| Clone Name | rbags33l20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK067551.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108H01, full insert sequence Length = 868 Score = 353 bits (178), Expect = 4e-94 Identities = 307/350 (87%) Strand = Plus / Minus Query: 156 tcactcttcaacattgacaagttcatactccacaagtgaaagattattgtcctcctttac 215 |||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 474 tcacccttcaacattgacaagttcatactccacaagtgagagattgttatcctcctttac 415 Query: 216 accaaagcttgctggttcagttacttcaacacggccccatttgtcaacagcaagcctcat 275 || ||||| |||||||| ||||||| |||||||||||||| |||||||||||||| Sbjct: 414 gttgaaacttgccggttcagtcacttcaatgcggccccatttgtccacagcaagcctcat 355 Query: 276 tgaccctttgaacatatcaatctttgcattgcggataatgacagtgttgccaggcttcaa 335 ||| ||||||||||||||||| ||||||||||||||||| |||||| || ||| ||||| Sbjct: 354 tgatcctttgaacatatcaatttttgcattgcggataataacagtgctgtcagccttcat 295 Query: 336 cacatcaacctggtcgttgcgggcggtgaagaggacgcagccggtctcgtcgccgatgag 395 || |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 294 caggtcaacctgctcgttgcgggcggtgaacaggatgcagccggtctcgtcgccgatgag 235 Query: 396 gcactcggcgatcctggtgggcttggccgctgggccggggccgccagtggcgcgggcctt 455 ||||||||||||||| ||||| ||||| ||||| | || | | ||||||| |||| Sbjct: 234 gcactcggcgatcctcgtgggacgcgccgccgggcccgctcccgcggcggcgcggccctt 175 Query: 456 ctggaggacggtcttggagctgagcaccttagcgacgagcgtgtggccgc 505 ||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 174 ctggaccacggtcttggagctgagcaccttggcgacgagcgtgtggccgc 125
>ref|NM_191269.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 789 Score = 351 bits (177), Expect = 1e-93 Identities = 303/345 (87%) Strand = Plus / Minus Query: 161 cttcaacattgacaagttcatactccacaagtgaaagattattgtcctcctttacaccaa 220 |||||||||||||||||||||||||||||||||| ||||| || ||||||||||| | Sbjct: 418 cttcaacattgacaagttcatactccacaagtgagagattgttatcctcctttacgttga 359 Query: 221 agcttgctggttcagttacttcaacacggccccatttgtcaacagcaagcctcattgacc 280 | ||||| |||||||| ||||||| |||||||||||||| ||||||||||||||||| | Sbjct: 358 aacttgccggttcagtcacttcaatgcggccccatttgtccacagcaagcctcattgatc 299 Query: 281 ctttgaacatatcaatctttgcattgcggataatgacagtgttgccaggcttcaacacat 340 |||||||||||||||| ||||||||||||||||| |||||| || ||| ||||| || | Sbjct: 298 ctttgaacatatcaatttttgcattgcggataataacagtgctgtcagccttcatcaggt 239 Query: 341 caacctggtcgttgcgggcggtgaagaggacgcagccggtctcgtcgccgatgaggcact 400 ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 238 caacctgctcgttgcgggcggtgaacaggatgcagccggtctcgtcgccgatgaggcact 179 Query: 401 cggcgatcctggtgggcttggccgctgggccggggccgccagtggcgcgggccttctgga 460 |||||||||| ||||| ||||| ||||| | || | | ||||||| ||||||||| Sbjct: 178 cggcgatcctcgtgggacgcgccgccgggcccgctcccgcggcggcgcggcccttctgga 119 Query: 461 ggacggtcttggagctgagcaccttagcgacgagcgtgtggccgc 505 ||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 118 ccacggtcttggagctgagcaccttggcgacgagcgtgtggccgc 74
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 196 bits (99), Expect = 5e-47 Identities = 159/179 (88%) Strand = Plus / Plus Query: 156 tcactcttcaacattgacaagttcatactccacaagtgaaagattattgtcctcctttac 215 |||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 31632240 tcacccttcaacattgacaagttcatactccacaagtgagagattgttatcctcctttac 31632299 Query: 216 accaaagcttgctggttcagttacttcaacacggccccatttgtcaacagcaagcctcat 275 || ||||| |||||||| ||||||| |||||||||||||| |||||||||||||| Sbjct: 31632300 gttgaaacttgccggttcagtcacttcaatgcggccccatttgtccacagcaagcctcat 31632359 Query: 276 tgaccctttgaacatatcaatctttgcattgcggataatgacagtgttgccaggcttca 334 ||| ||||||||||||||||| ||||||||||||||||| |||||| || ||| ||||| Sbjct: 31632360 tgatcctttgaacatatcaatttttgcattgcggataataacagtgctgtcagccttca 31632418 Score = 163 bits (82), Expect = 7e-37 Identities = 142/162 (87%) Strand = Plus / Plus Query: 344 cctggtcgttgcgggcggtgaagaggacgcagccggtctcgtcgccgatgaggcactcgg 403 |||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct: 31633335 cctgctcgttgcgggcggtgaacaggatgcagccggtctcgtcgccgatgaggcactcgg 31633394 Query: 404 cgatcctggtgggcttggccgctgggccggggccgccagtggcgcgggccttctggagga 463 ||||||| ||||| ||||| ||||| | || | | ||||||| ||||||||| | Sbjct: 31633395 cgatcctcgtgggacgcgccgccgggcccgctcccgcggcggcgcggcccttctggacca 31633454 Query: 464 cggtcttggagctgagcaccttagcgacgagcgtgtggccgc 505 |||||||||||||||||||||| ||||||||||||||||||| Sbjct: 31633455 cggtcttggagctgagcaccttggcgacgagcgtgtggccgc 31633496 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 349 tcgttgcgggcggtgaagaggacgcagccggtctcgtcgccgatgaggcactcggcgat 407 ||||||||||||||||||| || | ||||||||||||||||||||||||||| ||||| Sbjct: 7669441 tcgttgcgggcggtgaagacgatggcgccggtctcgtcgccgatgaggcactccgcgat 7669383 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcattgcg 308 ||||| ||||| || |||||||||||||| ||||||||||| || || || |||||||| Sbjct: 7671352 ccccacttgtccaccgcaagcctcattgagcctttgaacatgtcgattttggcattgcg 7671294
