ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2c18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK101553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 404 e-109
2dbj|AK059093.1| Oryza sativa (japonica cultivar-group) cDNA clon... 404 e-109
3gb|AC134346.3| Oryza sativa (japonica cultivar-group) chromosome... 254 4e-64
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 254 4e-64
5gb|BT012844.1| Lycopersicon esculentum clone 113914R, mRNA sequence 101 3e-18
6ref|NM_106608.2| Arabidopsis thaliana unknown protein AT1G79600 ... 52 0.003
7gb|AY141992.1| Arabidopsis thaliana At1g79600/F20B17_3 mRNA, com... 52 0.003
8gb|AY064971.1| Arabidopsis thaliana At1g79600/F20B17_3 mRNA, com... 52 0.003
9gb|AY039869.1| Arabidopsis thaliana At1g79600/F20B17_3 mRNA, com... 52 0.003
10emb|BX815640.1|CNS0AE07 Arabidopsis thaliana Full-length cDNA Co... 52 0.003
11gb|AC010793.3|AC010793 Genomic sequence for Arabidopsis thaliana... 52 0.003
12emb|AL133314.1|ATF12A12 Arabidopsis thaliana DNA chromosome 3, B... 46 0.17
13gb|AC133187.3| Mus musculus BAC clone RP23-324O10 from 1, comple... 44 0.65
14gb|AC153022.1| Mus musculus 6 BAC RP23-115M13 (Roswell Park Canc... 44 0.65
15gb|AC005213.1| Homo sapiens chromosome 5, BAC clone 84E9 (LBNL H... 42 2.6
16gb|AC107868.9| Mus musculus chromosome 17, clone RP23-405A17, co... 42 2.6
17gb|AC109204.21| Mus musculus chromosome 17, clone RP23-55J9, com... 42 2.6
18gb|AC113038.14| Mus musculus chromosome 17, clone RP23-228K17, c... 42 2.6
19emb|AL591069.5| Human DNA sequence from clone RP11-72O9 on chrom... 42 2.6
20emb|AL157397.14| Human DNA sequence from clone RP11-438P12 on ch... 42 2.6
21gb|AC020701.8| Homo sapiens BAC clone RP11-200K10 from 4, comple... 42 2.6
22gb|AC007916.10| Homo sapiens 12 BAC RP11-103D14 (Roswell Park Ca... 42 2.6
23gb|AC009233.3|AC009233 Homo sapiens BAC clone RP11-356K22 from Y... 42 2.6
24gb|AC005188.1|AC005188 Homo sapiens PAC clone RP1-17P5 from 5q31... 42 2.6
25gb|AC100406.7| Mus musculus chromosome 9, clone RP23-134M7, comp... 42 2.6
26emb|AL691472.6| Mouse DNA sequence from clone RP23-217C12 on chr... 42 2.6
27emb|AL663063.14| Mouse DNA sequence from clone RP23-407H16 on ch... 42 2.6

>dbj|AK101553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033049N14, full
            insert sequence
          Length = 1780

 Score =  404 bits (204), Expect = e-109
 Identities = 477/568 (83%)
 Strand = Plus / Minus

                                                                        
Query: 176  agcagctgttgcaacaagcgagctgcaaggcgctgggagacacctcctgcgatacgagaa 235
            |||||||| ||||||| ||| || || |||||||| |  ||||||||||| |  || || 
Sbjct: 1556 agcagctgctgcaacaggcgggccgcgaggcgctgcgtaacacctcctgcaacccgggag 1497

                                                                        
Query: 236  ccaaacacacgggcttcacgctcttgtagcacctgtacaattggctgcaaaagacttgga 295
            ||||  || ||||| ||  |||||||||||||||| |||||||| ||||| |   |||| 
Sbjct: 1496 ccaagaacgcgggcctctggctcttgtagcacctgcacaattggttgcaagatggttggg 1437

