Clone Information

BLAST Search Result

Clone Name	rbaal2c19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_467899.1\| Oryza sativa (japonica cultivar-group), mRNA	127	4e-26
2	gb\|AY579411.1\| Oryza sativa (japonica cultivar-group) RING/C3HC4...	127	4e-26
3	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	127	4e-26
4	dbj\|AP004814.3\| Oryza sativa (japonica cultivar-group) genomic D...	127	4e-26
5	dbj\|AP004159.3\| Oryza sativa (japonica cultivar-group) genomic D...	127	4e-26
6	dbj\|AK067456.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	127	4e-26
7	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	101	2e-18
8	dbj\|AP005425.3\| Oryza sativa (japonica cultivar-group) genomic D...	101	2e-18
9	dbj\|AK108491.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	101	2e-18
10	ref\|XM_472662.1\| Oryza sativa (japonica cultivar-group), predic...	62	2e-06
11	emb\|AL606615.4\|OSJN00048 Oryza sativa genomic DNA, chromosome 4,...	62	2e-06
12	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	62	2e-06
13	dbj\|AP005114.3\| Oryza sativa (japonica cultivar-group) genomic D...	60	7e-06
14	ref\|XM_450948.1\| Oryza sativa (japonica cultivar-group), mRNA	52	0.002
15	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
16	dbj\|AP005399.3\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
17	ref\|XM_654760.1\| Aspergillus nidulans FGSC A4 4-aminobutyrate am...	44	0.44
18	emb\|X15647.1\|ANGATA Aspergillus nidulans gatA gene for gamma-ami...	44	0.44
19	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.44
20	emb\|BX000346.3\|CNS08CDC Oryza sativa chromosome 12, . BAC OSJNBb...	44	0.44
21	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	44	0.44
22	emb\|BX649218.2\|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F...	44	0.44
23	emb\|BX000560.1\|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa...	44	0.44
24	ref\|XM_470813.1\| Oryza sativa (japonica cultivar-group), mRNA	42	1.7
25	gb\|AY596790.1\| Pseudomonas aeruginosa PhaC2-like gene, complete ...	42	1.7
26	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	42	1.7
27	gb\|AC099323.6\| Oryza sativa chromosome 3 BAC OSJNBa0065F09 genom...	42	1.7
28	emb\|X66592.1\|PAPHAC1C2 Pseudomonas aeruginosa phaC1, phaC2 and p...	42	1.7
29	gb\|CP000230.1\| Rhodospirillum rubrum ATCC 11170, complete genome	42	1.7
30	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.7
31	gb\|AE004919.1\| Pseudomonas aeruginosa PAO1, section 480 of 529 o...	42	1.7
32	dbj\|AP006840.1\| Symbiobacterium thermophilum IAM 14863 DNA, comp...	42	1.7
33	gb\|AY541066.1\| Hordeum vulgare subsp. vulgare PISTILLATA-like pr...	40	6.8
34	ref\|XM_449913.1\| Candida glabrata CBS138 hypothetical protein (C...	40	6.8
35	gb\|AY163770.1\| Homo sapiens general transcription factor IIH, po...	40	6.8
36	emb\|CR380959.1\| Candida glabrata strain CBS138 chromosome M comp...	40	6.8
37	emb\|BX572608.1\| Rhodopseudomonas palustris CGA009 complete genom...	40	6.8
38	emb\|AL591985.1\|RME591985 Sinorhizobium meliloti 1021 complete pSymB	40	6.8
39	gb\|AC084117.6\| Homo sapiens chromosome 11, clone RP11-107C21, co...	40	6.8
40	gb\|AE012099.1\| Xanthomonas campestris pv. campestris str. ATCC 3...	40	6.8
41	gb\|CP000050.1\| Xanthomonas campestris pv. campestris str. 8004, ...	40	6.8
42	gb\|DQ058601.1\| Thermus thermophilus plasmid pTF62, complete sequ...	40	6.8
43	gb\|AE017282.2\| Methylococcus capsulatus str. Bath, complete genome	40	6.8
44	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	6.8
45	gb\|CP000159.1\| Salinibacter ruber DSM 13855, complete genome	40	6.8