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 196 bits (99), Expect = 5e-47 Identities = 159/179 (88%) Strand = Plus / Plus Query: 156 tcactcttcaacattgacaagttcatactccacaagtgaaagattattgtcctcctttac 215 |||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 45972 tcacccttcaacattgacaagttcatactccacaagtgagagattgttatcctcctttac 46031 Query: 216 accaaagcttgctggttcagttacttcaacacggccccatttgtcaacagcaagcctcat 275 || ||||| |||||||| ||||||| |||||||||||||| |||||||||||||| Sbjct: 46032 gttgaaacttgccggttcagtcacttcaatgcggccccatttgtccacagcaagcctcat 46091 Query: 276 tgaccctttgaacatatcaatctttgcattgcggataatgacagtgttgccaggcttca 334 ||| ||||||||||||||||| ||||||||||||||||| |||||| || ||| ||||| Sbjct: 46092 tgatcctttgaacatatcaatttttgcattgcggataataacagtgctgtcagccttca 46150 Score = 163 bits (82), Expect = 7e-37 Identities = 142/162 (87%) Strand = Plus / Plus Query: 344 cctggtcgttgcgggcggtgaagaggacgcagccggtctcgtcgccgatgaggcactcgg 403 |||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct: 47067 cctgctcgttgcgggcggtgaacaggatgcagccggtctcgtcgccgatgaggcactcgg 47126 Query: 404 cgatcctggtgggcttggccgctgggccggggccgccagtggcgcgggccttctggagga 463 ||||||| ||||| ||||| ||||| | || | | ||||||| ||||||||| | Sbjct: 47127 cgatcctcgtgggacgcgccgccgggcccgctcccgcggcggcgcggcccttctggacca 47186 Query: 464 cggtcttggagctgagcaccttagcgacgagcgtgtggccgc 505 |||||||||||||||||||||| ||||||||||||||||||| Sbjct: 47187 cggtcttggagctgagcaccttggcgacgagcgtgtggccgc 47228
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435B05 Length = 150997 Score = 196 bits (99), Expect = 5e-47 Identities = 159/179 (88%) Strand = Plus / Plus Query: 156 tcactcttcaacattgacaagttcatactccacaagtgaaagattattgtcctcctttac 215 |||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 145263 tcacccttcaacattgacaagttcatactccacaagtgagagattgttatcctcctttac 145322 Query: 216 accaaagcttgctggttcagttacttcaacacggccccatttgtcaacagcaagcctcat 275 || ||||| |||||||| ||||||| |||||||||||||| |||||||||||||| Sbjct: 145323 gttgaaacttgccggttcagtcacttcaatgcggccccatttgtccacagcaagcctcat 145382 Query: 276 tgaccctttgaacatatcaatctttgcattgcggataatgacagtgttgccaggcttca 334 ||| ||||||||||||||||| ||||||||||||||||| |||||| || ||| ||||| Sbjct: 145383 tgatcctttgaacatatcaatttttgcattgcggataataacagtgctgtcagccttca 145441 Score = 163 bits (82), Expect = 7e-37 Identities = 142/162 (87%) Strand = Plus / Plus Query: 344 cctggtcgttgcgggcggtgaagaggacgcagccggtctcgtcgccgatgaggcactcgg 403 |||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct: 146358 cctgctcgttgcgggcggtgaacaggatgcagccggtctcgtcgccgatgaggcactcgg 146417 Query: 404 cgatcctggtgggcttggccgctgggccggggccgccagtggcgcgggccttctggagga 463 ||||||| ||||| ||||| ||||| | || | | ||||||| ||||||||| | Sbjct: 146418 cgatcctcgtgggacgcgccgccgggcccgctcccgcggcggcgcggcccttctggacca 146477 Query: 464 cggtcttggagctgagcaccttagcgacgagcgtgtggccgc 505 |||||||||||||||||||||| ||||||||||||||||||| Sbjct: 146478 cggtcttggagctgagcaccttggcgacgagcgtgtggccgc 146519
>dbj|AK071627.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107F06, full insert sequence Length = 1006 Score = 127 bits (64), Expect = 4e-26 Identities = 136/160 (85%) Strand = Plus / Minus Query: 247 cggccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcattg 306 ||||||||||||||||| || |||||||| | ||| |||||||| |||||||| |||||| Sbjct: 509 cggccccatttgtcaactgccagcctcatggtccccttgaacatgtcaatcttggcattg 450 Query: 307 cggataatgacagtgttgccaggcttcaacacatcaacctggtcgttgcgggcggtgaag 366 |||| ||||| ||| |||| ||||||| || ||||| || | |||||||||||||||| Sbjct: 449 cggaagatgaccgtggtgcctggcttcaccaagtcaacttgttggttgcgggcggtgaag 390 Query: 367 aggacgcagccggtctcgtcgccgatgaggcactcggcga 406 |||||| |||||| | |||||||| ||||||||| |||| Sbjct: 389 aggacggtgccggtgttgtcgccgacgaggcactcagcga 350
>dbj|AK067021.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090L10, full insert sequence Length = 902 Score = 127 bits (64), Expect = 4e-26 Identities = 136/160 (85%) Strand = Plus / Minus Query: 247 cggccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcattg 306 ||||||||||||||||| || |||||||| | ||| |||||||| |||||||| |||||| Sbjct: 474 cggccccatttgtcaactgccagcctcatggtccccttgaacatgtcaatcttggcattg 415 Query: 307 cggataatgacagtgttgccaggcttcaacacatcaacctggtcgttgcgggcggtgaag 366 |||| ||||| ||| |||| ||||||| || ||||| || | |||||||||||||||| Sbjct: 414 cggaagatgaccgtggtgcctggcttcaccaagtcaacttgttggttgcgggcggtgaag 355 Query: 367 aggacgcagccggtctcgtcgccgatgaggcactcggcga 406 |||||| |||||| | |||||||| ||||||||| |||| Sbjct: 354 aggacggtgccggtgttgtcgccgacgaggcactcagcga 315
>ref|NM_188693.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 426 Score = 115 bits (58), Expect = 1e-22 Identities = 133/158 (84%) Strand = Plus / Minus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcattgcgg 309 ||||| ||||| || |||||||||||||| ||||||||||| || || || |||||||| Sbjct: 332 ccccacttgtccaccgcaagcctcattgagcctttgaacatgtcgattttggcattgcgc 273 Query: 310 ataatgacagtgttgccaggcttcaacacatcaacctggtcgttgcgggcggtgaagagg 369 || || || || ||||||||||||| ||||| || ||||||||||||||||||| | Sbjct: 272 atgatcactgtagcaccaggcttcaacaagtcaacttgctcgttgcgggcggtgaagacg 213 Query: 370 acgcagccggtctcgtcgccgatgaggcactcggcgat 407 | | ||||||||||||||||||||||||||| ||||| Sbjct: 212 atggcgccggtctcgtcgccgatgaggcactccgcgat 175
>dbj|AK073776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067D04, full insert sequence Length = 854 Score = 115 bits (58), Expect = 1e-22 Identities = 133/158 (84%) Strand = Plus / Minus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcattgcgg 309 ||||| ||||| || |||||||||||||| ||||||||||| || || || |||||||| Sbjct: 471 ccccacttgtccaccgcaagcctcattgagcctttgaacatgtcgattttggcattgcgc 412 Query: 310 ataatgacagtgttgccaggcttcaacacatcaacctggtcgttgcgggcggtgaagagg 369 || || || || ||||||||||||| ||||| || ||||||||||||||||||| | Sbjct: 411 atgatcactgtagcaccaggcttcaacaagtcaacttgctcgttgcgggcggtgaagacg 352 Query: 370 acgcagccggtctcgtcgccgatgaggcactcggcgat 407 | | ||||||||||||||||||||||||||| ||||| Sbjct: 351 atggcgccggtctcgtcgccgatgaggcactccgcgat 314
