ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags33l23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC122910.5| Mus musculus BAC clone RP23-54P3 from chromosome 6, complete sequence Length = 221390 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Minus Query: 214 actcctttcatctttgtttttgtt 237 |||||||||||||||||||||||| Sbjct: 18976 actcctttcatctttgtttttgtt 18953
>gb|AC125353.2| Mus musculus BAC clone RP23-455B17 from 6, complete sequence Length = 171963 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Plus Query: 214 actcctttcatctttgtttttgtt 237 |||||||||||||||||||||||| Sbjct: 39961 actcctttcatctttgtttttgtt 39984
>gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, complete sequence Length = 188992 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 219 tttcatctttgtttttgttggtttta 244 |||||| ||||||||||||||||||| Sbjct: 68487 tttcatttttgtttttgttggtttta 68512
>gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, complete sequence Length = 178925 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 219 tttcatctttgtttttgttggtttta 244 |||||| ||||||||||||||||||| Sbjct: 45278 tttcatttttgtttttgttggtttta 45303
>gb|AC138015.24| Medicago truncatula clone mth2-34m6, complete sequence Length = 126845 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 222 catctttgtttttgttggtttt 243 |||||||||||||||||||||| Sbjct: 54389 catctttgtttttgttggtttt 54368
>emb|AL360176.22| Human DNA sequence from clone RP11-124H7 on chromosome 10 Contains the 5' end of the MMP21 gene for matrix metalloproteinase 21, the UROS gene for uroporphyrinogen III synthase (congenital erythropoietic porphyria), the BCCIP gene for BRCA2 and CDKN1A interacting protein (TOK-1), the DDX32 gene for DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32 (FLJ10694, FLJ10889), the 5' UTR of a novel gene (LOC92565) and three CpG islands, complete sequence Length = 155699 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 219 tttcatctttgtttttgttggtttta 244 |||||| ||||||||||||||||||| Sbjct: 128468 tttcatttttgtttttgttggtttta 128443
>gb|AC143337.27| Medicago truncatula clone mth2-35d19, complete sequence Length = 118139 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 222 catctttgtttttgttggtttt 243 |||||||||||||||||||||| Sbjct: 80532 catctttgtttttgttggtttt 80553
>gb|AF295534.1|AF295534 Toxoplasma gondii phosphoglucomutase/parafusin related protein 1 (PRP1) mRNA, complete cds Length = 2294 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 346 tccatttctttcaagagattct 367 |||||||||||||||||||||| Sbjct: 1773 tccatttctttcaagagattct 1752
>gb|AC010092.4| Homo sapiens BAC clone RP11-306M1 from 2, complete sequence Length = 140226 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 225 ctttgtttttgttggttttatt 246 |||||||||||||||||||||| Sbjct: 24696 ctttgtttttgttggttttatt 24675
>emb|BX546479.5| Human DNA sequence from clone RP11-438N17 on chromosome 22, complete sequence Length = 172294 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 219 tttcatctttgtttttgttggtttta 244 |||||| ||||||||||||||||||| Sbjct: 92104 tttcatttttgtttttgttggtttta 92079
>emb|AL671532.13| Human DNA sequence from clone RP11-512A4 on chromosome 22, complete sequence Length = 211173 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 219 tttcatctttgtttttgttggtttta 244 |||||| ||||||||||||||||||| Sbjct: 180158 tttcatttttgtttttgttggtttta 180183
>gb|AC111134.10| Mus musculus chromosome 3, clone RP23-349J3, complete sequence Length = 223171 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 tttgtttttgttggttttatt 246 ||||||||||||||||||||| Sbjct: 214535 tttgtttttgttggttttatt 214515
>gb|BC104296.1| Mus musculus olfactory receptor 1339, mRNA (cDNA clone IMAGE:40043073), partial cds Length = 947 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 644 atgtcatctctgctttcctca 664 ||||||||||||||||||||| Sbjct: 844 atgtcatctctgctttcctca 864
