| Clone Name | rbags33m16 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | MS2_ARATH (Q08891) Male sterility protein 2 | 79 | 2e-14 | 2 | I17RD_MOUSE (Q8JZL1) Interleukin-17 receptor D precursor (IL-17 ... | 30 | 6.3 | 3 | VF16_VACCC (P21021) Protein F16 | 30 | 8.2 | 4 | CSTN1_MOUSE (Q9EPL2) Calsyntenin-1 precursor | 30 | 8.2 |
|---|
>MS2_ARATH (Q08891) Male sterility protein 2| Length = 616 Score = 79.0 bits (193), Expect = 2e-14 Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 5/200 (2%) Frame = -3 Query: 749 FVGDLKDTMXAVPADMVVNATLVAMAVHW-----NEKGQVIYHVSSAIRNPLTGQVFEDA 585 F+ D K + VPADMVVNATL A+A H E +Y ++S+ NPL + + Sbjct: 418 FLVDPKGVLDVVPADMVVNATLAAIAKHGMAMSDPEPEINVYQIASSAINPLVFEDLAEL 477 Query: 584 CWDYFSIHPRVLENGKPLENRRPYLFKRFAYFRAYLILMYKLPLEMLHAVSLLFCGLFSQ 405 ++++ P + G P+ R LF F +L + ++ +S + + + Sbjct: 478 LYNHYKTSPCMDSKGDPIMVRLMKLFNSVDDFSDHLWRDAQERSGLMSGMSSVDSKMMQK 537 Query: 404 YYNKHNRRYTFLMLLVKLYAPYAFFKGCFDDTNLTRLRKEAKMDGKDGSLFNFDPKSMDW 225 + L +Y PY F+ G FD++N RL + D K F FD S++W Sbjct: 538 LKFICKKSVEQAKHLATIYEPYTFYGGRFDNSNTQRLMENMSEDEK--REFGFDVGSINW 595 Query: 224 HSYLLNVHVPAVLMYGRKNK 165 Y+ NVH+P + + K + Sbjct: 596 TDYITNVHIPGLRRHVLKGR 615
>I17RD_MOUSE (Q8JZL1) Interleukin-17 receptor D precursor (IL-17 receptor D)| (IL-17RD) (Interleukin-17D receptor) (IL-17D receptor) (Interleukin-17 receptor-like protein) (Sef homolog) (mSef) Length = 738 Score = 30.4 bits (67), Expect = 6.3 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Frame = +1 Query: 217 YECQ-----SIDLGSKLKRLPSLPSIFASFLNLVKFVSSKHPLKKAYGAYNLTKSIKKVY 381 Y C+ S+DL +K K + LP + A + + V +HP + Y +KS + +Y Sbjct: 482 YSCEGDVPCSLDLSTKYKLMDHLPELCAHLHSGEQEVLGQHPGHSSRRNYFRSKSGRSLY 541 Query: 382 LRLC 393 + +C Sbjct: 542 VAIC 545
>VF16_VACCC (P21021) Protein F16| Length = 231 Score = 30.0 bits (66), Expect = 8.2 Identities = 14/35 (40%), Positives = 23/35 (65%) Frame = +1 Query: 352 NLTKSIKKVYLRLCLL*YWENNPQNNRLTACNISS 456 N TK I ++R CL ++ NP + R+T+CNI++ Sbjct: 89 NRTKPISMYFVRDCLA--FDGNPPSFRMTSCNINA 121
>CSTN1_MOUSE (Q9EPL2) Calsyntenin-1 precursor| Length = 979 Score = 30.0 bits (66), Expect = 8.2 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -3 Query: 230 DWHSYLLNVHVPAVLMY 180 DWH ++LNV VP+V +Y Sbjct: 457 DWHHFVLNVEVPSVTLY 473 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 115,051,715 Number of Sequences: 219361 Number of extensions: 2499985 Number of successful extensions: 6097 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 5858 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6089 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 8127969984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)