ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags33k24 |
|---|---|
| Clone Library Name | barley_pub |
>STAD_ORYSA (Q40731) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 390 Score = 52.4 bits (124), Expect = 3e-07 Identities = 23/25 (92%), Positives = 24/25 (96%) Frame = -1 Query: 334 ERAQARAKQGPVVPFSWVYDRKVQL 260 ERAQARAKQ PV+PFSWVYDRKVQL Sbjct: 366 ERAQARAKQAPVIPFSWVYDRKVQL 390
>STAD_CARTI (P22243) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 396 Score = 47.4 bits (111), Expect = 9e-06 Identities = 19/25 (76%), Positives = 24/25 (96%) Frame = -1 Query: 334 ERAQARAKQGPVVPFSWVYDRKVQL 260 ERAQ RAK+GPVVPFSW++DR+V+L Sbjct: 372 ERAQGRAKEGPVVPFSWIFDRQVKL 396
>STAD_BRANA (P29108) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 398 Score = 47.4 bits (111), Expect = 9e-06 Identities = 20/25 (80%), Positives = 24/25 (96%) Frame = -1 Query: 334 ERAQARAKQGPVVPFSWVYDRKVQL 260 ERAQARAK+GP VPFSW++DR+VQL Sbjct: 374 ERAQARAKKGPKVPFSWIHDREVQL 398
>STADS_BRANA (Q01771) Acyl-[acyl-carrier-protein] desaturase, seed specific,| chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 399 Score = 47.0 bits (110), Expect = 1e-05 Identities = 19/25 (76%), Positives = 24/25 (96%) Frame = -1 Query: 334 ERAQARAKQGPVVPFSWVYDRKVQL 260 ERAQARAK+GP +PFSW++DR+VQL Sbjct: 375 ERAQARAKKGPKIPFSWIHDREVQL 399
>STAD_CUCSA (P32061) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 396 Score = 45.4 bits (106), Expect = 3e-05 Identities = 17/25 (68%), Positives = 23/25 (92%) Frame = -1 Query: 334 ERAQARAKQGPVVPFSWVYDRKVQL 260 ERAQ RAK+GP +PFSW++DR+V+L Sbjct: 372 ERAQGRAKEGPTIPFSWIFDRQVKL 396
>STAD_RICCO (P22337) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) (Delta(9) stearoyl-acyl carrier protein desaturase) Length = 396 Score = 42.4 bits (98), Expect = 3e-04 Identities = 16/25 (64%), Positives = 22/25 (88%) Frame = -1 Query: 334 ERAQARAKQGPVVPFSWVYDRKVQL 260 ERAQ RAK+ P +PFSW++DR+V+L Sbjct: 372 ERAQGRAKEAPTMPFSWIFDRQVKL 396
>STAD_SPIOL (P28645) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 399 Score = 40.8 bits (94), Expect = 8e-04 Identities = 16/25 (64%), Positives = 22/25 (88%) Frame = -1 Query: 334 ERAQARAKQGPVVPFSWVYDRKVQL 260 ERA+ RAKQ P +PFSW++DR+V+L Sbjct: 375 ERARERAKQAPSMPFSWIFDRQVKL 399
>STAD_ELAGV (O24428) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 393 Score = 40.0 bits (92), Expect = 0.001 Identities = 17/25 (68%), Positives = 20/25 (80%) Frame = -1 Query: 334 ERAQARAKQGPVVPFSWVYDRKVQL 260 ERAQ RAKQ P +P SW+Y R+VQL Sbjct: 369 ERAQERAKQAPRIPCSWIYGREVQL 393
>STAD_SOLCO (Q41319) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 393 Score = 37.0 bits (84), Expect = 0.012 Identities = 16/25 (64%), Positives = 20/25 (80%) Frame = -1 Query: 334 ERAQARAKQGPVVPFSWVYDRKVQL 260 ERAQARAKQ VPFSWV+ + ++L Sbjct: 369 ERAQARAKQKAPVPFSWVFGKDIKL 393
>STAD_SOLTU (P46253) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 393 Score = 36.2 bits (82), Expect = 0.021 Identities = 14/25 (56%), Positives = 20/25 (80%) Frame = -1 Query: 334 ERAQARAKQGPVVPFSWVYDRKVQL 260 ERAQARAK VPFSW++ ++++L Sbjct: 369 ERAQARAKHAKSVPFSWIFGKEIKL 393
>STAD_HELAN (Q96456) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 396 Score = 36.2 bits (82), Expect = 0.021 Identities = 15/25 (60%), Positives = 20/25 (80%) Frame = -1 Query: 334 ERAQARAKQGPVVPFSWVYDRKVQL 260 ER ARAK+ VPFSW++DR+V+L Sbjct: 372 ERNSARAKESVNVPFSWIFDREVKL 396
