ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33k23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 1e-08
2dbj|AP003257.3| Oryza sativa (japonica cultivar-group) genomic D... 68 1e-08
3dbj|AK069339.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 1e-08
4ref|XM_462855.1| Oryza sativa (japonica cultivar-group), predic... 58 1e-05
5gb|AY107398.1| Zea mays PCO119340 mRNA sequence 44 0.16
6gb|AC138284.9| Mus musculus chromosome 9, clone RP23-356D13, com... 42 0.64
7gb|AC092108.4| Homo sapiens BAC clone RP11-1263I10 from 7, compl... 42 0.64
8dbj|AK195602.1| Mus musculus cDNA, clone:Y1G0119A07, strand:unsp... 42 0.64
9dbj|AB019230.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 0.64
10ref|NM_188632.1| Oryza sativa (japonica cultivar-group), Ozsa823... 40 2.5
11dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
12dbj|BS000240.1| Pan troglodytes chromosome 22 clone:RP43-055A16,... 40 2.5
13dbj|AK120694.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.5
14emb|AL163303.2|HS21C103 Homo sapiens chromosome 21 segment HS21C103 40 2.5
15emb|AJ011932.1|HSQ4H9 Homo sapiens chromosome 21q22.3, cosmid cl... 40 2.5
16dbj|AP000468.1| Homo sapiens genomic DNA, chromosome 21q22.3, cl... 40 2.5

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                      
Query: 139      aaagatcatagcagattcttctgagcaagcagaacccc 176
                ||||||||||||||||||||||| ||||||||||||||
Sbjct: 14662445 aaagatcatagcagattcttctgggcaagcagaacccc 14662482



 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 151     agattcttctgagcaagcag 170
               ||||||||||||||||||||
Sbjct: 7327398 agattcttctgagcaagcag 7327417



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>dbj|AP003257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0460H02
          Length = 155012

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                   
Query: 139   aaagatcatagcagattcttctgagcaagcagaacccc 176
             ||||||||||||||||||||||| ||||||||||||||
Sbjct: 31545 aaagatcatagcagattcttctgggcaagcagaacccc 31582



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>dbj|AK069339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014L08, full
           insert sequence
          Length = 1083

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                 
Query: 139 aaagatcatagcagattcttctgagcaagcagaacccc 176
           ||||||||||||||||||||||| ||||||||||||||
Sbjct: 823 aaagatcatagcagattcttctgggcaagcagaacccc 786



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>ref|XM_462855.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 693

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 144 tcatagcagattcttctgagcaagcagaacccc 176
           |||||||||||||||||| ||||||||||||||
Sbjct: 693 tcatagcagattcttctgggcaagcagaacccc 661



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>gb|AY107398.1| Zea mays PCO119340 mRNA sequence
          Length = 1414

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 142 gatcatagcagattcttctgagcaag 167
           |||||||||||||||||||| |||||
Sbjct: 957 gatcatagcagattcttctgggcaag 932



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>gb|AC138284.9| Mus musculus chromosome 9, clone RP23-356D13, complete sequence
          Length = 220266

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 150   cagattcttctgagcaagcagaacc 174
             ||||||| |||||||||||||||||
Sbjct: 41709 cagattcgtctgagcaagcagaacc 41685



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>gb|AC092108.4| Homo sapiens BAC clone RP11-1263I10 from 7, complete sequence
          Length = 26349

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 75    acttggaaattttcaaccaat 95
             |||||||||||||||||||||
Sbjct: 15743 acttggaaattttcaaccaat 15723



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>dbj|AK195602.1| Mus musculus cDNA, clone:Y1G0119A07, strand:unspecified
          Length = 396

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 150 cagattcttctgagcaagcagaacc 174
           ||||||| |||||||||||||||||
Sbjct: 211 cagattcgtctgagcaagcagaacc 187



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>dbj|AB019230.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEB5
          Length = 74968

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 137   gaaaagatcatagcagattct 157
             |||||||||||||||||||||
Sbjct: 14037 gaaaagatcatagcagattct 14017



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>ref|NM_188632.1| Oryza sativa (japonica cultivar-group), Ozsa8235 predicted mRNA
          Length = 2418

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 agattcttctgagcaagcag 170
           ||||||||||||||||||||
Sbjct: 801 agattcttctgagcaagcag 820



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>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0431F01
          Length = 143209

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    agattcttctgagcaagcag 170
              ||||||||||||||||||||
Sbjct: 128828 agattcttctgagcaagcag 128847



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>dbj|BS000240.1| Pan troglodytes chromosome 22 clone:RP43-055A16, map 22, complete
             sequences
          Length = 185079

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    cgacacttggaaattttcaa 90
             ||||||||||||||||||||
Sbjct: 72328 cgacacttggaaattttcaa 72309



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>dbj|AK120694.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170G05, full
            insert sequence
          Length = 4407

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 151  agattcttctgagcaagcag 170
            ||||||||||||||||||||
Sbjct: 1735 agattcttctgagcaagcag 1754



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>emb|AL163303.2|HS21C103 Homo sapiens chromosome 21 segment HS21C103
          Length = 340000

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     cgacacttggaaattttcaa 90
              ||||||||||||||||||||
Sbjct: 315255 cgacacttggaaattttcaa 315236



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>emb|AJ011932.1|HSQ4H9 Homo sapiens chromosome 21q22.3, cosmid clone Q4H9 complete sequence
            bases 1..41604
          Length = 41604

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   cgacacttggaaattttcaa 90
            ||||||||||||||||||||
Sbjct: 4797 cgacacttggaaattttcaa 4778



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>dbj|AP000468.1| Homo sapiens genomic DNA, chromosome 21q22.3, clone:f60A9, complete
            sequence
          Length = 19636

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   cgacacttggaaattttcaa 90
            ||||||||||||||||||||
Sbjct: 2722 cgacacttggaaattttcaa 2703


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,329,480
Number of Sequences: 3902068
Number of extensions: 1329480
Number of successful extensions: 87932
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87835
Number of HSP's gapped (non-prelim): 97
length of query: 202
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 180
effective length of database: 17,147,199,772
effective search space: 3086495958960
effective search space used: 3086495958960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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