>RPOA_MESVI (Q9MUV0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 316

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 176 NPSNLCHY*YNTIYNTFEMDSYRINAITTENL-LKTQNYRCLLCPHCHTDNALHFSYTNE 352
           NP + C   Y+T  N F  +S +IN I  E L L  + Y CL     HT + L  +Y+ E
Sbjct: 226 NPLHHCSSEYSTNKNDFSTES-KINDILVEELELSVRAYNCLKRAQIHTISDL-LAYSQE 283

Query: 353 YLYQL 367
            L ++
Sbjct: 284 DLLEI 288

>YK55_YEAST (P36155) Hypothetical 36.1 kDa protein in SIS2-MTD1 intergenic|
           region
          Length = 307

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = +2

Query: 128 IVSILSFLQQDSRTELNPSNLCHY*YNTIYNTFEMDSYRINAITTENLLKTQNYRCLLCP 307
           I+S  + +  D+ T  N   + ++     ++ F   S  I+A  T  LLK + ++ L  P
Sbjct: 8   IISYQNIMLLDNMTNYNKPAIDYF-----HHEFNDASLEISASWTL-LLKMRKHKLLRLP 61

Query: 308 HCHTDNALHFSYTNEYLYQLHQ---KRVSLGH 394
            C +++ L +   N YL +LH    +R S+ H
Sbjct: 62  SCSSEDVLDY---NMYLVRLHHCLWRRWSINH 90

>CATV_NPVHZ (Q8V5U0) Viral cathepsin (EC 3.4.22.50) (V-cath) (Cysteine|
           proteinase) (CP)
          Length = 367

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +2

Query: 71  STTKTLAKPMPVSEALLSEI-VSILSFLQQDSRTELNPSNLCHY*YNTIYNTFEMDSYRI 247
           S+   L+ P+PV    L +  +    FLQQ +++  +P       Y   YN F+ +  +I
Sbjct: 34  SSPPPLSSPVPVLYYNLDQSEIYFKHFLQQYNKSYDDPKE-----YQYRYNVFKDNLNKI 88

Query: 248 NAITTENLLKTQN 286
           N+   ENLL  +N
Sbjct: 89  NSQNRENLLNNKN 101


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,954,321
Number of Sequences: 219361
Number of extensions: 1844004
Number of successful extensions: 4905
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4904
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)