ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags34b12 |
|---|---|
| Clone Library Name | barley_pub |
>RBL1_HUMAN (P28749) Retinoblastoma-like protein 1 (107 kDa| retinoblastoma-associated protein) (PRB1) (P107) Length = 1068 Score = 36.2 bits (82), Expect = 0.094 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Frame = -2 Query: 628 LDHQRSSPFSNLPDM--SPKKVSSSHNVYISPLRQTKKDALLSPSSRSFYACIGESTHAY 455 +D SPF ++ SP+++S H++YISP K + L+P S Y G Sbjct: 958 MDAPPLSPFPHIKQQPGSPRRISQQHSIYISP---HKNGSGLTPRSALLYKFNG------ 1008 Query: 454 QSSSEDLAAINNCLNYTTRRINTRI 380 S S+ L INN + +R R+ Sbjct: 1009 -SPSKSLKDINNMIRQGEQRTKKRV 1032
>RBL1_MOUSE (Q64701) Retinoblastoma-like protein 1 (107 kDa| retinoblastoma-associated protein) (PRB1) (P107) Length = 1063 Score = 35.0 bits (79), Expect = 0.21 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Frame = -2 Query: 628 LDHQRSSPFSNLPDM--SPKKVSSSHNVYISPLRQTKKDALLSPSSRSFYACIGESTHAY 455 +D SPF ++ SP+++S H++Y+SP K A L+P S Y G Sbjct: 953 MDAPPLSPFPHIKQQPGSPRRISQQHSLYVSP---HKNGAGLTPRSALLYKFNG------ 1003 Query: 454 QSSSEDLAAINNCLNYTTRRINTRI 380 S S+ L INN + ++ R+ Sbjct: 1004 -SPSKSLKDINNMIRQGEQKTKKRV 1027
>MDS3_YEAST (P53094) Negative regulator of sporulation MDS3 (MCK1 dosage| suppressor 3) Length = 1487 Score = 35.0 bits (79), Expect = 0.21 Identities = 27/108 (25%), Positives = 51/108 (47%) Frame = -2 Query: 586 MSPKKVSSSHNVYISPLRQTKKDALLSPSSRSFYACIGESTHAYQSSSEDLAAINNCLNY 407 +SPK VS S+++Y P+R+T+ + S S+ + + A S++E L N L Sbjct: 692 VSPKPVSKSNSIY-RPIRKTESSSTTSSSNGMIFRVPFKEKAAVTSNTEALLESNLSLQE 750 Query: 406 TTRRINTRINFDMVSDSVVAGSLGQPNGVPASSDPAGSFSFLSRKGNP 263 +RR ++ ++ + S ++ S+ + +S P S G P Sbjct: 751 LSRRRSSLMS--IPSGELLRSSISEAEHQRRASHPLTSSPLFEDSGTP 796
>RBL2_RAT (O55081) Retinoblastoma-like protein 2 (130 kDa| retinoblastoma-associated protein) (PRB2) (P130) (RBR-2) (PPAR-alpha-interacting complex protein 128) (PRIC128) Length = 1135 Score = 33.5 bits (75), Expect = 0.61 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Frame = -2 Query: 628 LDHQRSSPFSNLPDMSPKKV--SSSHNVYISPLRQTKKDALLSPSSRSFY 485 +D SP+ + SP++V S SH +YISP K +A+LSP + FY Sbjct: 1025 MDTPPLSPYPFVRTGSPRRVQLSQSHPIYISP---HKNEAMLSPREKIFY 1071
>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA protein kinase) Length = 1007 Score = 30.0 bits (66), Expect = 6.7 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +1 Query: 448 SSDKHGCFHRYKHKNSSNLVKAMHPSWFDAEEKYKHYGK 564 S +KH + KHK+ S K H S D ++K+KH K Sbjct: 37 SQNKHSRHKKKKHKHRSKHKKHKHSSEEDRDKKHKHKHK 75
>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4 kinase) Length = 1007 Score = 30.0 bits (66), Expect = 6.7 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +1 Query: 448 SSDKHGCFHRYKHKNSSNLVKAMHPSWFDAEEKYKHYGK 564 S +KH + KHK+ S K H S D ++K+KH K Sbjct: 36 SQNKHSRHKKKKHKHRSKHKKHKHSSEEDKDKKHKHKHK 74
>RUNT_DROME (P22814) Segmentation protein Runt| Length = 510 Score = 30.0 bits (66), Expect = 6.7 Identities = 17/57 (29%), Positives = 25/57 (43%) Frame = -2 Query: 640 IAKFLDHQRSSPFSNLPDMSPKKVSSSHNVYISPLRQTKKDALLSPSSRSFYACIGE 470 +A H SS S+ PD+S SSS N SP K + ++ S + + E Sbjct: 57 LANTSTHSASSTGSSTPDLSTNNTSSSSNATTSPQNSAKMPSSMTDMFASLHEMLQE 113
>KCY1_BORGA (Q662N3) Cytidylate kinase 1 (EC 2.7.4.14) (CK 1) (Cytidine| monophosphate kinase 1) (CMP kinase 1) Length = 221 Score = 30.0 bits (66), Expect = 6.7 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = +1 Query: 448 SSDKHGCFHRYKHKNSSNLVKAMHPSWF--DAEEKYKHYGKMRLSLGTYLVD 597 +S K RYK +N + ++ + + D +K K YGK++LS G + +D Sbjct: 145 ASVKVRALRRYKQRNGNETLEELERTLKIRDDVDKRKQYGKLKLSKGVFYLD 196