>gb|BC104297.1| Mus musculus olfactory receptor 1339, mRNA (cDNA clone IMAGE:40043079), partial cds Length = 947 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 644 atgtcatctctgctttcctca 664 ||||||||||||||||||||| Sbjct: 844 atgtcatctctgctttcctca 864
>gb|AC151132.3| Bos taurus BAC CH240-106N15 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 171239 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 tctttgtttttgttggtttta 244 ||||||||||||||||||||| Sbjct: 159697 tctttgtttttgttggtttta 159677
>gb|AY318544.1| Mus musculus olfactory receptor Olfr1339 (Olfr1339) gene, complete cds Length = 948 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 644 atgtcatctctgctttcctca 664 ||||||||||||||||||||| Sbjct: 845 atgtcatctctgctttcctca 865
>ref|NM_146852.1| Mus musculus olfactory receptor 1339 (Olfr1339), mRNA Length = 948 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 644 atgtcatctctgctttcctca 664 ||||||||||||||||||||| Sbjct: 845 atgtcatctctgctttcctca 865
>emb|CT009661.10| Mouse DNA sequence from clone CH29-621D18 on chromosome 17, complete sequence Length = 224982 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 588 ctcctttgttgcccttctgttcacc 612 ||||||||||| ||||||||||||| Sbjct: 130085 ctcctttgttgtccttctgttcacc 130109
>emb|AL713986.10| Mouse DNA sequence from clone RP23-142G13 on chromosome X, complete sequence Length = 204903 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 aattgtatgcaatgaatttcc 38 ||||||||||||||||||||| Sbjct: 25026 aattgtatgcaatgaatttcc 25006
>gb|AC118004.6| Mus musculus chromosome 16, clone RP23-212P2, complete sequence Length = 205796 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 aaataactttttcatactgca 112 ||||||||||||||||||||| Sbjct: 144239 aaataactttttcatactgca 144219
>gb|AC157380.6| Mus musculus chromosome 3, clone RP23-404C21, complete sequence Length = 196528 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 tttgtttttgttggttttatt 246 ||||||||||||||||||||| Sbjct: 96011 tttgtttttgttggttttatt 96031
>emb|AL359739.8| Human DNA sequence from clone RP11-243M12 on chromosome 1 Contains a ribosomal protein S20 (RPS20) pseudogene, complete sequence Length = 170284 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ttacttatataattgtatgca 28 ||||||||||||||||||||| Sbjct: 154953 ttacttatataattgtatgca 154933
>emb|AL121997.7|HSJ1043F6 Human DNA sequence from clone RP5-1043F6 on chromosome 1q42.11-42.3 Contains part of the CHS1 gene for Chediak-Higashi syndrome 1 protein and a lactate dehydrogenase A (LDHA) processed pseudogene, complete sequence Length = 114526 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 519 gtttcacttctttgtattcca 539 ||||||||||||||||||||| Sbjct: 87619 gtttcacttctttgtattcca 87599
>emb|CR457462.13| Zebrafish DNA sequence from clone CH211-1O7 in linkage group 13, complete sequence Length = 166823 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 atagatatgaaataacttttt 103 ||||||||||||||||||||| Sbjct: 61232 atagatatgaaataacttttt 61212
>gb|AC114668.12| Mus musculus chromosome 3, clone RP24-176P19, complete sequence Length = 183890 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 tttgtttttgttggttttatt 246 ||||||||||||||||||||| Sbjct: 28809 tttgtttttgttggttttatt 28789
>dbj|AB252389.1| Uncultured rumen bacterium frdA gene for putative fumarate reductase, partial cds, clone:Uc071 Length = 351 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 360 gagattctgctgggtcaacac 380 ||||||||||||||||||||| Sbjct: 312 gagattctgctgggtcaacac 292
>gb|AY073239.1| Mus musculus olfactory receptor MOR258-2 gene, complete cds Length = 948 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 644 atgtcatctctgctttcctca 664 ||||||||||||||||||||| Sbjct: 845 atgtcatctctgctttcctca 865
>gb|AC109483.3| Homo sapiens chromosome 5 clone RP11-500H9, complete sequence Length = 70474 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 gttttattcctgaaagctttc 259 ||||||||||||||||||||| Sbjct: 22367 gttttattcctgaaagctttc 22387