>ref|XM_467899.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1735

 Score =  127 bits (64), Expect = 4e-26
 Identities = 82/88 (93%)
 Strand = Plus / Minus

                                                                        
Query: 381  cgctctgctccccggccgcgaccatctccctgcgcacgtgctccggcagccgcagcgtga 440
            ||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| 
Sbjct: 1015 cgctctgctcccccgccgcgaccatctccctgtgtacgtgctccggcagccgcagcgtgt 956

                                        
Query: 441  accgctccaggtcgcggtcgagccggac 468
            ||||||| ||||||| ||||||||||||
Sbjct: 955  accgctctaggtcgccgtcgagccggac 928



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 215  acggcggccacgcgcttccct 235
            |||||||||||||||||||||
Sbjct: 1241 acggcggccacgcgcttccct 1221

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>gb|AY579411.1| Oryza sativa (japonica cultivar-group) RING/C3HC4/PHD zinc
            finger-like protein mRNA, complete cds
          Length = 1670

 Score =  127 bits (64), Expect = 4e-26
 Identities = 82/88 (93%)
 Strand = Plus / Minus

                                                                        
Query: 381  cgctctgctccccggccgcgaccatctccctgcgcacgtgctccggcagccgcagcgtga 440
            ||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| 
Sbjct: 1002 cgctctgctcccccgccgcgaccatctccctgtgtacgtgctccggcagccgcagcgtgt 943

                                        
Query: 441  accgctccaggtcgcggtcgagccggac 468
            ||||||| ||||||| ||||||||||||
Sbjct: 942  accgctctaggtcgccgtcgagccggac 915



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 215  acggcggccacgcgcttccct 235
            |||||||||||||||||||||
Sbjct: 1228 acggcggccacgcgcttccct 1208

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  127 bits (64), Expect = 4e-26
 Identities = 82/88 (93%)
 Strand = Plus / Minus

                                                                            
Query: 381      cgctctgctccccggccgcgaccatctccctgcgcacgtgctccggcagccgcagcgtga 440
                ||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| 
Sbjct: 31987312 cgctctgctcccccgccgcgaccatctccctgtgtacgtgctccggcagccgcagcgtgt 31987253

                                            
Query: 441      accgctccaggtcgcggtcgagccggac 468
                ||||||| ||||||| ||||||||||||
Sbjct: 31987252 accgctctaggtcgccgtcgagccggac 31987225



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                                  
Query: 416      acgtgctccggcagccgcagcgtgaaccgctcca 449
                |||||||||||||||||||||| |||||||||||
Sbjct: 21942569 acgtgctccggcagccgcagcgcgaaccgctcca 21942602



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 215      acggcggccacgcgcttccct 235
                |||||||||||||||||||||
Sbjct: 31987538 acggcggccacgcgcttccct 31987518

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>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0471A11
          Length = 157740

 Score =  127 bits (64), Expect = 4e-26
 Identities = 82/88 (93%)
 Strand = Plus / Minus

                                                                          
Query: 381    cgctctgctccccggccgcgaccatctccctgcgcacgtgctccggcagccgcagcgtga 440
              ||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| 
Sbjct: 148313 cgctctgctcccccgccgcgaccatctccctgtgtacgtgctccggcagccgcagcgtgt 148254

                                          
Query: 441    accgctccaggtcgcggtcgagccggac 468
              ||||||| ||||||| ||||||||||||
Sbjct: 148253 accgctctaggtcgccgtcgagccggac 148226



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 215    acggcggccacgcgcttccct 235
              |||||||||||||||||||||
Sbjct: 148539 acggcggccacgcgcttccct 148519

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>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1175_B01
          Length = 96191

 Score =  127 bits (64), Expect = 4e-26
 Identities = 82/88 (93%)
 Strand = Plus / Minus

                                                                        
Query: 381  cgctctgctccccggccgcgaccatctccctgcgcacgtgctccggcagccgcagcgtga 440
            ||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| 
Sbjct: 7687 cgctctgctcccccgccgcgaccatctccctgtgtacgtgctccggcagccgcagcgtgt 7628

