ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33m16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MS2_ARATH (Q08891) Male sterility protein 2 79 2e-14
2I17RD_MOUSE (Q8JZL1) Interleukin-17 receptor D precursor (IL-17 ... 30 6.3
3VF16_VACCC (P21021) Protein F16 30 8.2
4CSTN1_MOUSE (Q9EPL2) Calsyntenin-1 precursor 30 8.2

>MS2_ARATH (Q08891) Male sterility protein 2|
          Length = 616

 Score = 79.0 bits (193), Expect = 2e-14
 Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 5/200 (2%)
 Frame = -3

Query: 749  FVGDLKDTMXAVPADMVVNATLVAMAVHW-----NEKGQVIYHVSSAIRNPLTGQVFEDA 585
            F+ D K  +  VPADMVVNATL A+A H       E    +Y ++S+  NPL  +   + 
Sbjct: 418  FLVDPKGVLDVVPADMVVNATLAAIAKHGMAMSDPEPEINVYQIASSAINPLVFEDLAEL 477

Query: 584  CWDYFSIHPRVLENGKPLENRRPYLFKRFAYFRAYLILMYKLPLEMLHAVSLLFCGLFSQ 405
             ++++   P +   G P+  R   LF     F  +L    +    ++  +S +   +  +
Sbjct: 478  LYNHYKTSPCMDSKGDPIMVRLMKLFNSVDDFSDHLWRDAQERSGLMSGMSSVDSKMMQK 537

Query: 404  YYNKHNRRYTFLMLLVKLYAPYAFFKGCFDDTNLTRLRKEAKMDGKDGSLFNFDPKSMDW 225
                  +       L  +Y PY F+ G FD++N  RL +    D K    F FD  S++W
Sbjct: 538  LKFICKKSVEQAKHLATIYEPYTFYGGRFDNSNTQRLMENMSEDEK--REFGFDVGSINW 595

Query: 224  HSYLLNVHVPAVLMYGRKNK 165
              Y+ NVH+P +  +  K +
Sbjct: 596  TDYITNVHIPGLRRHVLKGR 615



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>I17RD_MOUSE (Q8JZL1) Interleukin-17 receptor D precursor (IL-17 receptor D)|
           (IL-17RD) (Interleukin-17D receptor) (IL-17D receptor)
           (Interleukin-17 receptor-like protein) (Sef homolog)
           (mSef)
          Length = 738

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +1

Query: 217 YECQ-----SIDLGSKLKRLPSLPSIFASFLNLVKFVSSKHPLKKAYGAYNLTKSIKKVY 381
           Y C+     S+DL +K K +  LP + A   +  + V  +HP   +   Y  +KS + +Y
Sbjct: 482 YSCEGDVPCSLDLSTKYKLMDHLPELCAHLHSGEQEVLGQHPGHSSRRNYFRSKSGRSLY 541

Query: 382 LRLC 393
           + +C
Sbjct: 542 VAIC 545



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>VF16_VACCC (P21021) Protein F16|
          Length = 231

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 352 NLTKSIKKVYLRLCLL*YWENNPQNNRLTACNISS 456
           N TK I   ++R CL   ++ NP + R+T+CNI++
Sbjct: 89  NRTKPISMYFVRDCLA--FDGNPPSFRMTSCNINA 121



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>CSTN1_MOUSE (Q9EPL2) Calsyntenin-1 precursor|
          Length = 979

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 230 DWHSYLLNVHVPAVLMY 180
           DWH ++LNV VP+V +Y
Sbjct: 457 DWHHFVLNVEVPSVTLY 473


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,051,715
Number of Sequences: 219361
Number of extensions: 2499985
Number of successful extensions: 6097
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6089
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 8127969984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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