>gb|AC092801.2| Homo sapiens chromosome 1 clone RP11-36N20, complete sequence Length = 151199 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 320 aatggccagcacaatccagctgacactccattt 352 ||||||||||||||||| |||| ||||||||| Sbjct: 45023 aatggccagcacaatcccactgaaactccattt 45055
>gb|AC096575.1| Homo sapiens BAC clone RP11-521E5 from 4, complete sequence Length = 180423 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 ttgtttttgttggttttattc 247 ||||||||||||||||||||| Sbjct: 142361 ttgtttttgttggttttattc 142381
>gb|AC009334.8| Homo sapiens chromosome 1, clone RP11-45L2, complete sequence Length = 165618 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 519 gtttcacttctttgtattcca 539 ||||||||||||||||||||| Sbjct: 63077 gtttcacttctttgtattcca 63057
>gb|AC091893.3| Homo sapiens chromosome 5 clone RP11-12P19, complete sequence Length = 154364 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 gttttattcctgaaagctttc 259 ||||||||||||||||||||| Sbjct: 143339 gttttattcctgaaagctttc 143359
>emb|AL935117.16| Zebrafish DNA sequence from clone CH211-197G22 in linkage group 18, complete sequence Length = 213808 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 taactttttcatactgcaatg 115 ||||||||||||||||||||| Sbjct: 54206 taactttttcatactgcaatg 54226
>emb|CT485615.6| Mouse DNA sequence from clone RP23-32L22 on chromosome 16, complete sequence Length = 197249 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 aaataactttttcatactgca 112 ||||||||||||||||||||| Sbjct: 186459 aaataactttttcatactgca 186479
>gb|AC170998.2| Mus musculus BAC clone RP24-137E7 from chromosome 17, complete sequence Length = 148715 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 588 ctcctttgttgcccttctgttcacc 612 ||||||||||| ||||||||||||| Sbjct: 89562 ctcctttgttgtccttctgttcacc 89538
>emb|AL669952.8| Mouse DNA sequence from clone RP23-154A15 on chromosome 4, complete sequence Length = 183213 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 644 atgtcatctctgctttcctca 664 ||||||||||||||||||||| Sbjct: 131970 atgtcatctctgctttcctca 131990
>gb|AC114666.31| Mus musculus chromosome 5, clone RP24-175N6, complete sequence Length = 193158 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 tttgtttttgttggttttattcct 249 |||||||||||||||||| ||||| Sbjct: 156777 tttgtttttgttggtttttttcct 156800
>gb|AC110525.10| Mus musculus chromosome 8, clone RP23-82N11, complete sequence Length = 153281 Score = 40.1 bits (20), Expect = 9.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 226 tttgtttttgttggttttattcctgaaagctt 257 |||||||||||| ||||| || |||||||||| Sbjct: 69649 tttgtttttgtttgttttttttctgaaagctt 69618
>gb|DQ224248.1| Brachypelma emelia isolate MTA031a cytochrome c oxidase subunit 1 (CO1) gene, partial cds; mitochondrial Length = 205 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 tctttgtttttgttggtttt 243 |||||||||||||||||||| Sbjct: 46 tctttgtttttgttggtttt 65
>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome Length = 1913428 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 560 tgcggtagaaatttgccaag 579 |||||||||||||||||||| Sbjct: 1119462 tgcggtagaaatttgccaag 1119443
>gb|AC102410.5| Mus musculus chromosome 18, clone RP24-369O1, complete sequence Length = 164142 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 cttcttcatccagatcgatt 433 |||||||||||||||||||| Sbjct: 83204 cttcttcatccagatcgatt 83185
>gb|AC169698.1| Rhesus Macaque BAC CH250-254N3 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 179377 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 tactctttacttatataatt 21 |||||||||||||||||||| Sbjct: 172179 tactctttacttatataatt 172198
>gb|U80455.1| Caenorhabditis elegans cosmid T01D1, complete sequence Length = 31883 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 622 ctcatcaacagcaaatgctg 641 |||||||||||||||||||| Sbjct: 5308 ctcatcaacagcaaatgctg 5327
