ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33k24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472226.1| Oryza sativa (japonica cultivar-group), predic... 68 2e-08
2emb|AL607000.3|OSJN00132 Oryza sativa genomic DNA, chromosome 4,... 68 2e-08
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
4dbj|AK065340.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
5dbj|D38753.1|RICSACPD Oryza sativa (japonica cultivar-group) mRN... 68 2e-08
6gb|BT018773.1| Zea mays clone EL01N0525H02.d mRNA sequence 54 3e-04
7gb|AY104301.1| Zea mays PCO071296 mRNA sequence 54 3e-04
8gb|AY188688.1| Tropaeolum majus putative stearoyl-acyl carrier p... 46 0.072
9gb|AC117470.8| Homo sapiens 3 BAC RP11-529P9 (Roswell Park Cance... 42 1.1
10gb|AC073321.4| Homo sapiens BAC clone RP11-307A11 from 2, comple... 42 1.1
11gb|AC091477.6| Mus musculus chromosome 1, clone RP23-309P1, comp... 40 4.4
12gb|AC149238.1| Pan troglodytes chromosome X clone RP43-017F15 ma... 40 4.4
13gb|AC110822.6| Mus musculus BAC clone RP24-226H7 from chromosome... 40 4.4
14gb|AC134149.2| Homo sapiens X BAC RP11-42N20 (Roswell Park Cance... 40 4.4
15gb|AC125526.4| Mus musculus BAC clone RP24-498L21 from chromosom... 40 4.4
16gb|AC106038.3| Homo sapiens chromosome 8, clone RP11-68L18, comp... 40 4.4
17gb|AC133868.10| Mus musculus chromosome 15, clone RP24-430H1, co... 40 4.4
18emb|CT033761.14| Mouse DNA sequence from clone RP23-203P12 on ch... 40 4.4
19dbj|AB015752.1| Homo sapiens genomic DNA, chromosome 8q21, BAC c... 40 4.4 
>ref|XM_472226.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1104

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 261  agctgcactttgcggtcataaacccagctgaatggaaccacaggcccctgtttcgccctt 320
            |||||||||||||||||||||||||||||||| ||||  |||||| | || || || |||
Sbjct: 1100 agctgcactttgcggtcataaacccagctgaaaggaataacaggcgcttgcttagctctt 1041

                          
Query: 321  gcctgtgctctttc 334
            || || ||||||||
Sbjct: 1040 gcttgggctctttc 1027
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>emb|AL607000.3|OSJN00132 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089B03,
             complete sequence
          Length = 130910

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                         
Query: 261   agctgcactttgcggtcataaacccagctgaatggaaccacaggcccctgtttcgccctt 320
             |||||||||||||||||||||||||||||||| ||||  |||||| | || || || |||
Sbjct: 39365 agctgcactttgcggtcataaacccagctgaaaggaataacaggcgcttgcttagctctt 39424

                           
Query: 321   gcctgtgctctttc 334
             || || ||||||||
Sbjct: 39425 gcttgggctctttc 39438
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                            
Query: 261      agctgcactttgcggtcataaacccagctgaatggaaccacaggcccctgtttcgccctt 320
                |||||||||||||||||||||||||||||||| ||||  |||||| | || || || |||
Sbjct: 18571499 agctgcactttgcggtcataaacccagctgaaaggaataacaggcgcttgcttagctctt 18571558

                              
Query: 321      gcctgtgctctttc 334
                || || ||||||||
Sbjct: 18571559 gcttgggctctttc 18571572
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>dbj|AK065340.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000O12, full
            insert sequence
          Length = 1678

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 261  agctgcactttgcggtcataaacccagctgaatggaaccacaggcccctgtttcgccctt 320
            |||||||||||||||||||||||||||||||| ||||  |||||| | || || || |||
Sbjct: 1264 agctgcactttgcggtcataaacccagctgaaaggaataacaggcgcttgcttagctctt 1205

                          
Query: 321  gcctgtgctctttc 334
            || || ||||||||
Sbjct: 1204 gcttgggctctttc 1191
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>dbj|D38753.1|RICSACPD Oryza sativa (japonica cultivar-group) mRNA stearyl-ACP desaturase,
            complete cds
          Length = 1667

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 261  agctgcactttgcggtcataaacccagctgaatggaaccacaggcccctgtttcgccctt 320
            |||||||||||||||||||||||||||||||| ||||  |||||| | || || || |||
Sbjct: 1240 agctgcactttgcggtcataaacccagctgaaaggaataacaggcgcttgcttagctctt 1181

                          
Query: 321  gcctgtgctctttc 334
            || || ||||||||
Sbjct: 1180 gcttgggctctttc 1167
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>gb|BT018773.1| Zea mays clone EL01N0525H02.d mRNA sequence
          Length = 1699