                                                                        
Query: 296  tcaaaggtatcagaggatctcaaaagaccccatattctgagaacagtgtctcgtagctcc 355
            ||||||  ||| |||||||||| ||| ||||||||||||| |||  |||| || ||||| 
Sbjct: 1436 tcaaagccatccgaggatctcagaaggccccatattctgaaaaccctgtcccgcagctca 1377

                                                                        
Query: 356  aacatttgttcccgctcaacatcacttatcttaaagggtccagctgggtttccattggat 415
            | |||||||||||  |||   || |||||||| || ||||| ||||| || ||| |||||
Sbjct: 1376 atcatttgttccctttcagtgtcgcttatcttgaacggtccggctggattaccactggat 1317

                                                                        
Query: 416  attaatggcttcaaaaattctggagctgcattgtatgaaccaatcagtgttccaaaggtg 475
            |||||||| || | |||||||||||||||||| || ||| ||||||| |||||||| |||
Sbjct: 1316 attaatggtttaagaaattctggagctgcattatacgaatcaatcagcgttccaaaagtg 1257

                                                                        
Query: 476  atggcttctgtgacacgaaccgcttctttcacaacaagcacccttaaattctccccatct 535
            ||||||||||||||||||||||||||||||||||| || || |  || | ||||||||| 
Sbjct: 1256 atggcttctgtgacacgaaccgcttctttcacaactaggactcgcaattcctccccatca 1197

                                                                        
Query: 536  ggaccaagtagaagtttcaaaaccggttgtagcgcatccttcgctacaaactctctatcc 595
            |||||||||||||| || | ||| ||||| |  ||||| || ||| ||||||||||||| 
Sbjct: 1196 ggaccaagtagaagctttagaactggttgcaaagcatcttttgctgcaaactctctatct 1137

                                                                        
Query: 596  tggcgtccttgaacaagaagattttcaagcctattccacctgaatttttcatccttgaat 655
            ||||  |||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 1136 tggctcccttgaacaagaagattttcaagcctattccatctgaattttccatccttgaat 1077

                                                                        
Query: 656  agcagctcaatcagagcatctctgagatatggattgggatctgtgagtaatcttttagca 715
            || |||||||| | ||||||||||||||||||||||||||| |||||||  ||||| |||
Sbjct: 1076 agtagctcaattaaagcatctctgagatatggattgggatcagtgagtagccttttcgca 1017

                                        
Query: 716  aagtaaggatatgaggcagcaagcacct 743
            |||||||| || |||||||| |||||||
Sbjct: 1016 aagtaagggtacgaggcagcgagcacct 989



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>dbj|AK059093.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-C02, full
            insert sequence
          Length = 1302

 Score =  404 bits (204), Expect = e-109
 Identities = 477/568 (83%)
 Strand = Plus / Minus

                                                                        
Query: 176  agcagctgttgcaacaagcgagctgcaaggcgctgggagacacctcctgcgatacgagaa 235
            |||||||| ||||||| ||| || || |||||||| |  ||||||||||| |  || || 
Sbjct: 1173 agcagctgctgcaacaggcgggccgcgaggcgctgcgtaacacctcctgcaacccgggag 1114

                                                                        
Query: 236  ccaaacacacgggcttcacgctcttgtagcacctgtacaattggctgcaaaagacttgga 295
            ||||  || ||||| ||  |||||||||||||||| |||||||| ||||| |   |||| 
Sbjct: 1113 ccaagaacgcgggcctctggctcttgtagcacctgcacaattggttgcaagatggttggg 1054

                                                                        
Query: 296  tcaaaggtatcagaggatctcaaaagaccccatattctgagaacagtgtctcgtagctcc 355
            ||||||  ||| |||||||||| ||| ||||||||||||| |||  |||| || ||||| 
Sbjct: 1053 tcaaagccatccgaggatctcagaaggccccatattctgaaaaccctgtcccgcagctca 994

