ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal2c18 |
|---|---|
| Clone Library Name | barley_pub |
>Y005_SYNY3 (Q55680) Hypothetical protein sll0005| Length = 681 Score = 81.6 bits (200), Expect = 2e-15 Identities = 59/184 (32%), Positives = 89/184 (48%), Gaps = 8/184 (4%) Frame = -3 Query: 741 VLAASYPYFAKRLLTDPNPYLRDALIELLFKDEKFRWNRLENLLVQGRQDREFVAKDALQ 562 VL+ +YPY AKRLLTD + LR +L ELLFK+ FRWNRLENLL + F L Sbjct: 468 VLSKAYPYIAKRLLTDQSEELRTSLKELLFKEGSFRWNRLENLLRNAKNSPGFDFDYVLN 527 Query: 561 PVLKLLLGPDGENLRVLVVKEAVRVTEAI---TFGTLIGSYNAAPEFLKPLISNGNPAGP 391 + LL G+ +R +V E V + + T+ + + FL L + A Sbjct: 528 EATEFLLSDRGQFIRDRLVAELVNSIDQLGRNTWQQVSHNIQERISFLGDLGNGNGKAHQ 587 Query: 390 FKISDVERE----QMLELRDTVLRIWGLLRSSDTFDPSLLQPIV-QVLQEREARVFGSRI 226 K V + Q E + +W +L+ + FDP P++ Q++ +R G ++ Sbjct: 588 TKTIKVVPQPAIAQQEETWQHLQNLWQILKETPGFDPLKFVPVLSQIIVNPTSRRMGQQV 647 Query: 225 AGGV 214 A G+ Sbjct: 648 AEGL 651
>Y1919_SYNY3 (P73121) Hypothetical protein slr1919| Length = 566 Score = 64.7 bits (156), Expect = 3e-10 Identities = 33/75 (44%), Positives = 46/75 (61%) Frame = -3 Query: 741 VLAASYPYFAKRLLTDPNPYLRDALIELLFKDEKFRWNRLENLLVQGRQDREFVAKDALQ 562 ++ +YPY A+RLLT +P LR LI++LFK+ KF+W RLEN+L R D +F Q Sbjct: 435 IVEVAYPYVARRLLTGESPQLRRQLIDVLFKNGKFQWQRLENMLSIARSDTKFDLLPTAQ 494 Query: 561 PVLKLLLGPDGENLR 517 L+ L +G LR Sbjct: 495 LGLQFLFSEEGLYLR 509
>AROB_CAUCR (Q9A434) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 370 Score = 32.7 bits (73), Expect = 1.2 Identities = 21/55 (38%), Positives = 30/55 (54%) Frame = -3 Query: 693 PNPYLRDALIELLFKDEKFRWNRLENLLVQGRQDREFVAKDALQPVLKLLLGPDG 529 P P+ DALI +D+K + +L +L +G D FVAKD + LK L +G Sbjct: 315 PEPFSADALIAHCGQDKKAQGGKLTFVLARGIGD-AFVAKDVDRAALKAFLVEEG 368
>IF3_STAAW (P65141) Translation initiation factor IF-3| Length = 175 Score = 32.3 bits (72), Expect = 1.6 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -3 Query: 582 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 421 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 420 LISNGNPAGPFKISDVEREQMLELRDTVLRI 328 ++ G FK ++E+ ++ + ++ + Sbjct: 59 PVARIMDYGKFKFEQQKKEKEMKKKQKIINV 89
>IF3_STAAS (Q6G8P5) Translation initiation factor IF-3| Length = 175 Score = 32.3 bits (72), Expect = 1.6 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -3 Query: 582 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 421 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 420 LISNGNPAGPFKISDVEREQMLELRDTVLRI 328 ++ G FK ++E+ ++ + ++ + Sbjct: 59 PVARIMDYGKFKFEQQKKEKEMKKKQKIINV 89
>IF3_STAAN (P65140) Translation initiation factor IF-3| Length = 175 Score = 32.3 bits (72), Expect = 1.6 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -3 Query: 582 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 421 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 420 LISNGNPAGPFKISDVEREQMLELRDTVLRI 328 ++ G FK ++E+ ++ + ++ + Sbjct: 59 PVARIMDYGKFKFEQQKKEKEMKKKQKIINV 89
>IF3_STAAM (P65139) Translation initiation factor IF-3| Length = 175 Score = 32.3 bits (72), Expect = 1.6 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -3 Query: 582 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 421 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 420 LISNGNPAGPFKISDVEREQMLELRDTVLRI 328 ++ G FK ++E+ ++ + ++ + Sbjct: 59 PVARIMDYGKFKFEQQKKEKEMKKKQKIINV 89
>IF3_STAAC (Q5HF92) Translation initiation factor IF-3| Length = 175 Score = 32.3 bits (72), Expect = 1.6 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -3 Query: 582 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 421 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 420 LISNGNPAGPFKISDVEREQMLELRDTVLRI 328 ++ G FK ++E+ ++ + ++ + Sbjct: 59 PVARIMDYGKFKFEQQKKEKEMKKKQKIINV 89