                                        
Query: 441  accgctccaggtcgcggtcgagccggac 468
            ||||||| ||||||| ||||||||||||
Sbjct: 7627 accgctctaggtcgccgtcgagccggac 7600



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 215  acggcggccacgcgcttccct 235
            |||||||||||||||||||||
Sbjct: 7913 acggcggccacgcgcttccct 7893

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>dbj|AK067456.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107I10, full
            insert sequence
          Length = 1735

 Score =  127 bits (64), Expect = 4e-26
 Identities = 82/88 (93%)
 Strand = Plus / Minus

                                                                        
Query: 381  cgctctgctccccggccgcgaccatctccctgcgcacgtgctccggcagccgcagcgtga 440
            ||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| 
Sbjct: 1015 cgctctgctcccccgccgcgaccatctccctgtgtacgtgctccggcagccgcagcgtgt 956

                                        
Query: 441  accgctccaggtcgcggtcgagccggac 468
            ||||||| ||||||| ||||||||||||
Sbjct: 955  accgctctaggtcgccgtcgagccggac 928



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 215  acggcggccacgcgcttccct 235
            |||||||||||||||||||||
Sbjct: 1241 acggcggccacgcgcttccct 1221

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  101 bits (51), Expect = 2e-18
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                           
Query: 393     cggccgcgaccatctccctgcgcacgtgctccggcagccgcagcgtgaaccgctccaggt 452
               |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 6070405 cggcggcgaccatctccctgcgcacgtgctccggcaggcgcagcgtgaaccgctcgaggt 6070464

                  
Query: 453     cgc 455
               |||
Sbjct: 6070465 cgc 6070467

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>dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0644A02
          Length = 144954

 Score =  101 bits (51), Expect = 2e-18
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                         
Query: 393   cggccgcgaccatctccctgcgcacgtgctccggcagccgcagcgtgaaccgctccaggt 452
             |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 74904 cggcggcgaccatctccctgcgcacgtgctccggcaggcgcagcgtgaaccgctcgaggt 74963

                
Query: 453   cgc 455
             |||
Sbjct: 74964 cgc 74966

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>dbj|AK108491.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G02, full
           insert sequence
          Length = 1700

 Score =  101 bits (51), Expect = 2e-18
 Identities = 60/63 (95%)
 Strand = Plus / Minus

                                                                       
Query: 393 cggccgcgaccatctccctgcgcacgtgctccggcagccgcagcgtgaaccgctccaggt 452
           |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 953 cggcggcgaccatctccctgcgcacgtgctccggcaggcgcagcgtgaaccgctcgaggt 894

              
Query: 453 cgc 455
           |||
Sbjct: 893 cgc 891

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>ref|XM_472662.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1164

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 413 cgcacgtgctccggcagccgcagcgtgaaccgctc 447
           |||||||||| ||||||||||||||||||||||||
Sbjct: 860 cgcacgtgctgcggcagccgcagcgtgaaccgctc 826

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>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14,
             complete sequence
          Length = 175698

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                
Query: 413   cgcacgtgctccggcagccgcagcgtgaaccgctc 447
             |||||||||| ||||||||||||||||||||||||
Sbjct: 14781 cgcacgtgctgcggcagccgcagcgtgaaccgctc 14747

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                   
Query: 413      cgcacgtgctccggcagccgcagcgtgaaccgctc 447
                |||||||||| ||||||||||||||||||||||||
Sbjct: 22411026 cgcacgtgctgcggcagccgcagcgtgaaccgctc 22410992

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>dbj|AP005114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0689H05
          Length = 135803

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                                
Query: 416    acgtgctccggcagccgcagcgtgaaccgctcca 449
              |||||||||||||||||||||| |||||||||||
Sbjct: 125854 acgtgctccggcagccgcagcgcgaaccgctcca 125887

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>ref|XM_450948.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1179

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 414 gcacgtgctccggcagccgcagcgtgaacc 443
           |||||||||| |||||||||||||||||||
Sbjct: 871 gcacgtgctcgggcagccgcagcgtgaacc 842

