>SSU72_YEAST (P53538) Protein SSU72|
          Length = 206

 Score =  100 bits (248), Expect = 6e-21
 Identities = 57/141 (40%), Positives = 83/141 (58%), Gaps = 7/141 (4%)
 Frame = -3

Query: 724 IYDDXRRKDPDLYKRNGLLPMLKRNISVKLAPQRWQDNTGDGVFDMILTFEERVFDLVVE 545
           IY+D   +  D YK NGLL ML RN  +K AP++WQ++T   VFD + T EER FD V E
Sbjct: 67  IYNDLLSQSADRYKSNGLLQMLDRNRRLKKAPEKWQESTK--VFDFVFTCEERCFDAVCE 124

Query: 544 DMNNREQRLLKSVLIINMDVKDNHEEAAVGAKLALDLC----HKLEAVADD---WEEIID 386
           D+ NR  +L K V +IN+D+KD+ E A +G+K  L+L      K+E    D   +E+ I 
Sbjct: 125 DLMNRGGKLNKIVHVINVDIKDDDENAKIGSKAILELADMLNDKIEQCEKDDIPFEDCIM 184

Query: 385 DLVAAFEKQHKRKLTYYISFY 323
           D++  ++  H +  + Y   Y
Sbjct: 185 DILTEWQSSHSQLPSLYAPSY 205

>Y303_ARCFU (O29939) Hypothetical protein AF0303|
          Length = 397

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -3

Query: 658 KRNISVKLAPQRWQDNTGDGV-FDMILT---FEERVFDLVVEDMNNREQR 521
           K   S+ L P  W    GDGV F++ +    FEE VF   ++  +N E+R
Sbjct: 303 KLRFSIALHPDVWDPEKGDGVTFEVYIRDEGFEELVFSKYIDPKHNPEER 352

>MURD_STAEQ (Q5HQ09) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 449

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 446 KLRPNSSFFMVIFHVHIDYQHALQ*PLLAVIHIFNN*VEDPLLKGEYHIKHPI 604
           K +P+ +    I+  H+DY   L+    A   I+ N  +D  L   YH +H I
Sbjct: 177 KYKPHIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDYLICNYHQRHLI 229

>PCCB_RHOER (Q06101) Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) (PCCase)|
           (Propanoyl-CoA:carbon dioxide ligase)
          Length = 476

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 478 NHEEAAVGAKLALDLCHK--LEAVADDWEEIIDDLVAA 371
           N E A +GAK A+ + HK  L A  DD  E + D +AA
Sbjct: 389 NSEVAVMGAKAAVGILHKRALAAAPDDEREALHDRLAA 426


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,402,611
Number of Sequences: 219361
Number of extensions: 1600103
Number of successful extensions: 4189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4188
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7479594804
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)