>gb|DQ122779.1| Medicago sativa clone C4 unknown mRNA Length = 557 Score = 93.7 bits (47), Expect = 5e-16 Identities = 65/71 (91%) Strand = Plus / Minus Query: 235 gttacttcaacacggccccatttgtcaacagcaagcctcattgaccctttgaacatatca 294 |||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||| ||| Sbjct: 416 gttacttcgacacggccccatttgtccacagcaagcctcattgatcctttaaacatgtca 357 Query: 295 atctttgcatt 305 || |||||||| Sbjct: 356 atttttgcatt 346
>dbj|AP006412.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT29C05, TM0301c, complete sequence Length = 48718 Score = 85.7 bits (43), Expect = 1e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 224 ttgctggttcagttacttcaacacggccccatttgtcaacagcaagcctcattgaccctt 283 |||| |||||||| ||||||| || ||||||||||||||||||||||| ||||| || | Sbjct: 25365 ttgcaggttcagtgacttcaatgcgcccccatttgtcaacagcaagccttattgatccct 25306 Query: 284 tgaacatatcaatctttgcattgcggataat 314 | ||||| |||||||||||||| || ||||| Sbjct: 25305 taaacatgtcaatctttgcattacgaataat 25275 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 349 tcgttgcgggcggtgaagaggacgcagccggtctcgtcgccgatgaggcactcggcgat 407 |||||||| |||||||||| |||| | |||| || || |||||||||||||||||||| Sbjct: 24418 tcgttgcgagcggtgaagatgacggtggcggtgtcatcaccgatgaggcactcggcgat 24360
>gb|AY104721.1| Zea mays PCO105901 mRNA sequence Length = 1144 Score = 83.8 bits (42), Expect = 5e-13 Identities = 130/158 (82%), Gaps = 1/158 (0%) Strand = Plus / Minus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcattgcgg 309 ||||||||||| || |||||||||||||| ||||||||||| || || || |||||||| Sbjct: 308 ccccatttgtccactgcaagcctcattgatcctttgaacatgtcgattttggcattgcgc 249 Query: 310 ataatgacagtgttgccaggcttcaacacatcaacctggtcgttgcgggcggtgaagagg 369 | || || ||| | ||||||| || |||||| |||||||||||||||||||| | | Sbjct: 248 aagatcaccgtggcctcgggcttcagcaaatcaacttggtcgttgcgggcggtgaatacg 189 Query: 370 acgcagccggtctcgtcgccgatgaggcactcggcgat 407 | | ||||||||| || |||| ||||||||||||||| Sbjct: 188 atgacgccggtctc-tctccgacgaggcactcggcgat 152
>ref|NM_128944.2| Arabidopsis thaliana unknown protein AT2G33845 mRNA, complete cds Length = 1312 Score = 79.8 bits (40), Expect = 8e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcatt 305 |||||||| |||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 538 ccccatttatcaacagcaagcctcattgatcccttgaacatatctatctttgcatt 483
>gb|BT000423.1| Arabidopsis thaliana expressed protein (At2g33845) mRNA, complete cds Length = 710 Score = 79.8 bits (40), Expect = 8e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcatt 305 |||||||| |||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 452 ccccatttatcaacagcaagcctcattgatcccttgaacatatctatctttgcatt 397
>gb|AY136315.1| Arabidopsis thaliana expressed protein (At2g33845) mRNA, complete cds Length = 875 Score = 79.8 bits (40), Expect = 8e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcatt 305 |||||||| |||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 530 ccccatttatcaacagcaagcctcattgatcccttgaacatatctatctttgcatt 475
>gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 map TEn5, complete sequence Length = 114144 Score = 79.8 bits (40), Expect = 8e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcatt 305 |||||||| |||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 71667 ccccatttatcaacagcaagcctcattgatcccttgaacatatctatctttgcatt 71612
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 79.8 bits (40), Expect = 8e-12 Identities = 76/88 (86%) Strand = Plus / Plus Query: 247 cggccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcattg 306 ||||||||||||||||| || |||||||| | ||| |||||||| |||||||| |||||| Sbjct: 218957 cggccccatttgtcaactgccagcctcatggtccccttgaacatgtcaatcttggcattg 219016 Query: 307 cggataatgacagtgttgccaggcttca 334 |||| ||||| ||| |||| ||||||| Sbjct: 219017 cggaagatgaccgtggtgcctggcttca 219044 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 351 gttgcgggcggtgaagaggacgcagccggtctcgtcgccgatgaggcactcggcga 406 |||||||||||||||||||||| |||||| | |||||||| ||||||||| |||| Sbjct: 219714 gttgcgggcggtgaagaggacggtgccggtgttgtcgccgacgaggcactcagcga 219769
>emb|BX821799.1|CNS0AA4L Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL75ZB03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 800 Score = 79.8 bits (40), Expect = 8e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcatt 305 |||||||| |||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 486 ccccatttatcaacagcaagcctcattgatcccttgaacatatctatctttgcatt 431
>emb|BX821573.1|CNS0A861 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL54ZG04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 886 Score = 79.8 bits (40), Expect = 8e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcatt 305 |||||||| |||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 531 ccccatttatcaacagcaagcctcattgatcccttgaacatatctatctttgcatt 476