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                              
Query: 414      gcacgtgctccggcagccgcagcgtgaacc 443
                |||||||||| |||||||||||||||||||
Sbjct: 17736466 gcacgtgctcgggcagccgcagcgtgaacc 17736495

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>dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0676H02
          Length = 144252

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 414   gcacgtgctccggcagccgcagcgtgaacc 443
             |||||||||| |||||||||||||||||||
Sbjct: 45100 gcacgtgctcgggcagccgcagcgtgaacc 45129

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>ref|XM_654760.1| Aspergillus nidulans FGSC A4 4-aminobutyrate aminotransferase
           (AN2248.2), mRNA
          Length = 1497

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 241 cctcgtcgacgatgaagaggac 262
           ||||||||||||||||||||||
Sbjct: 979 cctcgtcgacgatgaagaggac 958

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>emb|X15647.1|ANGATA Aspergillus nidulans gatA gene for gamma-amino-n-butyrate
            transaminase
          Length = 2612

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 241  cctcgtcgacgatgaagaggac 262
            ||||||||||||||||||||||
Sbjct: 1556 cctcgtcgacgatgaagaggac 1535

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 411     tgcgcacgtgctccggcagccgcagcgtgaaccg 444
               |||| ||||| | |||||||||||||||||||||
Sbjct: 5538957 tgcgtacgtgttgcggcagccgcagcgtgaaccg 5538924

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>emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC OSJNBb0084C05 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 117585

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 411   tgcgcacgtgctccggcagccgcagcgtgaaccg 444
             |||| ||||| | |||||||||||||||||||||
Sbjct: 59182 tgcgtacgtgttgcggcagccgcagcgtgaaccg 59215

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 411     tgcgcacgtgctccggcagccgcagcgtgaaccg 444
               |||| ||||| | |||||||||||||||||||||
Sbjct: 5538946 tgcgtacgtgttgcggcagccgcagcgtgaaccg 5538913

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>emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F04 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 160556

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 411   tgcgcacgtgctccggcagccgcagcgtgaaccg 444
             |||| ||||| | |||||||||||||||||||||
Sbjct: 91762 tgcgtacgtgttgcggcagccgcagcgtgaaccg 91729

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>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 139684

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 411    tgcgcacgtgctccggcagccgcagcgtgaaccg 444
              |||| ||||| | |||||||||||||||||||||
Sbjct: 113928 tgcgtacgtgttgcggcagccgcagcgtgaaccg 113961

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>ref|XM_470813.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1254

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 421 ctccggcagccgcagcgtgaaccgctcca 449
           ||||||||||||||||||| |||| ||||
Sbjct: 792 ctccggcagccgcagcgtgtaccggtcca 764

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>gb|AY596790.1| Pseudomonas aeruginosa PhaC2-like gene, complete sequence
          Length = 1684

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 423 ccggcagccgcagcgtgaacc 443
           |||||||||||||||||||||
Sbjct: 855 ccggcagccgcagcgtgaacc 875

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 421      ctccggcagccgcagcgtgaaccgctcca 449
                ||||||||||||||||||| |||| ||||
Sbjct: 15507200 ctccggcagccgcagcgtgtaccggtcca 15507172

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>gb|AC099323.6| Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence,
            complete sequence
          Length = 115079

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 421  ctccggcagccgcagcgtgaaccgctcca 449
            ||||||||||||||||||| |||| ||||
Sbjct: 6751 ctccggcagccgcagcgtgtaccggtcca 6723

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>emb|X66592.1|PAPHAC1C2 Pseudomonas aeruginosa phaC1, phaC2 and phaD genes
          Length = 7311

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 423  ccggcagccgcagcgtgaacc 443
            |||||||||||||||||||||
Sbjct: 5112 ccggcagccgcagcgtgaacc 5132

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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 145     gtccttgtccacatcgaccgccacagagccgac 177
               |||||| |||||||||||| ||||| |||||||
Sbjct: 2854575 gtccttttccacatcgaccaccacatagccgac 2854607

