>POLG_HCVH9 (Q81754) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3010

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 272  THYLTSLSVPRHLTSLHLMVYISMTIFADNSWKPTFDNWIC 394
            TH LTSL+V + L  LH+ +    T     SW     +WIC
Sbjct: 1944 THILTSLTVTQLLKRLHVWISSDCTAPCAGSWLKDVWDWIC 1984

>BIR1F_MOUSE (Q9JIB6) Baculoviral IAP repeat-containing protein 1f (Neuronal|
           apoptosis inhibitory protein 6)
          Length = 1403

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = -1

Query: 413 SISFKSSRSNCQMSVSSCCLQILSSIYTPSSEGLSDDVAQKDLSSNV 273
           S+ +K++  + Q +VSSC    L+ +++   E  SDD+A+  +  +V
Sbjct: 676 SLKYKATAESLQATVSSCGQLALTGLFSSCFEFNSDDLAEAGVDEDV 722

>Y1143_METJA (Q58543) Hypothetical mscS family protein MJ1143|
          Length = 361

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = +1

Query: 7   LLTEKITMHTKYNYTVTYIGLILFLLSGKHPDFL 108
           +++E +  +T YNY ++ I +ILF++ GK+ + L
Sbjct: 6   MISEILMHNTVYNYILSLISIILFIVIGKYANAL 39

>BIR1G_MOUSE (Q9JIB3) Baculoviral IAP repeat-containing protein 1g (Neuronal|
           apoptosis inhibitory protein 7)
          Length = 1402

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = -1

Query: 413 SISFKSSRSNCQMSVSSCCLQILSSIYTPSSEGLSDDVAQKDLSSNV 273
           S+ +K++  + Q +VSSC    L+ +++   E  SDD+A+  +  +V
Sbjct: 676 SLKYKATAESLQATVSSCGQLALTGLFSSCFEFNSDDLAEAGVDEDV 722

>YNFD_ECOLI (P76172) Hypothetical protein ynfD precursor|
          Length = 115

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
 Frame = -1

Query: 398 SSRSNCQMSVSSCCLQILSSIYTP-------SSEGLSDDVAQKDLSSNV 273
           SSR    M +S+CC  +L ++ +P       S E +  D++Q+ +++ V
Sbjct: 8   SSRKELMMKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGV 56


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,951,787
Number of Sequences: 219361
Number of extensions: 1953026
Number of successful extensions: 4760
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4760
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)