                                                                        
Query: 356  aacatttgttcccgctcaacatcacttatcttaaagggtccagctgggtttccattggat 415
            | |||||||||||  |||   || |||||||| || ||||| ||||| || ||| |||||
Sbjct: 993  atcatttgttccctttcagtgtcgcttatcttgaacggtccggctggattaccactggat 934

                                                                        
Query: 416  attaatggcttcaaaaattctggagctgcattgtatgaaccaatcagtgttccaaaggtg 475
            |||||||| || | |||||||||||||||||| || ||| ||||||| |||||||| |||
Sbjct: 933  attaatggtttaagaaattctggagctgcattatacgaatcaatcagcgttccaaaagtg 874

                                                                        
Query: 476  atggcttctgtgacacgaaccgcttctttcacaacaagcacccttaaattctccccatct 535
            ||||||||||||||||||||||||||||||||||| || || |  || | ||||||||| 
Sbjct: 873  atggcttctgtgacacgaaccgcttctttcacaactaggactcgcaattcctccccatca 814

                                                                        
Query: 536  ggaccaagtagaagtttcaaaaccggttgtagcgcatccttcgctacaaactctctatcc 595
            |||||||||||||| || | ||| ||||| |  ||||| || ||| ||||||||||||| 
Sbjct: 813  ggaccaagtagaagctttagaactggttgcaaagcatcttttgctgcaaactctctatct 754

                                                                        
Query: 596  tggcgtccttgaacaagaagattttcaagcctattccacctgaatttttcatccttgaat 655
            ||||  |||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 753  tggctcccttgaacaagaagattttcaagcctattccatctgaattttccatccttgaat 694

                                                                        
Query: 656  agcagctcaatcagagcatctctgagatatggattgggatctgtgagtaatcttttagca 715
            || |||||||| | ||||||||||||||||||||||||||| |||||||  ||||| |||
Sbjct: 693  agtagctcaattaaagcatctctgagatatggattgggatcagtgagtagccttttcgca 634

                                        
Query: 716  aagtaaggatatgaggcagcaagcacct 743
            |||||||| || |||||||| |||||||
Sbjct: 633  aagtaagggtacgaggcagcgagcacct 606



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>gb|AC134346.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0018A03,
             complete sequence
          Length = 146278

 Score =  254 bits (128), Expect = 4e-64
 Identities = 308/368 (83%)
 Strand = Plus / Minus

                                                                         
Query: 266   acctgtacaattggctgcaaaagacttggatcaaaggtatcagaggatctcaaaagaccc 325
             ||||| |||||||| ||||| |   |||| ||||||  ||| |||||||||| ||| |||
Sbjct: 61803 acctgcacaattggttgcaagatggttgggtcaaagccatccgaggatctcagaaggccc 61744

                                                                         
Query: 326   catattctgagaacagtgtctcgtagctccaacatttgttcccgctcaacatcacttatc 385
             |||||||||| |||  |||| || ||||| | |||||||||||  |||   || ||||||
Sbjct: 61743 catattctgaaaaccctgtcccgcagctcaatcatttgttccctttcagtgtcgcttatc 61684

                                                                         
Query: 386   ttaaagggtccagctgggtttccattggatattaatggcttcaaaaattctggagctgca 445
             || || ||||| ||||| || ||| ||||||||||||| || | ||||||||||||||||
Sbjct: 61683 ttgaacggtccggctggattaccactggatattaatggtttaagaaattctggagctgca 61624

                                                                         
Query: 446   ttgtatgaaccaatcagtgttccaaaggtgatggcttctgtgacacgaaccgcttctttc 505
             || || ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61623 ttatacgaatcaatcagcgttccaaaagtgatggcttctgtgacacgaaccgcttctttc 61564

                                                                         
Query: 506   acaacaagcacccttaaattctccccatctggaccaagtagaagtttcaaaaccggttgt 565
             ||||| || || |  || | ||||||||| |||||||||||||| || | ||| ||||| 
Sbjct: 61563 acaactaggactcgcaattcctccccatcaggaccaagtagaagctttagaactggttgc 61504