>gb|AC163297.4| Mus musculus BAC clone RP23-106G24 from chromosome 3, complete sequence Length = 194271 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 ctttcatctttgtttttgtt 237 |||||||||||||||||||| Sbjct: 81643 ctttcatctttgtttttgtt 81662
>gb|AC118472.8| Mus musculus chromosome 19, clone RP23-187N14, complete sequence Length = 222869 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 536 tccactgctggagaggaatg 555 |||||||||||||||||||| Sbjct: 63803 tccactgctggagaggaatg 63822
>gb|AC150488.2| Bos taurus BAC CH240-466B8 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 135467 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ttgtttttgttggttttatt 246 |||||||||||||||||||| Sbjct: 135324 ttgtttttgttggttttatt 135305
>gb|AC149669.2| Bos taurus BAC CH240-57J21 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 227069 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 actccatttctttcaagagattct 367 ||||||||||||||||| |||||| Sbjct: 183136 actccatttctttcaagggattct 183159
>gb|AC107763.25| Mus musculus chromosome 5, clone RP23-180F3, complete sequence Length = 219488 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctttgtttttgttggtttta 244 |||||||||||||||||||| Sbjct: 208825 ctttgtttttgttggtttta 208806
>gb|AF233439.7| Homo sapiens chromosome 8 clones GS1-24F4, CTD-2629I16 map p23.1, complete sequences Length = 231283 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 atctttgtttttgttggttt 242 |||||||||||||||||||| Sbjct: 26492 atctttgtttttgttggttt 26511
>gb|AC111110.21| Mus musculus chromosome 1, clone RP23-201B13, complete sequence Length = 246043 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 ctttgtttttgttggtttta 244 |||||||||||||||||||| Sbjct: 71578 ctttgtttttgttggtttta 71597
>gb|AC133956.4| Mus musculus BAC clone RP23-347E10 from chromosome 16, complete sequence Length = 171261 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 624 catcaacagcaaatgctgtgatgtcatc 651 ||||||||||||||||| |||| ||||| Sbjct: 95831 catcaacagcaaatgctttgatatcatc 95858
>emb|CR962127.1| Medicago truncatula chromosome 5 clone mth2-181n9, COMPLETE SEQUENCE Length = 119528 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 ctttgtttttgttggttttattcc 248 |||||||||||||| ||||||||| Sbjct: 74824 ctttgtttttgttgattttattcc 74847
>gb|AC124429.4| Mus musculus BAC clone RP24-239N4 from chromosome 13, complete sequence Length = 168858 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ttgtttttgttggttttatt 246 |||||||||||||||||||| Sbjct: 106483 ttgtttttgttggttttatt 106502
>gb|AC122219.3| Mus musculus BAC clone RP23-119F18 from 3, complete sequence Length = 196563 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 ctttcatctttgtttttgtt 237 |||||||||||||||||||| Sbjct: 10385 ctttcatctttgtttttgtt 10366
>emb|AJ245480.1|BNA245480 Brassica napus subsp. napus AtPP-A14 gene for putative S-adenosyl methionine salycilic acid carboxyl methionyl transferase and slg gene for S-locus glycoprotein, cultivar T2 Length = 87844 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 218 ctttcatctttgtttttgttggttttat 245 ||||| |||| ||||||||||||||||| Sbjct: 66518 ctttcttcttcgtttttgttggttttat 66545
>ref|XM_846392.1| PREDICTED: Canis familiaris similar to nuclear receptor co-repressor 1, transcript variant 2 (LOC479515), mRNA Length = 7723 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ttgtttttgttggttttatt 246 |||||||||||||||||||| Sbjct: 7665 ttgtttttgttggttttatt 7684
>ref|XM_536653.2| PREDICTED: Canis familiaris similar to nuclear receptor co-repressor 1, transcript variant 1 (LOC479515), mRNA Length = 8332 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ttgtttttgttggttttatt 246 |||||||||||||||||||| Sbjct: 7485 ttgtttttgttggttttatt 7504
>ref|XM_858633.1| PREDICTED: Canis familiaris similar to nuclear receptor co-repressor 1, transcript variant 4 (LOC479515), mRNA Length = 1581 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ttgtttttgttggttttatt 246 |||||||||||||||||||| Sbjct: 1523 ttgtttttgttggttttatt 1542