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 421      ctccggcagccgcagcgtgaaccgctcca 449
                ||||||||||||||||||| |||| ||||
Sbjct: 15501734 ctccggcagccgcagcgtgtaccggtcca 15501706

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>gb|AE004919.1| Pseudomonas aeruginosa PAO1, section 480 of 529 of the complete
            genome
          Length = 11267

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 423  ccggcagccgcagcgtgaacc 443
            |||||||||||||||||||||
Sbjct: 4714 ccggcagccgcagcgtgaacc 4734

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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 389    tccccggccgcgaccatctcc 409
              |||||||||||||||||||||
Sbjct: 775773 tccccggccgcgaccatctcc 775753

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>gb|AY541066.1| Hordeum vulgare subsp. vulgare PISTILLATA-like protein mRNA,
           complete cds
          Length = 965

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 256 agaggacacctctcctccct 275
           ||||||||||||||||||||
Sbjct: 42  agaggacacctctcctccct 23

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>ref|XM_449913.1| Candida glabrata CBS138 hypothetical protein (CAGL0M13101g) partial
           mRNA
          Length = 1026

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 347 ggccatctgccggctctctg 366
           ||||||||||||||||||||
Sbjct: 269 ggccatctgccggctctctg 250

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>gb|AY163770.1| Homo sapiens general transcription factor IIH, polypeptide 1, 62kDa
             (GTF2H1) gene, complete cds
          Length = 45874

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 37    tgagttaatagtacagacagactc 60
             ||||||| ||||||||||||||||
Sbjct: 18347 tgagttagtagtacagacagactc 18324

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>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence
          Length = 1400893

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 347     ggccatctgccggctctctg 366
               ||||||||||||||||||||
Sbjct: 1286829 ggccatctgccggctctctg 1286810

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>emb|BX572608.1| Rhodopseudomonas palustris CGA009 complete genome; segment 16/16
          Length = 227214

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 420    gctccggcagccgcagcgtgaaccgctc 447
              ||||||||||||||| ||||||| ||||
Sbjct: 119286 gctccggcagccgcatcgtgaacggctc 119313

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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    ctcgtcgacgatgaagagga 261
              ||||||||||||||||||||
Sbjct: 951842 ctcgtcgacgatgaagagga 951823

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>gb|AC084117.6| Homo sapiens chromosome 11, clone RP11-107C21, complete sequence
          Length = 166973

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 37    tgagttaatagtacagacagactc 60
             ||||||| ||||||||||||||||
Sbjct: 48257 tgagttagtagtacagacagactc 48234

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>gb|AE012099.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 7
           of 460 of the complete genome
          Length = 10647

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 194 ccgccgcgttcgacgaaatg 213
           ||||||||||||||||||||
Sbjct: 485 ccgccgcgttcgacgaaatg 504

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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   ccgccgcgttcgacgaaatg 213
             ||||||||||||||||||||
Sbjct: 65332 ccgccgcgttcgacgaaatg 65351

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>gb|DQ058601.1| Thermus thermophilus plasmid pTF62, complete sequence
          Length = 10402

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 268  tcctccctcggagctctccg 287
            ||||||||||||||||||||
Sbjct: 4442 tcctccctcggagctctccg 4423

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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 246     tcgacgatgaagaggacacc 265
               ||||||||||||||||||||
Sbjct: 2110182 tcgacgatgaagaggacacc 2110201

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 203     tcgacgaaatgcacggcggc 222
               ||||||||||||||||||||
Sbjct: 5053016 tcgacgaaatgcacggcggc 5052997



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 387     gctccccggccgcgaccatc 406
               ||||||||||||||||||||
Sbjct: 2920454 gctccccggccgcgaccatc 2920435

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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 436     cgtgaaccgctccaggtcgcggtc 459
               ||||||||||||| ||||||||||
Sbjct: 3159822 cgtgaaccgctcccggtcgcggtc 3159845


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,907,320
Number of Sequences: 3902068
Number of extensions: 2907320
Number of successful extensions: 56281
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55345
Number of HSP's gapped (non-prelim): 936
length of query: 502
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 480
effective length of database: 17,147,199,772
effective search space: 8230655890560
effective search space used: 8230655890560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result