                                                                         
Query: 566   agcgcatccttcgctacaaactctctatcctggcgtccttgaacaagaagattttcaagc 625
             |  ||||| || ||| ||||||||||||| ||||  ||||||||||||||||||||||||
Sbjct: 61503 aaagcatcttttgctgcaaactctctatcttggctcccttgaacaagaagattttcaagc 61444

                     
Query: 626   ctattcca 633
             ||||||||
Sbjct: 61443 ctattcca 61436



 Score =  131 bits (66), Expect = 4e-27
 Identities = 99/110 (90%)
 Strand = Plus / Minus

                                                                         
Query: 634   cctgaatttttcatccttgaatagcagctcaatcagagcatctctgagatatggattggg 693
             |||||||||| ||||||||||||| |||||||| | ||||||||||||||||||||||||
Sbjct: 61320 cctgaattttccatccttgaatagtagctcaattaaagcatctctgagatatggattggg 61261

                                                               
Query: 694   atctgtgagtaatcttttagcaaagtaaggatatgaggcagcaagcacct 743
             ||| |||||||  ||||| ||||||||||| || |||||||| |||||||
Sbjct: 61260 atcagtgagtagccttttcgcaaagtaagggtacgaggcagcgagcacct 61211



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  254 bits (128), Expect = 4e-64
 Identities = 308/368 (83%)
 Strand = Plus / Minus

                                                                            
Query: 266      acctgtacaattggctgcaaaagacttggatcaaaggtatcagaggatctcaaaagaccc 325
                ||||| |||||||| ||||| |   |||| ||||||  ||| |||||||||| ||| |||
Sbjct: 14910887 acctgcacaattggttgcaagatggttgggtcaaagccatccgaggatctcagaaggccc 14910828

                                                                            
Query: 326      catattctgagaacagtgtctcgtagctccaacatttgttcccgctcaacatcacttatc 385
                |||||||||| |||  |||| || ||||| | |||||||||||  |||   || ||||||
Sbjct: 14910827 catattctgaaaaccctgtcccgcagctcaatcatttgttccctttcagtgtcgcttatc 14910768

                                                                            
Query: 386      ttaaagggtccagctgggtttccattggatattaatggcttcaaaaattctggagctgca 445
                || || ||||| ||||| || ||| ||||||||||||| || | ||||||||||||||||
Sbjct: 14910767 ttgaacggtccggctggattaccactggatattaatggtttaagaaattctggagctgca 14910708

                                                                            
Query: 446      ttgtatgaaccaatcagtgttccaaaggtgatggcttctgtgacacgaaccgcttctttc 505
                || || ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 14910707 ttatacgaatcaatcagcgttccaaaagtgatggcttctgtgacacgaaccgcttctttc 14910648

                                                                            
Query: 506      acaacaagcacccttaaattctccccatctggaccaagtagaagtttcaaaaccggttgt 565
                ||||| || || |  || | ||||||||| |||||||||||||| || | ||| ||||| 
Sbjct: 14910647 acaactaggactcgcaattcctccccatcaggaccaagtagaagctttagaactggttgc 14910588

                                                                            
Query: 566      agcgcatccttcgctacaaactctctatcctggcgtccttgaacaagaagattttcaagc 625
                |  ||||| || ||| ||||||||||||| ||||  ||||||||||||||||||||||||
Sbjct: 14910587 aaagcatcttttgctgcaaactctctatcttggctcccttgaacaagaagattttcaagc 14910528

                        
Query: 626      ctattcca 633
                ||||||||
Sbjct: 14910527 ctattcca 14910520



 Score =  131 bits (66), Expect = 4e-27
 Identities = 99/110 (90%)
 Strand = Plus / Minus

                                                                            
Query: 634      cctgaatttttcatccttgaatagcagctcaatcagagcatctctgagatatggattggg 693
                |||||||||| ||||||||||||| |||||||| | ||||||||||||||||||||||||
Sbjct: 14910404 cctgaattttccatccttgaatagtagctcaattaaagcatctctgagatatggattggg 14910345