>ref|XM_858611.1| PREDICTED: Canis familiaris similar to nuclear receptor co-repressor 1, transcript variant 3 (LOC479515), mRNA Length = 7675 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ttgtttttgttggttttatt 246 |||||||||||||||||||| Sbjct: 7617 ttgtttttgttggttttatt 7636
>ref|XM_721576.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06084) partial mRNA Length = 1296 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ttgtttttgttggttttatt 246 |||||||||||||||||||| Sbjct: 608 ttgtttttgttggttttatt 589
>ref|XM_535332.2| PREDICTED: Canis familiaris similar to putative S1 RNA binding domain protein (LOC478157), mRNA Length = 1560 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 ttctgctgactttgcctctt 276 |||||||||||||||||||| Sbjct: 604 ttctgctgactttgcctctt 585
>gb|AC110028.8| Mus musculus chromosome 6, clone RP23-44E17, complete sequence Length = 243770 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 78 catacatagatatgaaataactttttca 105 |||| |||||||||||||| |||||||| Sbjct: 152624 catatatagatatgaaatatctttttca 152597
>gb|AC144484.5| Medicago truncatula clone mth2-30o16, complete sequence Length = 121144 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 catctttgtttttgttggtt 241 |||||||||||||||||||| Sbjct: 15858 catctttgtttttgttggtt 15877
>gb|AC152818.17| Medicago truncatula clone mth2-85g12, complete sequence Length = 142154 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 catctttgtttttgttggtt 241 |||||||||||||||||||| Sbjct: 15860 catctttgtttttgttggtt 15879
>emb|AL591543.22| Human DNA sequence from clone RP13-198D9 on chromosome 9 Contains a novel gene (KIAA2015), a novel gene, a tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide (YWHAB) pseudogene and two CpG islands, complete sequence Length = 179501 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 473 ggcaatttcctcttcttgaa 492 |||||||||||||||||||| Sbjct: 25302 ggcaatttcctcttcttgaa 25283
>gb|AY191584.1| Mus musculus desmoglein 4 (Dsg4) mRNA, complete cds Length = 3478 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 cttcttcatccagatcgatt 433 |||||||||||||||||||| Sbjct: 1029 cttcttcatccagatcgatt 1010
>gb|AY227349.1| Mus musculus desmoglein 4 (Dsg4) mRNA, complete cds Length = 3126 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 cttcttcatccagatcgatt 433 |||||||||||||||||||| Sbjct: 895 cttcttcatccagatcgatt 876
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 220 ttcatctttgtttttgttggtttt 243 ||||||||||||||| |||||||| Sbjct: 1944493 ttcatctttgttttttttggtttt 1944470
>gb|AC158350.7| Mus musculus chromosome 8, clone RP24-250A3, complete sequence Length = 174965 Score = 40.1 bits (20), Expect = 9.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 226 tttgtttttgttggttttattcctgaaagctt 257 |||||||||||| ||||| || |||||||||| Sbjct: 165250 tttgtttttgtttgttttttttctgaaagctt 165219
>emb|CR354613.7| Zebrafish DNA sequence from clone CH211-112G7 in linkage group 21, complete sequence Length = 179432 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 219 tttcatctttgtttttgttggttttatt 246 ||||||||||||| |||||| ||||||| Sbjct: 165195 tttcatctttgttattgttgtttttatt 165222
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 Length = 1779707 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 acagtacaacttcttcttca 421 |||||||||||||||||||| Sbjct: 1083847 acagtacaacttcttcttca 1083866
>dbj|AB232924.1| Oryzias latipes hox gene cluster, complete cds, contains hoxDb Length = 220448 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 ctttcatctttgtttttgtt 237 |||||||||||||||||||| Sbjct: 77885 ctttcatctttgtttttgtt 77904
>gb|AC099059.2| Homo sapiens chromosome 3 clone RP11-756A10, complete sequence Length = 158576 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ttgtttttgttggttttatt 246 |||||||||||||||||||| Sbjct: 116409 ttgtttttgttggttttatt 116428