>gb|AY087128.1| Arabidopsis thaliana clone 32001 mRNA, complete sequence Length = 884 Score = 79.8 bits (40), Expect = 8e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcatt 305 |||||||| |||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 538 ccccatttatcaacagcaagcctcattgatcccttgaacatatctatctttgcatt 483
>dbj|AP002842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0075G19 Length = 163558 Score = 79.8 bits (40), Expect = 8e-12 Identities = 76/88 (86%) Strand = Plus / Plus Query: 247 cggccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcattg 306 ||||||||||||||||| || |||||||| | ||| |||||||| |||||||| |||||| Sbjct: 83853 cggccccatttgtcaactgccagcctcatggtccccttgaacatgtcaatcttggcattg 83912 Query: 307 cggataatgacagtgttgccaggcttca 334 |||| ||||| ||| |||| ||||||| Sbjct: 83913 cggaagatgaccgtggtgcctggcttca 83940 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 351 gttgcgggcggtgaagaggacgcagccggtctcgtcgccgatgaggcactcggcga 406 |||||||||||||||||||||| |||||| | |||||||| ||||||||| |||| Sbjct: 84610 gttgcgggcggtgaagaggacggtgccggtgttgtcgccgacgaggcactcagcga 84665
>gb|AY108146.1| Zea mays PCO079748 mRNA sequence Length = 836 Score = 79.8 bits (40), Expect = 8e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 340 tcaacctggtcgttgcgggcggtgaagaggacgcagccggtctcgtcgccgatgaggcac 399 ||||| |||||||||||||||||||||| || | |||||||||||| |||| ||||||| Sbjct: 301 tcaacttggtcgttgcgggcggtgaagacgatggcgccggtctcgtccccgacgaggcac 242 Query: 400 tcggcgat 407 |||||||| Sbjct: 241 tcggcgat 234 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcattgcg 308 ||||| ||||| || |||||||||||||| ||||||||||| || || || |||||||| Sbjct: 391 ccccacttgtccactgcaagcctcattgatcctttgaacatgtctattttggcattgcg 333
>dbj|AP005621.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0681G01, complete sequence Length = 184118 Score = 79.8 bits (40), Expect = 8e-12 Identities = 76/88 (86%) Strand = Plus / Minus Query: 247 cggccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcattg 306 ||||||||||||||||| || |||||||| | ||| |||||||| |||||||| |||||| Sbjct: 1585 cggccccatttgtcaactgccagcctcatggtccccttgaacatgtcaatcttggcattg 1526 Query: 307 cggataatgacagtgttgccaggcttca 334 |||| ||||| ||| |||| ||||||| Sbjct: 1525 cggaagatgaccgtggtgcctggcttca 1498 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 351 gttgcgggcggtgaagaggacgcagccggtctcgtcgccgatgaggcactcggcga 406 |||||||||||||||||||||| |||||| | |||||||| ||||||||| |||| Sbjct: 828 gttgcgggcggtgaagaggacggtgccggtgttgtcgccgacgaggcactcagcga 773
>dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0086P08 Length = 145312 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 349 tcgttgcgggcggtgaagaggacgcagccggtctcgtcgccgatgaggcactcggcgat 407 ||||||||||||||||||| || | ||||||||||||||||||||||||||| ||||| Sbjct: 80017 tcgttgcgggcggtgaagacgatggcgccggtctcgtcgccgatgaggcactccgcgat 79959 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcattgcg 308 ||||| ||||| || |||||||||||||| ||||||||||| || || || |||||||| Sbjct: 81928 ccccacttgtccaccgcaagcctcattgagcctttgaacatgtcgattttggcattgcg 81870
>gb|AY104871.1| Zea mays PCO094431 mRNA sequence Length = 902 Score = 71.9 bits (36), Expect = 2e-09 Identities = 102/124 (82%) Strand = Plus / Minus Query: 283 ttgaacatatcaatctttgcattgcggataatgacagtgttgccaggcttcaacacatca 342 ||||||||||||||||| |||||||||| || || || | | |||||||| | ||| Sbjct: 483 ttgaacatatcaatcttggcattgcggaagatcactgttgtatctggcttcaaaaggtca 424 Query: 343 acctggtcgttgcgggcggtgaagaggacgcagccggtctcgtcgccgatgaggcactcg 402 ||||| |||||||||||||||| ||||||| |||||| ||| |||| |||||||||| Sbjct: 423 acctgttcgttgcgggcggtgacgaggacggtgccggtgctgtctccgacgaggcactcg 364 Query: 403 gcga 406 |||| Sbjct: 363 gcga 360
>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H06, complete sequence Length = 144457 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 349 tcgttgcgggcggtgaagaggacgcagccggtctcgtcgccgatgaggcactcggcgat 407 ||||||||||||||||||| || | |||||||||||||||| ||||||||||||||| Sbjct: 14282 tcgttgcgggcggtgaagacgatgaccccggtctcgtcgccgacgaggcactcggcgat 14340 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 244 acacggccccatttgtcaacagcaagcctcattgaccctttgaacatatc 293 ||||| ||||| ||||| ||||||||||||||||| || ||||||||||| Sbjct: 10311 acacgtccccacttgtcgacagcaagcctcattgagcccttgaacatatc 10360
>gb|AC137624.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0680F01, complete sequence Length = 156691 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 349 tcgttgcgggcggtgaagaggacgcagccggtctcgtcgccgatgaggcactcggcgat 407 ||||||||||||||||||| || | |||||||||||||||| ||||||||||||||| Sbjct: 90263 tcgttgcgggcggtgaagacgatgaccccggtctcgtcgccgacgaggcactcggcgat 90321 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 244 acacggccccatttgtcaacagcaagcctcattgaccctttgaacatatc 293 ||||| ||||| ||||| ||||||||||||||||| || ||||||||||| Sbjct: 86292 acacgtccccacttgtcgacagcaagcctcattgagcccttgaacatatc 86341
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 349 tcgttgcgggcggtgaagaggacgcagccggtctcgtcgccgatgaggcactcggcgat 407 ||||||||||||||||||| || | |||||||||||||||| ||||||||||||||| Sbjct: 8681840 tcgttgcgggcggtgaagacgatgaccccggtctcgtcgccgacgaggcactcggcgat 8681898 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 244 acacggccccatttgtcaacagcaagcctcattgaccctttgaacatatc 293 ||||| ||||| ||||| ||||||||||||||||| || ||||||||||| Sbjct: 8677869 acacgtccccacttgtcgacagcaagcctcattgagcccttgaacatatc 8677918 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcatt 305 ||||| ||||| || ||||||| ||| ||||| ||||||||||||||||| ||||| Sbjct: 40142 ccccacttgtccaccgcaagccgcatcgaccccttgaacatatcaatcttggcatt 40197
