293M23, complete sequence
          Length = 264928

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 259    tcaagaagaaatagaataagaaat 282
              ||||||||||||||||||| ||||
Sbjct: 177248 tcaagaagaaatagaataaaaaat 177271

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>gb|AC157955.2| Gallus gallus BAC clone TAM31-4B17 from chromosome unknown, complete
             sequence
          Length = 181590

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 102   tacatttgaaatgcaaaatgtgaa 125
             |||||||||||||||||| |||||
Sbjct: 42523 tacatttgaaatgcaaaaggtgaa 42546

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>gb|AC158368.2| Gallus gallus BAC clone CH261-77E11 from chromosome unknown, complete
              sequence
          Length = 180657

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 102    tacatttgaaatgcaaaatgtgaa 125
              |||||||||||||||||| |||||
Sbjct: 169197 tacatttgaaatgcaaaaggtgaa 169220

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>gb|AC171684.1| Mus musculus BAC clone RP23-69D21 from chromosome 8, complete sequence
          Length = 255017

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   aaagaaacagaacttgaata 239
             ||||||||||||||||||||
Sbjct: 18038 aaagaaacagaacttgaata 18019

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>gb|AC153640.6| Mus musculus 6 BAC RP23-230A2 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 208897

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 39   aaactaaagcagaaggaaat 58
            ||||||||||||||||||||
Sbjct: 5681 aaactaaagcagaaggaaat 5700

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>emb|AL929244.8| Mouse DNA sequence from clone RP23-456L5 on chromosome 2, complete
             sequence
          Length = 86351

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 90    tatataaccatgtacatttgaaat 113
             ||||||| ||||||||||||||||
Sbjct: 22771 tatataatcatgtacatttgaaat 22794


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,924,164
Number of Sequences: 3902068
Number of extensions: 5924164
Number of successful extensions: 115154
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114944
Number of HSP's gapped (non-prelim): 195
length of query: 613
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 590
effective length of database: 17,143,297,704
effective search space: 10114545645360
effective search space used: 10114545645360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result