>Y4844_ARATH (O49453) Protein At4g28440|
          Length = 153

 Score =  134 bits (336), Expect = 2e-31
 Identities = 64/104 (61%), Positives = 80/104 (76%), Gaps = 3/104 (2%)
 Frame = -1

Query: 506 SGHTLVAKVLSSKTVL---QKARATGGPGPAAKPTRIAECLIGDETGCVLFTARNDQVDV 336
           +GHTL  KV+ +  V+   +K R        ++P+RI ECLIGDETGC+LFTARNDQVD+
Sbjct: 33  TGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVDL 92

Query: 335 LKPGNTVIIRNAKIDMFKGSMRLAVDKWGRVEVTEPASFGVKED 204
           +KPG TVI+RN++IDMFKG+MRL VDKWGR+E T  ASF VKED
Sbjct: 93  MKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKED 136

>RPOC_CAUCR (Q9AAU1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1396

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -1

Query: 347  QVDVLKPGNTVIIRNAKIDM--FKGSMRLAVDKWGRVEVTEPASFGV 213
            +V++L+PG+T +I+   +D   F      A+ + GR  VT+P   G+
Sbjct: 1259 KVEILEPGDTGLIKGDHLDKPEFDKEQEKAIARGGRPAVTQPVLLGI 1305

>TEAD4_MOUSE (Q62296) Transcriptional enhancer factor TEF-3 (TEA domain family|
           member 4) (TEAD-4) (ETF-related factor 2) (ETFR-2)
           (TEF-1-related factor 1) (TEF-1-related factor FR-19)
           (RTEF-1)
          Length = 427

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 334 NTSTWSLRAVKRTQPVSSPMRHSAILVGLAAGPGPPVARAFWRTVL 471
           N +  S+ A+   Q VS+   HS +   LA GPG P    FW+  L
Sbjct: 117 NKALQSMAAMSSAQIVSATAFHSKM--ALARGPGYPAISGFWQGAL 160

>TEAD4_HUMAN (Q15561) Transcriptional enhancer factor TEF-3 (TEA domain family|
           member 4) (TEAD-4) (Transcription factor RTEF-1)
          Length = 427

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 349 SLRAVKRTQPVSSPMRHSAILVGLAAGPGPPVARAFWRTVL 471
           S+ A+   Q +S+   HS++   LA GPG P    FW+  L
Sbjct: 122 SMAAMSSAQIISATAFHSSM--ALARGPGRPAVSGFWQGAL 160

>RR2_PORPU (P51249) Chloroplast 30S ribosomal protein S2|
          Length = 241

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
 Frame = -1

Query: 413 TRIAECL-IGDETGCVLFTARNDQV-DVLKPGNTVIIRNAKIDMFKGSMRLAVDKWGRVE 240
           T I ECL +G  T C+L T  + ++ ++  P N   IR+ K+ + K +  +   K+G++E
Sbjct: 171 TAIQECLKLGIPTICILDTNCSPEIINIPIPANDDAIRSIKLIIGKIADAIYEGKYGQME 230

Query: 239 VTE 231
            TE
Sbjct: 231 PTE 233

>Y486_MYCPN (P75299) Hypothetical protein MPN486 (P02_orf147)|
          Length = 147

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 256 LSTASLIDPLNISIFALRIMTVLPGFNTSTWSLRAVKRTQPVSSPMRHSAILVGLAAGP 432
           LS+   +D    ++ +   + +LP    S WS+ AV    P+ +P R   +   L A P
Sbjct: 23  LSSGFWLDLFESTLTSGNELVLLPPTRYSYWSIMAVANPTPLKAPRRLDLVTKSLLAAP 81

>CARA_YERPS (Q66ER8) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 391

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = -1

Query: 503 GHTLVAKVLSSKTVLQKARATGGPGPAAKPTRIAECLIGDETGCVLFTARNDQVDVLKPG 324
           GH L+A    +KTV  K    GG  P              +  CV+ TA+N    V +  
Sbjct: 271 GHQLLALASGAKTVKMKFGHHGGNHPVKDL----------DASCVMITAQNHGFAVDETS 320

Query: 323 NTVIIRNAKIDMFKGSMR 270
               +R   + +F GS++
Sbjct: 321 LPSNLRTTHVSLFDGSLQ 338

>CARA_YERPE (Q8ZIL5) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 391

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = -1

Query: 503 GHTLVAKVLSSKTVLQKARATGGPGPAAKPTRIAECLIGDETGCVLFTARNDQVDVLKPG 324
           GH L+A    +KTV  K    GG  P              +  CV+ TA+N    V +  
Sbjct: 271 GHQLLALASGAKTVKMKFGHHGGNHPVKDL----------DASCVMITAQNHGFAVDETS 320

Query: 323 NTVIIRNAKIDMFKGSMR 270
               +R   + +F GS++
Sbjct: 321 LPSNLRTTHVSLFDGSLQ 338

>HISX1_RHOS4 (Q3J079) Histidinol dehydrogenase 1 (EC 1.1.1.23) (HDH 1)|
          Length = 434

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 285 EHINLCIADNDSV-ARLQHINLVVAGGEEDAAGLVADEALGD 407
           EH+ LC+AD +++ AR++H   +  GG          EA+GD
Sbjct: 327 EHLELCVADPEALAARIRHAGAIFLGG-------WTPEAIGD 361

>BGL2_SACFI (P22507) Beta-glucosidase 2 precursor (EC 3.2.1.21) (Gentiobiase)|
           (Cellobiase) (Beta-D-glucoside glucohydrolase)
          Length = 880

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
 Frame = +1

Query: 211 FTPKLAGS---VTSTRPHLSTASLIDPLNISIFALRIMTVLPGFNTSTWSLRAVKRTQPV 381
           FT K  G+   V  T P +     +DP N         T L     S   L+  K T P+
Sbjct: 380 FTTKEYGNEFFVDKTSPVVKVNHFVDPSN----DFTEDTALKVAEESIVLLKNEKNTLPI 435

Query: 382 SSPMRHSAILVGLAAGPGP 438
           S       +L G+AAGP P
Sbjct: 436 SPNKVRKLLLSGIAAGPDP 454


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,005,708
Number of Sequences: 219361
Number of extensions: 1161461
Number of successful extensions: 3468
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3465
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)