>dbj|AK073979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033077H09, full insert sequence Length = 679 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 349 tcgttgcgggcggtgaagaggacgcagccggtctcgtcgccgatgaggcactcggcgat 407 ||||||||||||||||||| || | |||||||||||||||| ||||||||||||||| Sbjct: 338 tcgttgcgggcggtgaagacgatgaccccggtctcgtcgccgacgaggcactcggcgat 280 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 244 acacggccccatttgtcaacagcaagcctcattgaccctttgaacatatc 293 ||||| ||||| ||||| ||||||||||||||||| || ||||||||||| Sbjct: 443 acacgtccccacttgtcgacagcaagcctcattgagcccttgaacatatc 394
>dbj|AK121085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064B05, full insert sequence Length = 756 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcatt 305 ||||| ||||| || ||||||| ||| ||||| ||||||||||||||||| ||||| Sbjct: 432 ccccacttgtccaccgcaagccgcatcgaccccttgaacatatcaatcttggcatt 377
>gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0036D10, complete sequence Length = 156772 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcatt 305 ||||| ||||| || ||||||| ||| ||||| ||||||||||||||||| ||||| Sbjct: 40142 ccccacttgtccaccgcaagccgcatcgaccccttgaacatatcaatcttggcatt 40197
>gb|AC152969.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0098I11, complete sequence Length = 122970 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcatt 305 ||||| ||||| || ||||||| ||| ||||| ||||||||||||||||| ||||| Sbjct: 49371 ccccacttgtccaccgcaagccgcatcgaccccttgaacatatcaatcttggcatt 49426
>gb|AC155157.1| Medicago truncatula chromosome 2 BAC clone mth2-53f22, complete sequence Length = 129201 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcattgcg 308 |||||||||||||| || ||||||||||| || || ||||| || ||||||| |||||| Sbjct: 63738 ccccatttgtcaacggccagcctcattgatcccttaaacatgtcgatctttgaattgcg 63796
>ref|NM_102223.2| Arabidopsis thaliana unknown protein AT1G23750 mRNA, complete cds Length = 838 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 238 acttcaacacggccccatttgtcaacagcaagcctcattgacccttt 284 ||||||||||| ||||| ||||| ||||| ||||||||||| ||||| Sbjct: 440 acttcaacacgaccccacttgtctacagctagcctcattgatccttt 394
>gb|BT015547.1| Arabidopsis thaliana At1g23750 mRNA sequence Length = 411 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 238 acttcaacacggccccatttgtcaacagcaagcctcattgacccttt 284 ||||||||||| ||||| ||||| ||||| ||||||||||| ||||| Sbjct: 329 acttcaacacgaccccacttgtctacagctagcctcattgatccttt 283
>gb|L47612.1|PIAEMB10R Picea glauca EMB10 mRNA Length = 380 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 250 ccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatctttgcattgcg 308 |||||||| ||||||||||| | |||||| ||||| ||||| || ||||| |||||||| Sbjct: 91 ccccatttatcaacagcaagtcgcattgaacctttaaacatgtcgatcttagcattgcg 33 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Minus Query: 160 tcttcaacattgacaagttcatactccacaagtgaaagattattgtcctcctt 212 |||| ||||||||| | |||||||||||||| || |||||||| |||||||| Sbjct: 181 tcttgaacattgaccaactcatactccacaagagagagattattctcctcctt 129
>gb|BT004437.1| Arabidopsis thaliana clone U20294 unknown protein (At1g23750) mRNA, complete cds Length = 445 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 238 acttcaacacggccccatttgtcaacagcaagcctcattgacccttt 284 ||||||||||| ||||| ||||| ||||| ||||||||||| ||||| Sbjct: 332 acttcaacacgaccccacttgtctacagctagcctcattgatccttt 286
>gb|AY085502.1| Arabidopsis thaliana clone 15450 mRNA, complete sequence Length = 817 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 238 acttcaacacggccccatttgtcaacagcaagcctcattgacccttt 284 ||||||||||| ||||| ||||| ||||| ||||||||||| ||||| Sbjct: 440 acttcaacacgaccccacttgtctacagctagcctcattgatccttt 394
>gb|BT002959.1| Arabidopsis thaliana clone RAFL15-05-L08 (R20294) unknown protein (At1g23750) mRNA, complete cds Length = 761 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 238 acttcaacacggccccatttgtcaacagcaagcctcattgacccttt 284 ||||||||||| ||||| ||||| ||||| ||||||||||| ||||| Sbjct: 416 acttcaacacgaccccacttgtctacagctagcctcattgatccttt 370
>gb|AC005990.1|F5O8 Arabidopsis thaliana chromosome 1 BAC F5O8 sequence, complete sequence Length = 99923 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 238 acttcaacacggccccatttgtcaacagcaagcctcattgacccttt 284 ||||||||||| ||||| ||||| ||||| ||||||||||| ||||| Sbjct: 75290 acttcaacacgaccccacttgtctacagctagcctcattgatccttt 75244
>ref|NM_179301.1| Arabidopsis thaliana unknown protein AT1G10590 transcript variant AT1G10590.2 mRNA, complete cds Length = 740 Score = 48.1 bits (24), Expect = 0.028 Identities = 57/68 (83%) Strand = Plus / Minus Query: 238 acttcaacacggccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatc 297 ||||||||||| |||||| | ||||| ||||||||||| || || ||| |||| || ||| Sbjct: 381 acttcaacacgtccccatctatcaactgcaagcctcatagaacccttgtacatgtcgatc 322 Query: 298 tttgcatt 305 || ||||| Sbjct: 321 ttcgcatt 314
