ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33j22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_184033.1| Oryza sativa (japonica cultivar-group), predic... 56 2e-05
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-05
3dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-05
4dbj|AP003258.3| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-05
5dbj|AK102963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 2e-05
6gb|BT017497.1| Zea mays clone EL01N0413G05.c mRNA sequence 46 0.021
7gb|AY105441.1| Zea mays PCO072816 mRNA sequence 44 0.083
8gb|AC092701.2| Homo sapiens chromosome 15, clone RP11-758M2, com... 42 0.33
9ref|XM_460720.1| Debaryomyces hansenii CBS767 hypothetical prote... 38 5.1
10emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS... 38 5.1

>ref|NM_184033.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2403

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 74   cttctttggattctgcctagcacccctagttccaaa 109
            |||||| ||||| |||||||||||||||||||||||
Sbjct: 2358 cttcttcggattttgcctagcacccctagttccaaa 2323



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                    
Query: 74       cttctttggattctgcctagcacccctagttccaaa 109
                |||||| ||||| |||||||||||||||||||||||
Sbjct: 14044905 cttcttcggattttgcctagcacccctagttccaaa 14044870



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>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1051E10
          Length = 207782

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 74     cttctttggattctgcctagcacccctagttccaaa 109
              |||||| ||||| |||||||||||||||||||||||
Sbjct: 205207 cttcttcggattttgcctagcacccctagttccaaa 205172



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>dbj|AP003258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0463A02
          Length = 151041

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 74     cttctttggattctgcctagcacccctagttccaaa 109
              |||||| ||||| |||||||||||||||||||||||
Sbjct: 120650 cttcttcggattttgcctagcacccctagttccaaa 120615



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>dbj|AK102963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115I11, full
            insert sequence
          Length = 3046

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 74   cttctttggattctgcctagcacccctagttccaaa 109
            |||||| ||||| |||||||||||||||||||||||
Sbjct: 2429 cttcttcggattttgcctagcacccctagttccaaa 2394



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>gb|BT017497.1| Zea mays clone EL01N0413G05.c mRNA sequence
          Length = 1226

 Score = 46.1 bits (23), Expect = 0.021
 Identities = 62/75 (82%), Gaps = 4/75 (5%)
 Strand = Plus / Minus

                                                                       
Query: 32  gcttctttaagcctcttgataagggtatccagcagcatantgcttctttggattctgcct 91
           |||||| | ||||||||||| |||||||||||    | | | ||||||||| ||||||||
Sbjct: 572 gcttctctgagcctcttgatcagggtatccag----agatttcttctttgggttctgcct 517

                          
Query: 92  agcacccctagttcc 106
            |||||||| |||||
Sbjct: 516 ggcaccccttgttcc 502



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>gb|AY105441.1| Zea mays PCO072816 mRNA sequence
          Length = 615

 Score = 44.1 bits (22), Expect = 0.083
 Identities = 64/78 (82%), Gaps = 4/78 (5%)
 Strand = Plus / Minus

                                                                       
Query: 32  gcttctttaagcctcttgataagggtatccagcagcatantgcttctttggattctgcct 91
           |||||| | ||||||||||| |||||||||||    | | | ||||||||| ||||||||
Sbjct: 380 gcttctctgagcctcttgatcagggtatccag----agatttcttctttgggttctgcct 325

                             
Query: 92  agcacccctagttccaaa 109
            |||||||| || |||||
Sbjct: 324 ggcaccccttgtcccaaa 307



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>gb|AC092701.2| Homo sapiens chromosome 15, clone RP11-758M2, complete sequence
          Length = 171403

 Score = 42.1 bits (21), Expect = 0.33
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 83    attctgcctagcacccctagttcca 107
             |||||||||| ||||||||||||||
Sbjct: 86478 attctgcctatcacccctagttcca 86454



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>ref|XM_460720.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F09163g)
            partial mRNA
          Length = 1053

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 33   cttctttaagcctcttgat 51
            |||||||||||||||||||
Sbjct: 1005 cttctttaagcctcttgat 987



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>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
              hansenii
          Length = 2336804

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 33     cttctttaagcctcttgat 51
              |||||||||||||||||||
Sbjct: 728535 cttctttaagcctcttgat 728553


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 585,130
Number of Sequences: 3902068
Number of extensions: 585130
Number of successful extensions: 38695
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38664
Number of HSP's gapped (non-prelim): 31
length of query: 113
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 92
effective length of database: 17,151,101,840
effective search space: 1577901369280
effective search space used: 1577901369280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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