ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1n18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RIN1_RAT (P97680) Ras and Rab interactor 1 (Ras interaction/inte... 28 5.1
2G6PI2_COLP3 (Q483D3) Glucose-6-phosphate isomerase 2 (EC 5.3.1.9... 28 8.7

>RIN1_RAT (P97680) Ras and Rab interactor 1 (Ras interaction/interference|
           protein 1)
          Length = 774

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 173 LDELQRATSLACRAGY-VTSLACNRLLFSVLFEAHLLPLN 57
           + EL   T L    GY +TSL+ +  L S L +AH LPL+
Sbjct: 562 MSELLEPTLLTGEGGYYLTSLSASLALLSGLSQAHALPLS 601



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>G6PI2_COLP3 (Q483D3) Glucose-6-phosphate isomerase 2 (EC 5.3.1.9) (GPI 2)|
           (Phosphoglucose isomerase 2) (PGI 2) (Phosphohexose
           isomerase 2) (PHI 2)
          Length = 551

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 49  TNQFNGSK*ASNNTENKSLLHARL 120
           T QFNG K   NNTE +S+LH  L
Sbjct: 69  TGQFNGDK--INNTEGRSVLHTIL 90


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,067,416
Number of Sequences: 219361
Number of extensions: 325987
Number of successful extensions: 836
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 80,573,946
effective HSP length: 38
effective length of database: 72,238,228
effective search space used: 1733717472
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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