>ref|NM_179302.1| Arabidopsis thaliana unknown protein AT1G10590 transcript variant AT1G10590.3 mRNA, complete cds Length = 788 Score = 48.1 bits (24), Expect = 0.028 Identities = 57/68 (83%) Strand = Plus / Minus Query: 238 acttcaacacggccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatc 297 ||||||||||| |||||| | ||||| ||||||||||| || || ||| |||| || ||| Sbjct: 429 acttcaacacgtccccatctatcaactgcaagcctcatagaacccttgtacatgtcgatc 370 Query: 298 tttgcatt 305 || ||||| Sbjct: 369 ttcgcatt 362
>ref|NM_100935.1| Arabidopsis thaliana unknown protein AT1G10590 transcript variant AT1G10590.1 mRNA, complete cds Length = 797 Score = 48.1 bits (24), Expect = 0.028 Identities = 57/68 (83%) Strand = Plus / Minus Query: 238 acttcaacacggccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatc 297 ||||||||||| |||||| | ||||| ||||||||||| || || ||| |||| || ||| Sbjct: 432 acttcaacacgtccccatctatcaactgcaagcctcatagaacccttgtacatgtcgatc 373 Query: 298 tttgcatt 305 || ||||| Sbjct: 372 ttcgcatt 365
>gb|AY113861.1| Arabidopsis thaliana unknown protein (At1g10590) mRNA, complete cds Length = 451 Score = 48.1 bits (24), Expect = 0.028 Identities = 57/68 (83%) Strand = Plus / Minus Query: 238 acttcaacacggccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatc 297 ||||||||||| |||||| | ||||| ||||||||||| || || ||| |||| || ||| Sbjct: 335 acttcaacacgtccccatctatcaactgcaagcctcatagaacccttgtacatgtcgatc 276 Query: 298 tttgcatt 305 || ||||| Sbjct: 275 ttcgcatt 268
>gb|AY045789.1| Arabidopsis thaliana unknown protein (At1g10590) mRNA, complete cds Length = 701 Score = 48.1 bits (24), Expect = 0.028 Identities = 57/68 (83%) Strand = Plus / Minus Query: 238 acttcaacacggccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatc 297 ||||||||||| |||||| | ||||| ||||||||||| || || ||| |||| || ||| Sbjct: 401 acttcaacacgtccccatctatcaactgcaagcctcatagaacccttgtacatgtcgatc 342 Query: 298 tttgcatt 305 || ||||| Sbjct: 341 ttcgcatt 334
>gb|AY037229.1| Arabidopsis thaliana At1g10590/F20B24_1 mRNA, complete cds Length = 766 Score = 48.1 bits (24), Expect = 0.028 Identities = 57/68 (83%) Strand = Plus / Minus Query: 238 acttcaacacggccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatc 297 ||||||||||| |||||| | ||||| ||||||||||| || || ||| |||| || ||| Sbjct: 407 acttcaacacgtccccatctatcaactgcaagcctcatagaacccttgtacatgtcgatc 348 Query: 298 tttgcatt 305 || ||||| Sbjct: 347 ttcgcatt 340
>emb|BX817845.1|CNS0AAU7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL44ZF12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 664 Score = 48.1 bits (24), Expect = 0.028 Identities = 57/68 (83%) Strand = Plus / Minus Query: 238 acttcaacacggccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatc 297 ||||||||||| |||||| | ||||| ||||||||||| || || ||| |||| || ||| Sbjct: 392 acttcaacacgtccccatctatcaactgcaagcctcatagaacccttgtacatgtcgatc 333 Query: 298 tttgcatt 305 || ||||| Sbjct: 332 ttcgcatt 325
>gb|AC009398.6|AC009398 Genomic sequence for Arabidopsis thaliana BAC F20B24 from chromosome I, complete sequence Length = 99416 Score = 48.1 bits (24), Expect = 0.028 Identities = 57/68 (83%) Strand = Plus / Plus Query: 238 acttcaacacggccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatc 297 ||||||||||| |||||| | ||||| ||||||||||| || || ||| |||| || ||| Sbjct: 2613 acttcaacacgtccccatctatcaactgcaagcctcatagaacccttgtacatgtcgatc 2672 Query: 298 tttgcatt 305 || ||||| Sbjct: 2673 ttcgcatt 2680
>gb|AY089189.1| Arabidopsis thaliana clone 7488 mRNA, complete sequence Length = 796 Score = 48.1 bits (24), Expect = 0.028 Identities = 57/68 (83%) Strand = Plus / Minus Query: 238 acttcaacacggccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatc 297 ||||||||||| |||||| | ||||| ||||||||||| || || ||| |||| || ||| Sbjct: 430 acttcaacacgtccccatctatcaactgcaagcctcatagaacccttgtacatgtcgatc 371 Query: 298 tttgcatt 305 || ||||| Sbjct: 370 ttcgcatt 363
>gb|AC007067.4|AC007067 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence Length = 89934 Score = 48.1 bits (24), Expect = 0.028 Identities = 57/68 (83%) Strand = Plus / Plus Query: 238 acttcaacacggccccatttgtcaacagcaagcctcattgaccctttgaacatatcaatc 297 ||||||||||| |||||| | ||||| ||||||||||| || || ||| |||| || ||| Sbjct: 83495 acttcaacacgtccccatctatcaactgcaagcctcatagaacccttgtacatgtcgatc 83554 Query: 298 tttgcatt 305 || ||||| Sbjct: 83555 ttcgcatt 83562
>ref|XM_956755.1| Neurospora crassa OR74A hypothetical protein (NCU05185.1) partial mRNA Length = 3327 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 348 gtcgttgcgggcggtgaagagg 369 |||||||||||||||||||||| Sbjct: 297 gtcgttgcgggcggtgaagagg 276
>ref|XM_324541.1| Neurospora crassa OR74A hypothetical protein (NCU05185.1) partial mRNA Length = 3327 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 348 gtcgttgcgggcggtgaagagg 369 |||||||||||||||||||||| Sbjct: 297 gtcgttgcgggcggtgaagagg 276
>gb|AC125085.4| Mus musculus BAC clone RP24-135G18 from chromosome 8, complete sequence Length = 168721 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 212 ttacaccaaagcttgctggttc 233 |||||||||||||||||||||| Sbjct: 124465 ttacaccaaagcttgctggttc 124486
>gb|AC114005.5| Mus musculus BAC clone RP23-179L18 from 8, complete sequence Length = 214732 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 212 ttacaccaaagcttgctggttc 233 |||||||||||||||||||||| Sbjct: 198464 ttacaccaaagcttgctggttc 198443