                                                                  
Query: 694      atctgtgagtaatcttttagcaaagtaaggatatgaggcagcaagcacct 743
                ||| |||||||  ||||| ||||||||||| || |||||||| |||||||
Sbjct: 14910344 atcagtgagtagccttttcgcaaagtaagggtacgaggcagcgagcacct 14910295



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>gb|BT012844.1| Lycopersicon esculentum clone 113914R, mRNA sequence
          Length = 2307

 Score =  101 bits (51), Expect = 3e-18
 Identities = 102/119 (85%)
 Strand = Plus / Minus

                                                                        
Query: 617  ttttcaagcctattccacctgaatttttcatccttgaatagcagctcaatcagagcatct 676
            |||||||| ||| |||||||||||||  |||||||||| || | |||||| |||||||||
Sbjct: 1738 ttttcaagtctactccacctgaatttcccatccttgaaaagtaactcaatgagagcatct 1679

                                                                       
Query: 677  ctgagatatggattgggatctgtgagtaatcttttagcaaagtaaggatatgaggcagc 735
            || ||||||||||| |||||||| || |  ||||||||||| || |||||||| |||||
Sbjct: 1678 ctcagatatggattaggatctgtaagaagccttttagcaaaatatggatatgaagcagc 1620



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>ref|NM_106608.2| Arabidopsis thaliana unknown protein AT1G79600 mRNA, complete cds
          Length = 2469

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 89/110 (80%)
 Strand = Plus / Minus

                                                                        
Query: 626  ctattccacctgaatttttcatccttgaatagcagctcaatcagagcatctctgagatat 685
            ||||||||||| |||||| | || |||||||| ||||| || || |||||||| ||||| 
Sbjct: 1823 ctattccacctaaattttccgtctttgaatagtagctcgataagggcatctcttagatac 1764

                                                              
Query: 686  ggattgggatctgtgagtaatcttttagcaaagtaaggatatgaggcagc 735
            || || ||||| ||||| |  ||||| ||||| || || ||||| |||||
Sbjct: 1763 gggtttggatcagtgagaagccttttggcaaaatatgggtatgaagcagc 1714



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>gb|AY141992.1| Arabidopsis thaliana At1g79600/F20B17_3 mRNA, complete cds
          Length = 2136

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 89/110 (80%)
 Strand = Plus / Minus

                                                                        
Query: 626  ctattccacctgaatttttcatccttgaatagcagctcaatcagagcatctctgagatat 685
            ||||||||||| |||||| | || |||||||| ||||| || || |||||||| ||||| 
Sbjct: 1649 ctattccacctaaattttccgtctttgaatagtagctcgataagggcatctcttagatac 1590

                                                              
Query: 686  ggattgggatctgtgagtaatcttttagcaaagtaaggatatgaggcagc 735
            || || ||||| ||||| |  ||||| ||||| || || ||||| |||||
Sbjct: 1589 gggtttggatcagtgagaagccttttggcaaaatatgggtatgaagcagc 1540



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>gb|AY064971.1| Arabidopsis thaliana At1g79600/F20B17_3 mRNA, complete cds
          Length = 2400

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 89/110 (80%)
 Strand = Plus / Minus

                                                                        
Query: 626  ctattccacctgaatttttcatccttgaatagcagctcaatcagagcatctctgagatat 685
            ||||||||||| |||||| | || |||||||| ||||| || || |||||||| ||||| 
Sbjct: 1810 ctattccacctaaattttccgtctttgaatagtagctcgataagggcatctcttagatac 1751

                                                              
Query: 686  ggattgggatctgtgagtaatcttttagcaaagtaaggatatgaggcagc 735
            || || ||||| ||||| |  ||||| ||||| || || ||||| |||||
Sbjct: 1750 gggtttggatcagtgagaagccttttggcaaaatatgggtatgaagcagc 1701