>gb|AC055707.33| Homo sapiens 12 BAC RP11-877E17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 138370 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ttgtttttgttggttttatt 246 |||||||||||||||||||| Sbjct: 41430 ttgtttttgttggttttatt 41411
>gb|AC011270.9| Homo sapiens chromosome 15, clone RP11-5O23, complete sequence Length = 149762 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 tatgaaataactttttcata 107 |||||||||||||||||||| Sbjct: 102544 tatgaaataactttttcata 102525
>gb|AC108060.3| Homo sapiens BAC clone RP11-413M22 from 4, complete sequence Length = 138302 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 ttcacttctttgtattccac 540 |||||||||||||||||||| Sbjct: 46985 ttcacttctttgtattccac 46966
>ref|NM_181564.2| Mus musculus desmoglein 4 (Dsg4), mRNA Length = 3478 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 cttcttcatccagatcgatt 433 |||||||||||||||||||| Sbjct: 1029 cttcttcatccagatcgatt 1010
>ref|XM_626253.1| Cryptosporidium parvum Iowa II secreted lipopolysaccharide sugar transferase like family 8 glycosyltransferase (cgd5_3260), partial mRNA Length = 516 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 atatgaaataactttttcat 106 |||||||||||||||||||| Sbjct: 159 atatgaaataactttttcat 178
>gb|AC020979.6| Homo sapiens chromosome 5 clone RP1_166C2, complete sequence Length = 82078 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 tttcatctttgtttttgttggttt 242 ||||||||||||||||||| |||| Sbjct: 55303 tttcatctttgtttttgtttgttt 55326
>ref|NM_001027124.2| Caenorhabditis elegans ELAV-Type RNA binding protein family member (etr-1) (etr-1) mRNA, complete cds Length = 1737 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 622 ctcatcaacagcaaatgctg 641 |||||||||||||||||||| Sbjct: 947 ctcatcaacagcaaatgctg 966
>ref|NM_061272.4| Caenorhabditis elegans ELAV-Type RNA binding protein family member (etr-1) (etr-1) mRNA, complete cds Length = 2191 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 622 ctcatcaacagcaaatgctg 641 |||||||||||||||||||| Sbjct: 1386 ctcatcaacagcaaatgctg 1405
>dbj|AK042002.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630051L19 product:unclassifiable, full insert sequence Length = 3638 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 219 tttcatctttgtttttgttggttttatt 246 |||||| |||||||||||| |||||||| Sbjct: 2983 tttcatttttgtttttgtttgttttatt 3010
>gb|AC149379.2| Phakopsora pachyrhizi clone JGIAFNA-5A5, complete sequence Length = 36566 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ttgtttttgttggttttatt 246 |||||||||||||||||||| Sbjct: 26059 ttgtttttgttggttttatt 26078
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 agagattcatacatagatat 90 |||||||||||||||||||| Sbjct: 16300434 agagattcatacatagatat 16300453
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 tccatttctttcaagagatt 365 |||||||||||||||||||| Sbjct: 6607986 tccatttctttcaagagatt 6607967
>dbj|AB060897.1| Macaca fascicularis brain cDNA clone:QtrA-13767, similar to human putative S1 RNA binding domain protein (PS1D), mRNA, NM_016505.2 Length = 1716 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 ttctgctgactttgcctctt 276 |||||||||||||||||||| Sbjct: 697 ttctgctgactttgcctctt 678
>gb|U53931.1|CEU53931 Caenorhabditis elegans elav-type ribonucleoprotein (etr-1) mRNA, complete cds Length = 2052 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 622 ctcatcaacagcaaatgctg 641 |||||||||||||||||||| Sbjct: 1247 ctcatcaacagcaaatgctg 1266
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0425F05 Length = 162858 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 tccatttctttcaagagatt 365 |||||||||||||||||||| Sbjct: 42112 tccatttctttcaagagatt 42093
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0690H04 Length = 137319 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 tccatttctttcaagagatt 365 |||||||||||||||||||| Sbjct: 124362 tccatttctttcaagagatt 124343