>emb|BX908810.1| Neurospora crassa DNA linkage group IV Cosmid contig G3C5 Length = 70104 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 348 gtcgttgcgggcggtgaagagg 369 |||||||||||||||||||||| Sbjct: 42185 gtcgttgcgggcggtgaagagg 42206
>gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome Length = 1469720 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 gctttggaaagcacttcttct 129 ||||||||||||||||||||| Sbjct: 440030 gctttggaaagcacttcttct 440010
>ref|NM_100260.1| Arabidopsis thaliana unknown protein AT1G03810 mRNA, complete cds Length = 432 Score = 42.1 bits (21), Expect = 1.7 Identities = 57/69 (82%) Strand = Plus / Minus Query: 339 atcaacctggtcgttgcgggcggtgaagaggacgcagccggtctcgtcgccgatgaggca 398 |||||| ||||||||||| |||||||| || | ||| || || ||||| || || ||||| Sbjct: 255 atcaacttggtcgttgcgagcggtgaaaagaatgcatccagtatcgtcaccaattaggca 196 Query: 399 ctcggcgat 407 ||| ||||| Sbjct: 195 ctcagcgat 187
>gb|AE017132.1| Yersinia pestis biovar Medievalis str. 91001 section 6 of 16 of the complete genome Length = 290155 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 278 accctttgaacatatcaatctttgc 302 ||||||||||||||||||| ||||| Sbjct: 236507 accctttgaacatatcaatatttgc 236531
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 278 accctttgaacatatcaatctttgc 302 ||||||||||||||||||| ||||| Sbjct: 2716925 accctttgaacatatcaatatttgc 2716949
>gb|AY274806.1| Bos taurus colony-stimulating factor-1 splice variant mRNA, partial cds; alternatively spliced Length = 2687 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 405 gatcctggtgggcttggccgctgggccggggcc 437 ||||||| ||| |||||||||||| |||||||| Sbjct: 2338 gatcctgttggacttggccgctggaccggggcc 2370
>gb|AY181987.1| Bos taurus macrophage colony-stimulating factor (CSF1) mRNA, partial cds; alternatively spliced Length = 3578 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 405 gatcctggtgggcttggccgctgggccggggcc 437 ||||||| ||| |||||||||||| |||||||| Sbjct: 3229 gatcctgttggacttggccgctggaccggggcc 3261
>emb|AL356579.24| Human DNA sequence from clone RP11-593A16 on chromosome 6 Contains the 5' end of the gene for KIAA1798 protein and a CpG island, complete sequence Length = 172816 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 aactcagaagatccatctttc 70 ||||||||||||||||||||| Sbjct: 87083 aactcagaagatccatctttc 87063
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 278 accctttgaacatatcaatctttgc 302 ||||||||||||||||||| ||||| Sbjct: 2081535 accctttgaacatatcaatatttgc 2081511
>emb|AJ414150.1| Yersinia pestis strain CO92 complete genome; segment 10/20 Length = 335050 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 278 accctttgaacatatcaatctttgc 302 ||||||||||||||||||| ||||| Sbjct: 168903 accctttgaacatatcaatatttgc 168879
>gb|AC154393.8| Mus musculus chromosome 1, clone RP23-64O1, complete sequence Length = 253733 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 263 cagcaagcctcattgaccctt 283 ||||||||||||||||||||| Sbjct: 69760 cagcaagcctcattgaccctt 69780
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 355 cgggcggtgaagaggacgcag 375 ||||||||||||||||||||| Sbjct: 532899 cgggcggtgaagaggacgcag 532919
>ref|XM_316939.2| Anopheles gambiae str. PEST ENSANGP00000019299 (ENSANGG00000016810), mRNA Length = 1146 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 372 gcagccggtctcgtcgccgat 392 ||||||||||||||||||||| Sbjct: 762 gcagccggtctcgtcgccgat 742
>ref|NM_118257.1| Arabidopsis thaliana ATP binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase/ sugar binding AT4G21370 mRNA, complete cds Length = 2535 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 aggcttcaacacatcaacct 346 |||||||||||||||||||| Sbjct: 1696 aggcttcaacacatcaacct 1715
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 353 tgcgggcggtgaagaggacgcagccggt 380 |||||||||||||| || |||||||||| Sbjct: 164122 tgcgggcggtgaagcggtcgcagccggt 164149
>emb|AL161555.2|ATCHRIV55 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55 Length = 194916 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 aggcttcaacacatcaacct 346 |||||||||||||||||||| Sbjct: 2858 aggcttcaacacatcaacct 2839
>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54 Length = 198715 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 aggcttcaacacatcaacct 346 |||||||||||||||||||| Sbjct: 196573 aggcttcaacacatcaacct 196554
>emb|AL031187.1|ATT6K22 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K22 (ESSAII project) Length = 89219 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 aggcttcaacacatcaacct 346 |||||||||||||||||||| Sbjct: 53296 aggcttcaacacatcaacct 53277
>emb|AL929418.14| Mouse DNA sequence from clone RP23-268M1 on chromosome 11 Contains a novel gene, complete sequence Length = 93419 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tgaactcagaagatccatct 67 |||||||||||||||||||| Sbjct: 92554 tgaactcagaagatccatct 92535
>emb|AL672175.7| Mouse DNA sequence from clone RP23-205A9 on chromosome 11 Contains the Nog gene for noggin, the 3' end of the gene for a novel protein (4932411E22Rik) and one CpG island, complete sequence Length = 212341 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tgaactcagaagatccatct 67 |||||||||||||||||||| Sbjct: 1135 tgaactcagaagatccatct 1116
>gb|AC015813.12| Homo sapiens, clone RP11-159D12, complete sequence Length = 181494 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 ggccgctgggccggggccgc 439 |||||||||||||||||||| Sbjct: 23151 ggccgctgggccggggccgc 23170