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>gb|AY039869.1| Arabidopsis thaliana At1g79600/F20B17_3 mRNA, complete cds
          Length = 2445

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 89/110 (80%)
 Strand = Plus / Minus

                                                                        
Query: 626  ctattccacctgaatttttcatccttgaatagcagctcaatcagagcatctctgagatat 685
            ||||||||||| |||||| | || |||||||| ||||| || || |||||||| ||||| 
Sbjct: 1800 ctattccacctaaattttccgtctttgaatagtagctcgataagggcatctcttagatac 1741

                                                              
Query: 686  ggattgggatctgtgagtaatcttttagcaaagtaaggatatgaggcagc 735
            || || ||||| ||||| |  ||||| ||||| || || ||||| |||||
Sbjct: 1740 gggtttggatcagtgagaagccttttggcaaaatatgggtatgaagcagc 1691



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>emb|BX815640.1|CNS0AE07 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS79ZG07 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2387

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 89/110 (80%)
 Strand = Plus / Minus

                                                                        
Query: 626  ctattccacctgaatttttcatccttgaatagcagctcaatcagagcatctctgagatat 685
            ||||||||||| |||||| | || |||||||| ||||| || || |||||||| ||||| 
Sbjct: 1779 ctattccacctaaattttccgtctttgaatagtagctcgataagggcatctcttagatac 1720

                                                              
Query: 686  ggattgggatctgtgagtaatcttttagcaaagtaaggatatgaggcagc 735
            || || ||||| ||||| |  ||||| ||||| || || ||||| |||||
Sbjct: 1719 gggtttggatcagtgagaagccttttggcaaaatatgggtatgaagcagc 1670



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>gb|AC010793.3|AC010793 Genomic sequence for Arabidopsis thaliana BAC F20B17 from chromosome I,
             complete sequence
          Length = 90149

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 89/110 (80%)
 Strand = Plus / Plus

                                                                         
Query: 626   ctattccacctgaatttttcatccttgaatagcagctcaatcagagcatctctgagatat 685
             ||||||||||| |||||| | || |||||||| ||||| || || |||||||| ||||| 
Sbjct: 13325 ctattccacctaaattttccgtctttgaatagtagctcgataagggcatctcttagatac 13384

                                                               
Query: 686   ggattgggatctgtgagtaatcttttagcaaagtaaggatatgaggcagc 735
             || || ||||| ||||| |  ||||| ||||| || || ||||| |||||
Sbjct: 13385 gggtttggatcagtgagaagccttttggcaaaatatgggtatgaagcagc 13434



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>emb|AL133314.1|ATF12A12 Arabidopsis thaliana DNA chromosome 3, BAC clone F12A12
          Length = 100815

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 708   ttttagcaaagtaaggatatgag 730
             |||||||||||||||||||||||
Sbjct: 22500 ttttagcaaagtaaggatatgag 22478



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>gb|AC133187.3| Mus musculus BAC clone RP23-324O10 from 1, complete sequence
          Length = 219866

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 55    ttatagttgcttttctttttcctttt 80
             ||||| ||||||||||||||||||||
Sbjct: 53925 ttataattgcttttctttttcctttt 53950



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>gb|AC153022.1| Mus musculus 6 BAC RP23-115M13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 201949

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 457    aatcagtgttccaaaggtgatg 478
              ||||||||||||||||||||||
Sbjct: 102478 aatcagtgttccaaaggtgatg 102499



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>gb|AC005213.1| Homo sapiens chromosome 5, BAC clone 84E9 (LBNL H120), complete
             sequence
          Length = 102431

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 61    ttgcttttctttttccttttg 81
             |||||||||||||||||||||
Sbjct: 81533 ttgcttttctttttccttttg 81513



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>gb|AC107868.9| Mus musculus chromosome 17, clone RP23-405A17, complete sequence
          Length = 193624

