| Clone Name | rbags33k23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 1e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 139 aaagatcatagcagattcttctgagcaagcagaacccc 176 ||||||||||||||||||||||| |||||||||||||| Sbjct: 14662445 aaagatcatagcagattcttctgggcaagcagaacccc 14662482 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 agattcttctgagcaagcag 170 |||||||||||||||||||| Sbjct: 7327398 agattcttctgagcaagcag 7327417
>dbj|AP003257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460H02 Length = 155012 Score = 67.9 bits (34), Expect = 1e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 139 aaagatcatagcagattcttctgagcaagcagaacccc 176 ||||||||||||||||||||||| |||||||||||||| Sbjct: 31545 aaagatcatagcagattcttctgggcaagcagaacccc 31582
>dbj|AK069339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014L08, full insert sequence Length = 1083 Score = 67.9 bits (34), Expect = 1e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 139 aaagatcatagcagattcttctgagcaagcagaacccc 176 ||||||||||||||||||||||| |||||||||||||| Sbjct: 823 aaagatcatagcagattcttctgggcaagcagaacccc 786
>ref|XM_462855.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 693 Score = 58.0 bits (29), Expect = 1e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 144 tcatagcagattcttctgagcaagcagaacccc 176 |||||||||||||||||| |||||||||||||| Sbjct: 693 tcatagcagattcttctgggcaagcagaacccc 661
>gb|AY107398.1| Zea mays PCO119340 mRNA sequence Length = 1414 Score = 44.1 bits (22), Expect = 0.16 Identities = 25/26 (96%) Strand = Plus / Minus Query: 142 gatcatagcagattcttctgagcaag 167 |||||||||||||||||||| ||||| Sbjct: 957 gatcatagcagattcttctgggcaag 932
>gb|AC138284.9| Mus musculus chromosome 9, clone RP23-356D13, complete sequence Length = 220266 Score = 42.1 bits (21), Expect = 0.64 Identities = 24/25 (96%) Strand = Plus / Minus Query: 150 cagattcttctgagcaagcagaacc 174 ||||||| ||||||||||||||||| Sbjct: 41709 cagattcgtctgagcaagcagaacc 41685
>gb|AC092108.4| Homo sapiens BAC clone RP11-1263I10 from 7, complete sequence Length = 26349 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 acttggaaattttcaaccaat 95 ||||||||||||||||||||| Sbjct: 15743 acttggaaattttcaaccaat 15723
>dbj|AK195602.1| Mus musculus cDNA, clone:Y1G0119A07, strand:unspecified Length = 396 Score = 42.1 bits (21), Expect = 0.64 Identities = 24/25 (96%) Strand = Plus / Minus Query: 150 cagattcttctgagcaagcagaacc 174 ||||||| ||||||||||||||||| Sbjct: 211 cagattcgtctgagcaagcagaacc 187
>dbj|AB019230.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEB5 Length = 74968 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 gaaaagatcatagcagattct 157 ||||||||||||||||||||| Sbjct: 14037 gaaaagatcatagcagattct 14017
>ref|NM_188632.1| Oryza sativa (japonica cultivar-group), Ozsa8235 predicted mRNA Length = 2418 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 agattcttctgagcaagcag 170 |||||||||||||||||||| Sbjct: 801 agattcttctgagcaagcag 820
>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431F01 Length = 143209 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 agattcttctgagcaagcag 170 |||||||||||||||||||| Sbjct: 128828 agattcttctgagcaagcag 128847
>dbj|BS000240.1| Pan troglodytes chromosome 22 clone:RP43-055A16, map 22, complete sequences Length = 185079 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cgacacttggaaattttcaa 90 |||||||||||||||||||| Sbjct: 72328 cgacacttggaaattttcaa 72309
>dbj|AK120694.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170G05, full insert sequence Length = 4407 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 agattcttctgagcaagcag 170 |||||||||||||||||||| Sbjct: 1735 agattcttctgagcaagcag 1754
>emb|AL163303.2|HS21C103 Homo sapiens chromosome 21 segment HS21C103 Length = 340000 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cgacacttggaaattttcaa 90 |||||||||||||||||||| Sbjct: 315255 cgacacttggaaattttcaa 315236
>emb|AJ011932.1|HSQ4H9 Homo sapiens chromosome 21q22.3, cosmid clone Q4H9 complete sequence bases 1..41604 Length = 41604 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cgacacttggaaattttcaa 90 |||||||||||||||||||| Sbjct: 4797 cgacacttggaaattttcaa 4778
>dbj|AP000468.1| Homo sapiens genomic DNA, chromosome 21q22.3, clone:f60A9, complete sequence Length = 19636 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cgacacttggaaattttcaa 90 |||||||||||||||||||| Sbjct: 2722 cgacacttggaaattttcaa 2703 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,329,480 Number of Sequences: 3902068 Number of extensions: 1329480 Number of successful extensions: 87932 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87835 Number of HSP's gapped (non-prelim): 97 length of query: 202 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 180 effective length of database: 17,147,199,772 effective search space: 3086495958960 effective search space used: 3086495958960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)