>STAD_OLEEU (Q43593) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 390 Score = 33.9 bits (76), Expect = 0.10 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = -1 Query: 334 ERAQARAKQGPVVPFSWVYDRKVQL 260 ERAQ+R K+ PFSW++ R++ L Sbjct: 366 ERAQSRVKKASATPFSWIFGREINL 390
>STAD_GOSHI (Q42770) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 397 Score = 33.5 bits (75), Expect = 0.14 Identities = 15/26 (57%), Positives = 21/26 (80%), Gaps = 1/26 (3%) Frame = -1 Query: 334 ERAQARAKQG-PVVPFSWVYDRKVQL 260 ERAQ +A+ PV PFSW++DR+V+L Sbjct: 372 ERAQEKAQGSTPVSPFSWIFDREVKL 397
>Y450_MYCPN (Q50362) Hypothetical protein MG315 homolog (H08_orf314)| Length = 314 Score = 33.1 bits (74), Expect = 0.18 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%) Frame = +2 Query: 128 CHPTTYRTAHKTFYPARKTYTVNRNAI**DRCSLI---NLGVPSSLLELHFAVINPAEWN 298 C P T +T H+ A KT +N N D + I NLGV L +++PAE Sbjct: 121 CKPVTAKTIHQVISKAAKTLKLNLNPDLIDHLATILPFNLGVIEQELR-KLTLLSPAELQ 179 Query: 299 HRPLFRPCLCSF 334 + + LC + Sbjct: 180 DKKMLEAVLCDY 191
>STAD_SOYBN (Q42807) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 411 Score = 32.3 bits (72), Expect = 0.30 Identities = 12/22 (54%), Positives = 17/22 (77%) Frame = -1 Query: 334 ERAQARAKQGPVVPFSWVYDRK 269 ERAQAR K+ + FSW++DR+ Sbjct: 367 ERAQARVKESSTLKFSWIHDRE 388
>STAD_SIMCH (Q01753) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 398 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/25 (40%), Positives = 21/25 (84%) Frame = -1 Query: 334 ERAQARAKQGPVVPFSWVYDRKVQL 260 ERAQ+ +K +VPFSW++++++++ Sbjct: 374 ERAQSLSKPVSLVPFSWIFNKELKV 398
>STAD_LINUS (P32062) Acyl-[acyl-carrier-protein] desaturase, chloroplast| precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) Length = 396 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = -1 Query: 334 ERAQARAKQ-GPVVPFSWVYDRKVQL 260 ERA RAKQ VPFSW++ R++ L Sbjct: 371 ERAAGRAKQTSKSVPFSWIFSRELVL 396
>DERM_HUMAN (Q07507) Dermatopontin precursor (Tyrosine-rich acidic matrix| protein) (TRAMP) Length = 201 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 6/41 (14%) Frame = -1 Query: 151 CPVSCWMTV------GEEASETGVRCWLXVKGSVATFCCVE 47 CP SCW+T GEE ++G+ TF VE Sbjct: 139 CPYSCWLTTEYPGHYGEEMDMISYNYDYYIRGATTTFSAVE 179
>DERM_BOVIN (P19427) Dermatopontin (Tyrosine-rich acidic matrix protein)| (TRAMP) (22 kDa extracellular matrix protein) (Dermatan sulfate proteoglycan-associated protein 22K) Length = 183 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 6/41 (14%) Frame = -1 Query: 151 CPVSCWMTV------GEEASETGVRCWLXVKGSVATFCCVE 47 CP SCW+T GEE ++G+ TF VE Sbjct: 121 CPYSCWLTTEYPGHYGEEMDMISYNYDYYMRGATTTFSAVE 161
>DERM_MOUSE (Q9QZZ6) Dermatopontin precursor (Tyrosine-rich acidic matrix| protein) (TRAMP) (Early quiescence protein 1) (EQ-1) Length = 201 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 6/41 (14%) Frame = -1 Query: 151 CPVSCWMTV------GEEASETGVRCWLXVKGSVATFCCVE 47 CP SCWMT GE+ ++G+ TF VE Sbjct: 139 CPYSCWMTTEYPSHYGEDMDMISYDYDFYMRGATTTFSAVE 179
>A1I3_RAT (P14046) Alpha-1-inhibitor 3 precursor (Alpha-1-inhibitor III)| Length = 1477 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = -1 Query: 163 CFMCCPVSCWMTVGEEASETGVRCWLXVKGSVATFCCVEYFM*PL 29 C M P++ V ETG+ + +K + T+C +Y M PL Sbjct: 643 CLMYQPIAREKDVYRYVRETGLMAFTNLKIKLPTYCNTDYDMVPL 687 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,655,708 Number of Sequences: 219361 Number of extensions: 932058 Number of successful extensions: 1794 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 1759 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1794 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