>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1344_B01 Length = 170912 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 agagattcatacatagatat 90 |||||||||||||||||||| Sbjct: 116950 agagattcatacatagatat 116969
>gb|AC110266.15| Mus musculus chromosome 1, clone RP23-319C1, complete sequence Length = 177482 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 ctttgtttttgttggtttta 244 |||||||||||||||||||| Sbjct: 169348 ctttgtttttgttggtttta 169367
>emb|BX005372.6| Zebrafish DNA sequence from clone DKEY-76K16, complete sequence Length = 199736 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 tatgaaataactttttcata 107 |||||||||||||||||||| Sbjct: 175630 tatgaaataactttttcata 175611
>gb|AC154100.7| Mus musculus chromosome 5, clone RP24-154F3, complete sequence Length = 200945 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ctttgtttttgttggtttta 244 |||||||||||||||||||| Sbjct: 79 ctttgtttttgttggtttta 60
>dbj|AK104849.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-A01, full insert sequence Length = 1063 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 tccatttctttcaagagatt 365 |||||||||||||||||||| Sbjct: 262 tccatttctttcaagagatt 281
>dbj|AK073517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040I03, full insert sequence Length = 2636 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 tccatttctttcaagagatt 365 |||||||||||||||||||| Sbjct: 1820 tccatttctttcaagagatt 1839
>dbj|AK066970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089B21, full insert sequence Length = 2977 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 tccatttctttcaagagatt 365 |||||||||||||||||||| Sbjct: 1772 tccatttctttcaagagatt 1791
>emb|AL929577.9| Mouse DNA sequence from clone RP23-455B1 on chromosome 4, complete sequence Length = 152910 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 219 tttcatctttgtttttgttggttttatt 246 |||||| |||||||||||| |||||||| Sbjct: 92964 tttcatttttgtttttgtttgttttatt 92937
>gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome Length = 1830138 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 560 tgcggtagaaatttgccaag 579 |||||||||||||||||||| Sbjct: 1063207 tgcggtagaaatttgccaag 1063188
>gb|BC109009.1| Mus musculus cDNA clone MGC:124398 IMAGE:40048538, complete cds Length = 3407 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 cttcttcatccagatcgatt 433 |||||||||||||||||||| Sbjct: 1029 cttcttcatccagatcgatt 1010
>gb|AC158219.4| Mus musculus chromosome 8, clone RP23-189N10, complete sequence Length = 215819 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 atgcaatgaatttcctttgaaata 47 |||||||||||||| ||||||||| Sbjct: 130359 atgcaatgaatttcatttgaaata 130382
>gb|AC166328.4| Mus musculus BAC clone RP23-31H5 from chromosome 5, complete sequence Length = 215189 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 tttgtttttgttggttttattcct 249 |||||||||||||||||| ||||| Sbjct: 24238 tttgtttttgttggtttttttcct 24261
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 225 ctttgtttttgttggttttattcctgaa 252 |||| ||||| ||||||||||||||||| Sbjct: 1791852 ctttattttttttggttttattcctgaa 1791825
>gb|M27212.1|DVUHYDFE D.vulgaris [Fe]-hydrogenase alpha and beta subunit genes, complete cds Length = 1964 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 tcttcttcatccagatcgat 432 |||||||||||||||||||| Sbjct: 310 tcttcttcatccagatcgat 329 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,509,198 Number of Sequences: 3902068 Number of extensions: 8509198 Number of successful extensions: 225041 Number of sequences better than 10.0: 103 Number of HSP's better than 10.0 without gapping: 103 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 224591 Number of HSP's gapped (non-prelim): 450 length of query: 667 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 644 effective length of database: 17,143,297,704 effective search space: 11040283721376 effective search space used: 11040283721376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