>IF3_STAES (Q8CS75) Translation initiation factor IF-3| Length = 175 Score = 32.0 bits (71), Expect = 2.1 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -3 Query: 582 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 421 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINEKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 420 LISNGNPAGPFKISDVEREQMLELRDTVLRI 328 ++ G +K ++E+ ++ + V+ + Sbjct: 59 PVARIMDYGKYKFEQQKKEKEMKKKQKVINV 89
>IF3_STAEQ (Q5HNM3) Translation initiation factor IF-3| Length = 175 Score = 32.0 bits (71), Expect = 2.1 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -3 Query: 582 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 421 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINEKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 420 LISNGNPAGPFKISDVEREQMLELRDTVLRI 328 ++ G +K ++E+ ++ + V+ + Sbjct: 59 PVARIMDYGKYKFEQQKKEKEMKKKQKVINV 89
>PYRG_CORGL (Q8NQL7) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 554 Score = 31.6 bits (70), Expect = 2.7 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -3 Query: 312 SSDTFDPSLLQPIVQVLQEREARVFGSRIAGG 217 SS FDP+ QP++ ++E++A V G GG Sbjct: 414 SSTEFDPAATQPVIATMEEQKAAVSGEADLGG 445
>TRMD_MYCPU (Q98Q98) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)| (M1G-methyltransferase) (tRNA [GM37] methyltransferase) Length = 225 Score = 31.2 bits (69), Expect = 3.6 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 1/107 (0%) Frame = -3 Query: 555 LKLLLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKPLISNGNPAGPFKISD 376 LK+L+ P G+ + KE V+ ITF + G Y E + I G + ++ Sbjct: 78 LKILVSPQGKLFNQEIAKEIVKNHSEITF--VSGRYEGFDERILNYIDIELSIGDYILTG 135 Query: 375 VEREQMLELRDTVLRIW-GLLRSSDTFDPSLLQPIVQVLQEREARVF 238 E M+ + D+++R+W +++ + S ++ Q RVF Sbjct: 136 GELPSMV-MADSIIRLWEDVIKKESYENESFENNLLDYPQYTRPRVF 181
>KCND1_HUMAN (Q9NSA2) Potassium voltage-gated channel subfamily D member 1| (Voltage-gated potassium channel subunit Kv4.1) Length = 647 Score = 31.2 bits (69), Expect = 3.6 Identities = 18/34 (52%), Positives = 21/34 (61%) Frame = +2 Query: 158 GAGGILSSCCNKRAARRWETPPAIREPNTRASRS 259 G G +LSSCC +RA RR AIR N+ AS S Sbjct: 524 GPGSLLSSCCPRRAKRR-----AIRLANSTASVS 552
>IF3_THET2 (Q9ACJ8) Translation initiation factor IF-3| Length = 171 Score = 30.4 bits (67), Expect = 6.1 Identities = 12/52 (23%), Positives = 30/52 (57%) Frame = -3 Query: 591 REFVAKDALQPVLKLLLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAP 436 +E++ + ++ ++GPDG+ L ++ +EA+R+ + + ++ NA P Sbjct: 2 KEYLTNERIRAKQVRVVGPDGKQLGIMDTREALRLAQEMDLDLVLVGPNADP 53
>GLMS_IDILO (Q5QZH5) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 609 Score = 30.0 bits (66), Expect = 7.9 Identities = 17/51 (33%), Positives = 29/51 (56%) Frame = +3 Query: 216 HLLRYENQTHGLHALVAPVQLAAKDLDQRYQRISKDPIF*EQCLVAPTFVP 368 HL+ +E +THG L+A V+ A + L+ Y + D + E+ +VA + P Sbjct: 130 HLIHHERKTHG--DLLAAVKSAVRQLEGAYGTVVMDTQYPERLVVARSGSP 178
>RNF39_MACMU (Q5TM52) RING finger protein 39| Length = 420 Score = 30.0 bits (66), Expect = 7.9 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = +2 Query: 179 SCCNKRAARRWETPPAIREPNTRAS-RSCSTCTIGCKR 289 S C ARRW TPPA +T AS +C C + C R Sbjct: 106 SFCRACLARRWGTPPA---TDTEASPTACPCCGLPCPR 140 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 108,861,600 Number of Sequences: 219361 Number of extensions: 2324536 Number of successful extensions: 6639 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 6371 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6625 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7819576386 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
