| Clone Name | rbags33j22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_184033.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2403 Score = 56.0 bits (28), Expect = 2e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 74 cttctttggattctgcctagcacccctagttccaaa 109 |||||| ||||| ||||||||||||||||||||||| Sbjct: 2358 cttcttcggattttgcctagcacccctagttccaaa 2323
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 56.0 bits (28), Expect = 2e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 74 cttctttggattctgcctagcacccctagttccaaa 109 |||||| ||||| ||||||||||||||||||||||| Sbjct: 14044905 cttcttcggattttgcctagcacccctagttccaaa 14044870
>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1051E10 Length = 207782 Score = 56.0 bits (28), Expect = 2e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 74 cttctttggattctgcctagcacccctagttccaaa 109 |||||| ||||| ||||||||||||||||||||||| Sbjct: 205207 cttcttcggattttgcctagcacccctagttccaaa 205172
>dbj|AP003258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0463A02 Length = 151041 Score = 56.0 bits (28), Expect = 2e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 74 cttctttggattctgcctagcacccctagttccaaa 109 |||||| ||||| ||||||||||||||||||||||| Sbjct: 120650 cttcttcggattttgcctagcacccctagttccaaa 120615
>dbj|AK102963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115I11, full insert sequence Length = 3046 Score = 56.0 bits (28), Expect = 2e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 74 cttctttggattctgcctagcacccctagttccaaa 109 |||||| ||||| ||||||||||||||||||||||| Sbjct: 2429 cttcttcggattttgcctagcacccctagttccaaa 2394
>gb|BT017497.1| Zea mays clone EL01N0413G05.c mRNA sequence Length = 1226 Score = 46.1 bits (23), Expect = 0.021 Identities = 62/75 (82%), Gaps = 4/75 (5%) Strand = Plus / Minus Query: 32 gcttctttaagcctcttgataagggtatccagcagcatantgcttctttggattctgcct 91 |||||| | ||||||||||| ||||||||||| | | | ||||||||| |||||||| Sbjct: 572 gcttctctgagcctcttgatcagggtatccag----agatttcttctttgggttctgcct 517 Query: 92 agcacccctagttcc 106 |||||||| ||||| Sbjct: 516 ggcaccccttgttcc 502
>gb|AY105441.1| Zea mays PCO072816 mRNA sequence Length = 615 Score = 44.1 bits (22), Expect = 0.083 Identities = 64/78 (82%), Gaps = 4/78 (5%) Strand = Plus / Minus Query: 32 gcttctttaagcctcttgataagggtatccagcagcatantgcttctttggattctgcct 91 |||||| | ||||||||||| ||||||||||| | | | ||||||||| |||||||| Sbjct: 380 gcttctctgagcctcttgatcagggtatccag----agatttcttctttgggttctgcct 325 Query: 92 agcacccctagttccaaa 109 |||||||| || ||||| Sbjct: 324 ggcaccccttgtcccaaa 307
>gb|AC092701.2| Homo sapiens chromosome 15, clone RP11-758M2, complete sequence Length = 171403 Score = 42.1 bits (21), Expect = 0.33 Identities = 24/25 (96%) Strand = Plus / Minus Query: 83 attctgcctagcacccctagttcca 107 |||||||||| |||||||||||||| Sbjct: 86478 attctgcctatcacccctagttcca 86454
>ref|XM_460720.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F09163g) partial mRNA Length = 1053 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 cttctttaagcctcttgat 51 ||||||||||||||||||| Sbjct: 1005 cttctttaagcctcttgat 987
>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces hansenii Length = 2336804 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 cttctttaagcctcttgat 51 ||||||||||||||||||| Sbjct: 728535 cttctttaagcctcttgat 728553 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 585,130 Number of Sequences: 3902068 Number of extensions: 585130 Number of successful extensions: 38695 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38664 Number of HSP's gapped (non-prelim): 31 length of query: 113 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 92 effective length of database: 17,151,101,840 effective search space: 1577901369280 effective search space used: 1577901369280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)