>KCY1_BORBU (O51154) Cytidylate kinase 1 (EC 2.7.4.14) (CK 1) (Cytidine| monophosphate kinase 1) (CMP kinase 1) Length = 221 Score = 30.0 bits (66), Expect = 6.7 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = +1 Query: 448 SSDKHGCFHRYKHKNSSNLVKAMHPSWF--DAEEKYKHYGKMRLSLGTYLVD 597 +S K RYK +N + ++ + + D +K K YGK++LS G + +D Sbjct: 145 ASVKVRALRRYKQRNGNETLEELERTLKRRDDVDKKKQYGKLKLSKGVFYLD 196
>YDZ5_SCHPO (O13712) Protein C14C4.05c in chromosome I| Length = 844 Score = 30.0 bits (66), Expect = 6.7 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = -2 Query: 589 DMSPKKVSSSHNVYISPLRQTKKDALLSPSS-RSFYACIGESTHAYQSSSEDLAAINNCL 413 ++ PK S S +VY SP++ + +PS+ S +S+ +Y S++ +NN + Sbjct: 261 NLKPKFTSRSSSVYASPIKSSLNSLECNPSNLLSVRKNFQQSSDSYLKSNKSFDQLNNLV 320 Query: 412 NYTT 401 +T Sbjct: 321 GLST 324
>GIDB_LEGPL (Q5WSS3) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 208 Score = 30.0 bits (66), Expect = 6.7 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +3 Query: 132 YSLTHRCTVEAFEFTHLFRRTEGLPWVRELYTGDAHLFAQESGPGLPFLDKKLNEP 299 Y+LT +E HLF LPW++ H+ +GPGLP + + +P Sbjct: 41 YNLTAIRDIETMVSKHLFDSLAILPWIK-----GNHIIDVGTGPGLPGIPLAIAKP 91
>GIDB_LEGPH (Q5ZRJ1) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 208 Score = 30.0 bits (66), Expect = 6.7 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +3 Query: 132 YSLTHRCTVEAFEFTHLFRRTEGLPWVRELYTGDAHLFAQESGPGLPFLDKKLNEP 299 Y+LT +E HLF LPW++ H+ +GPGLP + + +P Sbjct: 41 YNLTAIRDIETMVSKHLFDSLAILPWIK-----GNHIIDVGTGPGLPGIPLAIAKP 91
>GIDB_LEGPA (Q5X0Z7) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 208 Score = 30.0 bits (66), Expect = 6.7 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +3 Query: 132 YSLTHRCTVEAFEFTHLFRRTEGLPWVRELYTGDAHLFAQESGPGLPFLDKKLNEP 299 Y+LT +E HLF LPW++ H+ +GPGLP + + +P Sbjct: 41 YNLTAIRDIETMVSKHLFDSLAILPWIK-----GNHIIDVGTGPGLPGIPLAIAKP 91
>HCFC1_MOUSE (Q61191) Host cell factor (HCF) (HCF-1) (C1 factor) [Contains: HCF| N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF C-terminal chain 1; HCF C-termi Length = 2045 Score = 30.0 bits (66), Expect = 6.7 Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 9/128 (7%) Frame = -2 Query: 658 TTRRIIIAKFLDHQRSSPFSNLPDMSPKKVSSSHNVYISPLRQTKKDALLSPSSRSFYAC 479 TTR I++A L R P S + SS+ + T +ALL PS+ C Sbjct: 1246 TTRSIMVAGELGAARVVPTSTYESLQASSPSST-------MTMTALEALLCPSATVTQVC 1298 Query: 478 IGESTHAYQSSSEDLAAINN-------CLNYTTRRINTRINFDMVSDSVVAGSLGQPNG- 323 +++ + + A +N C N T + + G GQP G Sbjct: 1299 SNPPCETHETGTTNTATTSNAGSAQRVCSNPPCETHETGTT-HTATTATSNGGAGQPEGG 1357 Query: 322 -VPASSDP 302 PAS P Sbjct: 1358 QQPASGHP 1365
>TSC1_HUMAN (Q92574) Hamartin (Tuberous sclerosis 1 protein)| Length = 1164 Score = 29.6 bits (65), Expect = 8.8 Identities = 23/114 (20%), Positives = 49/114 (42%) Frame = -2 Query: 622 HQRSSPFSNLPDMSPKKVSSSHNVYISPLRQTKKDALLSPSSRSFYACIGESTHAYQSSS 443 HQR+ PFS+ + + + S+S + L PSS+SF ++ +++ S Sbjct: 1053 HQRAGPFSSRWETTMGEASASIPTTVGSL----------PSSKSFLGM--KARELFRNKS 1100 Query: 442 EDLAAINNCLNYTTRRINTRINFDMVSDSVVAGSLGQPNGVPASSDPAGSFSFL 281 E + + + + T + D+ ++ + +L P+ P + D G + Sbjct: 1101 ESQCDEDGMTSSLSESLKTELGKDLGVEAKIPLNLDGPHPSPPTPDSVGQLHIM 1154 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,022,527 Number of Sequences: 219361 Number of extensions: 2204284 Number of successful extensions: 5798 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5233 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5797 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