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 251  tctttattagagctgcactttgcggtcataaacccagctgaatggaa 297
            |||| |||| |||||||| ||||||||||||||||| ||||| ||||
Sbjct: 1301 tcttgattaaagctgcaccttgcggtcataaacccaactgaaaggaa 1255
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>gb|AY104301.1| Zea mays PCO071296 mRNA sequence
          Length = 1623

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 251  tctttattagagctgcactttgcggtcataaacccagctgaatggaa 297
            |||| |||| |||||||| ||||||||||||||||| ||||| ||||
Sbjct: 1284 tcttgattaaagctgcaccttgcggtcataaacccaactgaaaggaa 1238
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>gb|AY188688.1| Tropaeolum majus putative stearoyl-acyl carrier protein desaturase
            mRNA, complete cds
          Length = 1464

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 65/79 (82%)
 Strand = Plus / Minus

                                                                        
Query: 256  attagagctgcactttgcggtcataaacccagctgaatggaaccacaggcccctgtttcg 315
            |||||||||||||||  || ||||||||||| ||||| |||| |   || || ||||| |
Sbjct: 1215 attagagctgcacttcccgatcataaacccaactgaacggaatccgcggtccttgtttag 1156

                               
Query: 316  cccttgcctgtgctctttc 334
            ||||||| || ||||||||
Sbjct: 1155 cccttgcttgagctctttc 1137
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>gb|AC117470.8| Homo sapiens 3 BAC RP11-529P9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 190630

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 41    aaaatattcaacacaacaaaa 61
             |||||||||||||||||||||
Sbjct: 27732 aaaatattcaacacaacaaaa 27712
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>gb|AC073321.4| Homo sapiens BAC clone RP11-307A11 from 2, complete sequence
          Length = 162208

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 149   acagcacataaaacattctac 169
             |||||||||||||||||||||
Sbjct: 74301 acagcacataaaacattctac 74321
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>gb|AC091477.6| Mus musculus chromosome 1, clone RP23-309P1, complete sequence
          Length = 218109

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 158    aaaacattctaccctgctaggaaa 181
              ||||||||||||||||||| ||||
Sbjct: 113823 aaaacattctaccctgctatgaaa 113846
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>gb|AC149238.1| Pan troglodytes chromosome X clone RP43-017F15 map human ortholog
            p21.2, complete sequence
          Length = 60471

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 153  cacataaaacattctaccct 172
            ||||||||||||||||||||
Sbjct: 4883 cacataaaacattctaccct 4864
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>gb|AC110822.6| Mus musculus BAC clone RP24-226H7 from chromosome 9, complete sequence
          Length = 144131

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    aaaatattcaacacaacaaa 60
             ||||||||||||||||||||
Sbjct: 24387 aaaatattcaacacaacaaa 24368
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>gb|AC134149.2| Homo sapiens X BAC RP11-42N20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 78112

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   cacataaaacattctaccct 172
             ||||||||||||||||||||
Sbjct: 21252 cacataaaacattctaccct 21233
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>gb|AC125526.4| Mus musculus BAC clone RP24-498L21 from chromosome 15, complete sequence
          Length = 178670

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     tcacataaaatattcaacac 54
              ||||||||||||||||||||
Sbjct: 121026 tcacataaaatattcaacac 121045
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>gb|AC106038.3| Homo sapiens chromosome 8, clone RP11-68L18, complete sequence
          Length = 159024

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     aaatattcaacacaacaaaa 61
              ||||||||||||||||||||
Sbjct: 118559 aaatattcaacacaacaaaa 118540
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>gb|AC133868.10| Mus musculus chromosome 15, clone RP24-430H1, complete sequence
          Length = 142534

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    tcacataaaatattcaacac 54
             ||||||||||||||||||||
Sbjct: 35058 tcacataaaatattcaacac 35077
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>emb|CT033761.14| Mouse DNA sequence from clone RP23-203P12 on chromosome 9, complete
             sequence
          Length = 208050

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    aaaatattcaacacaacaaa 60
             ||||||||||||||||||||
Sbjct: 78293 aaaatattcaacacaacaaa 78274
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>dbj|AB015752.1| Homo sapiens genomic DNA, chromosome 8q21, BAC clone 521F14, complete
             sequence
          Length = 116160

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    aaatattcaacacaacaaaa 61
             ||||||||||||||||||||
Sbjct: 79251 aaatattcaacacaacaaaa 79270


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,071,754
Number of Sequences: 3902068
Number of extensions: 3071754
Number of successful extensions: 84790
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84741
Number of HSP's gapped (non-prelim): 49
length of query: 334
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 312
effective length of database: 17,147,199,772
effective search space: 5349926328864
effective search space used: 5349926328864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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