>gb|AC106746.2| Homo sapiens chromosome 5 clone RP11-149E17, complete sequence Length = 179868 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 gccaggcttcaacacatcaacctg 347 ||||||||||||||||||| |||| Sbjct: 68714 gccaggcttcaacacatcaccctg 68737
>gb|DQ397539.1| Brassica rapa haplotype 734 S locus receptor kinase gene, complete cds Length = 3789 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 322 ttgccaggcttcaacacatcaacctggt 349 ||||||||||||| ||||| |||||||| Sbjct: 2675 ttgccaggcttcagcacataaacctggt 2702
>gb|AC124905.3| Equus caballus clone CH241-184O19, complete sequence Length = 171209 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 caggcttcaacacatcaacc 345 |||||||||||||||||||| Sbjct: 133196 caggcttcaacacatcaacc 133215
>gb|AC008738.7| Homo sapiens chromosome 19 clone CTD-2540B15, complete sequence Length = 219821 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 aagttcatactccacaagtg 193 |||||||||||||||||||| Sbjct: 109500 aagttcatactccacaagtg 109481
>gb|AC004592.1|AC004592 Homo sapiens PAC clone RP1-244J5 from 5q31, complete sequence Length = 130513 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 324 gccaggcttcaacacatcaacctg 347 ||||||||||||||||||| |||| Sbjct: 95036 gccaggcttcaacacatcaccctg 95013
>gb|AC006550.2|F10O3 Arabidopsis thaliana chromosome 1 BAC F10O3 sequence, complete sequence Length = 78341 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 caaagcttgctggttcagtt 237 |||||||||||||||||||| Sbjct: 18947 caaagcttgctggttcagtt 18966
>gb|AY772636.1| Arabidopsis thaliana voucher CS6876 SRK (SRK) pseudogene, complete cds Length = 2619 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 aggcttcaacacatcaacct 346 |||||||||||||||||||| Sbjct: 2266 aggcttcaacacatcaacct 2285
>gb|AY772635.1| Arabidopsis thaliana voucher CS6780 SRK (SRK) pseudogene, complete cds Length = 2620 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 aggcttcaacacatcaacct 346 |||||||||||||||||||| Sbjct: 2267 aggcttcaacacatcaacct 2286
>gb|AY772634.1| Arabidopsis thaliana voucher CS6680 SRK (SRK) pseudogene, complete cds Length = 2623 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 aggcttcaacacatcaacct 346 |||||||||||||||||||| Sbjct: 2270 aggcttcaacacatcaacct 2289
>gb|AY772632.1| Arabidopsis thaliana voucher CS6622 SRK (SRK) pseudogene, complete cds Length = 2620 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 aggcttcaacacatcaacct 346 |||||||||||||||||||| Sbjct: 2267 aggcttcaacacatcaacct 2286
>gb|AY772631.1| Arabidopsis thaliana voucher CS6090 SRK (SRK) pseudogene, complete cds Length = 2622 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 aggcttcaacacatcaacct 346 |||||||||||||||||||| Sbjct: 2269 aggcttcaacacatcaacct 2288
>gb|AY772630.1| Arabidopsis thaliana voucher CS1640 SRK (SRK) pseudogene, complete cds Length = 2619 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 aggcttcaacacatcaacct 346 |||||||||||||||||||| Sbjct: 2266 aggcttcaacacatcaacct 2285
>gb|AY772628.1| Arabidopsis thaliana voucher CS1364 SRK (SRK) pseudogene, complete cds Length = 2622 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 aggcttcaacacatcaacct 346 |||||||||||||||||||| Sbjct: 2269 aggcttcaacacatcaacct 2288
>gb|AY772627.1| Arabidopsis thaliana voucher CS1316 SRK (SRK) pseudogene, complete cds Length = 2620 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 aggcttcaacacatcaacct 346 |||||||||||||||||||| Sbjct: 2267 aggcttcaacacatcaacct 2286
>gb|AY772626.1| Arabidopsis thaliana voucher CS1044 SRK (SRK) pseudogene, complete cds Length = 2619 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 aggcttcaacacatcaacct 346 |||||||||||||||||||| Sbjct: 2266 aggcttcaacacatcaacct 2285
>gb|AY772625.1| Arabidopsis thaliana voucher CS917 SRK (SRK) pseudogene, complete cds Length = 2623 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 aggcttcaacacatcaacct 346 |||||||||||||||||||| Sbjct: 2270 aggcttcaacacatcaacct 2289
>gb|AY772624.1| Arabidopsis thaliana voucher CS915 SRK (SRK) pseudogene, complete cds Length = 2620 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 aggcttcaacacatcaacct 346 |||||||||||||||||||| Sbjct: 2267 aggcttcaacacatcaacct 2286
>gb|AY772623.1| Arabidopsis thaliana voucher CS20 SRK (SRK) pseudogene, complete cds Length = 2623 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 aggcttcaacacatcaacct 346 |||||||||||||||||||| Sbjct: 2270 aggcttcaacacatcaacct 2289
>gb|DP000020.1| Equus caballus target 1 genomic scaffold Length = 1907055 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 caggcttcaacacatcaacc 345 |||||||||||||||||||| Sbjct: 1765840 caggcttcaacacatcaacc 1765859 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,034,903 Number of Sequences: 3902068 Number of extensions: 4034903 Number of successful extensions: 68311 Number of sequences better than 10.0: 94 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67961 Number of HSP's gapped (non-prelim): 340 length of query: 509 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 487 effective length of database: 17,147,199,772 effective search space: 8350686288964 effective search space used: 8350686288964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)