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 56     tatagttgcttttctttttcc 76
              |||||||||||||||||||||
Sbjct: 183124 tatagttgcttttctttttcc 183104



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>gb|AC109204.21| Mus musculus chromosome 17, clone RP23-55J9, complete sequence
          Length = 245496

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 56     tatagttgcttttctttttcc 76
              |||||||||||||||||||||
Sbjct: 239582 tatagttgcttttctttttcc 239602



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>gb|AC113038.14| Mus musculus chromosome 17, clone RP23-228K17, complete sequence
          Length = 226769

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 56     tatagttgcttttctttttcc 76
              |||||||||||||||||||||
Sbjct: 105607 tatagttgcttttctttttcc 105627



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>emb|AL591069.5| Human DNA sequence from clone RP11-72O9 on chromosome 6q25.2-26
             Contains the 3' end of the SSLC22A3 gene for solute
             carrier family 22 (extraneuronal monoamine transporter),
             member 3 (extraneuronal monoamine transporter solute
             carrier family 22 (organic cation transporter), member
             3(EMT, EMTh, OCT3)), the APOARGC gene for apolipoprotein
             (a) related gene C and a plasminogen (PLG) pseudogene,
             complete sequence
          Length = 162083

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 56    tatagttgcttttctttttcctttt 80
             |||| ||||||||||||||||||||
Sbjct: 73634 tataattgcttttctttttcctttt 73658



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>emb|AL157397.14| Human DNA sequence from clone RP11-438P12 on chromosome 10, complete
             sequence
          Length = 142281

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 634   cctgaatttttcatccttgaa 654
             |||||||||||||||||||||
Sbjct: 40452 cctgaatttttcatccttgaa 40472



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>gb|AC020701.8| Homo sapiens BAC clone RP11-200K10 from 4, complete sequence
          Length = 129572

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 2     atgaaaataaaacagacgctg 22
             |||||||||||||||||||||
Sbjct: 27842 atgaaaataaaacagacgctg 27862



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>gb|AC007916.10| Homo sapiens 12 BAC RP11-103D14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 121500

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 497   gcttctttcacaacaagcacc 517
             |||||||||||||||||||||
Sbjct: 28669 gcttctttcacaacaagcacc 28649



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>gb|AC009233.3|AC009233 Homo sapiens BAC clone RP11-356K22 from Y, complete sequence
          Length = 195439

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    gcttttctttttccttttggt 83
             |||||||||||||||||||||
Sbjct: 93492 gcttttctttttccttttggt 93512



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>gb|AC005188.1|AC005188 Homo sapiens PAC clone RP1-17P5 from 5q31, complete sequence
          Length = 114918

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 61    ttgcttttctttttccttttg 81
             |||||||||||||||||||||
Sbjct: 36819 ttgcttttctttttccttttg 36799



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>gb|AC100406.7| Mus musculus chromosome 9, clone RP23-134M7, complete sequence
          Length = 183837

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 311    gatctcaaaagaccccatatt 331
              |||||||||||||||||||||
Sbjct: 151059 gatctcaaaagaccccatatt 151039



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>emb|AL691472.6| Mouse DNA sequence from clone RP23-217C12 on chromosome 2, complete
             sequence
          Length = 212364

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 65    ttttctttttccttttggtgc 85
             |||||||||||||||||||||
Sbjct: 83926 ttttctttttccttttggtgc 83946



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>emb|AL663063.14| Mouse DNA sequence from clone RP23-407H16 on chromosome 2, complete
             sequence
          Length = 211815

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 665   atcagagcatctctgagatat 685
             |||||||||||||||||||||
Sbjct: 68508 atcagagcatctctgagatat 68528


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,837,403
Number of Sequences: 3902068
Number of extensions: 7837403
Number of successful extensions: 177656
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 177492
Number of HSP's gapped (non-prelim): 152
length of query: 743
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 720
effective length of database: 17,143,297,704
effective search space: 12343174346880
effective search space used: 12343174346880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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