| Clone Name | rbags33j16 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK067286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013101A22, full insert sequence Length = 622 Score = 341 bits (172), Expect = 2e-90 Identities = 307/352 (87%) Strand = Plus / Minus Query: 170 catcaacctttagttcttcacagtggtgacgtgcctcagaagcatctgaatcacctctgg 229 |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || || Sbjct: 383 catcaacccttagttcttcacagtggtgacatgcctcagaagcatctgaatcacttcagg 324 Query: 230 ggagatgtttgctgcctgctgcttgagctgttcaatttttacgtttgtctcttgctcaag 289 |||||| |||| |||||||||||||| ||| | |||||| | |||||| |||||||| Sbjct: 323 ggagatacttgcagcctgctgcttgagttgtgcgattttttccgctgtctcctgctcaag 264 Query: 290 gcgtttgacatttgcaccagagtcaccgctggtctcggtgagctttctctggaaatcagc 349 || |||||||||||||||||||||||||| |||| | | ||| ||||| || ||||| Sbjct: 263 acgcttgacatttgcaccagagtcaccgctactctctgcaaccttcctctgaaattcagc 204 Query: 350 ctccatctgcgcacggtactcagctatctctctctccgcctcttcttttgctttcctaag 409 ||||||||| |||||||| |||||||| || ||||| ||||| |||||||||| |||||| Sbjct: 203 ctccatctgggcacggtattcagctatttccctctcagcctcctcttttgcttgcctaag 144 Query: 410 ccttgccgttttagcagccctggcagcatttacaatttgctgagcatcttgctctgcagc 469 |||||||| ||| |||||||| ||||||||||| ||||||||||| |||||||||||||| Sbjct: 143 ccttgccgattttgcagccctagcagcatttactatttgctgagcctcttgctctgcagc 84 Query: 470 aagcaattgctggattccacttgggcgcctgcttgcgtccatgtttgggctg 521 | ||||||||||||||||||| |||| ||| |||||||||| |||| |||| Sbjct: 83 caacaattgctggattccactttggcgtctgtttgcgtccatctttgtgctg 32
>dbj|AK059032.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-C05, full insert sequence Length = 652 Score = 333 bits (168), Expect = 4e-88 Identities = 306/352 (86%) Strand = Plus / Minus Query: 170 catcaacctttagttcttcacagtggtgacgtgcctcagaagcatctgaatcacctctgg 229 |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || || Sbjct: 416 catcaacccttagttcttcacagtggtgacatgcctcagaagcatctgaatcacttcagg 357 Query: 230 ggagatgtttgctgcctgctgcttgagctgttcaatttttacgtttgtctcttgctcaag 289 |||||| |||| |||||||||||||| ||| | |||||| | |||||| |||||||| Sbjct: 356 ggagatacttgcagcctgctgcttgagttgtgcgattttttccgctgtctcctgctcaag 297 Query: 290 gcgtttgacatttgcaccagagtcaccgctggtctcggtgagctttctctggaaatcagc 349 || |||||||||||||||||||||||||| |||| | | ||| ||||| || ||||| Sbjct: 296 acgcttgacatttgcaccagagtcaccgctactctctgcaaccttcctctgaaattcagc 237 Query: 350 ctccatctgcgcacggtactcagctatctctctctccgcctcttcttttgctttcctaag 409 ||||||||| |||||||| |||||||| || ||||| ||||| |||||||||| |||||| Sbjct: 236 ctccatctgggcacggtattcagctatttccctctcagcctcctcttttgcttgcctaag 177 Query: 410 ccttgccgttttagcagccctggcagcatttacaatttgctgagcatcttgctctgcagc 469 |||||||| ||| |||||||| ||||||||||| ||||||||||| ||||||||||||| Sbjct: 176 ccttgccgattttgcagccctagcagcatttactatttgctgagccccttgctctgcagc 117 Query: 470 aagcaattgctggattccacttgggcgcctgcttgcgtccatgtttgggctg 521 | ||||||||||||||||||| |||| ||| |||||||||| |||| |||| Sbjct: 116 caacaattgctggattccactttggcgtctgtttgcgtccatctttgtgctg 65
>ref|XM_473769.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 333 Score = 327 bits (165), Expect = 2e-86 Identities = 291/333 (87%) Strand = Plus / Minus Query: 179 ttagttcttcacagtggtgacgtgcctcagaagcatctgaatcacctctggggagatgtt 238 ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| | Sbjct: 333 ttagttcttcacagtggtgacatgcctcagaagcatctgaatcacttcaggggagatact 274 Query: 239 tgctgcctgctgcttgagctgttcaatttttacgtttgtctcttgctcaaggcgtttgac 298 ||| |||||||||||||| ||| | |||||| | |||||| |||||||| || ||||| Sbjct: 273 tgcagcctgctgcttgagttgtgcgattttttccgctgtctcctgctcaagacgcttgac 214 Query: 299 atttgcaccagagtcaccgctggtctcggtgagctttctctggaaatcagcctccatctg 358 ||||||||||||||||||||| |||| | | ||| ||||| || |||||||||||||| Sbjct: 213 atttgcaccagagtcaccgctactctctgcaaccttcctctgaaattcagcctccatctg 154 Query: 359 cgcacggtactcagctatctctctctccgcctcttcttttgctttcctaagccttgccgt 418 |||||||| |||||||| || ||||| ||||| |||||||||| |||||||||||||| Sbjct: 153 ggcacggtattcagctatttccctctcagcctcctcttttgcttgcctaagccttgccga 94 Query: 419 tttagcagccctggcagcatttacaatttgctgagcatcttgctctgcagcaagcaattg 478 ||| |||||||| ||||||||||| ||||||||||| |||||||||||||| | |||||| Sbjct: 93 ttttgcagccctagcagcatttactatttgctgagcctcttgctctgcagccaacaattg 34 Query: 479 ctggattccacttgggcgcctgcttgcgtccat 511 ||||||||||||| |||| ||| |||||||||| Sbjct: 33 ctggattccactttggcgtctgtttgcgtccat 1
>gb|AY108236.1| Zea mays PCO086968 mRNA sequence Length = 750 Score = 244 bits (123), Expect = 3e-61 Identities = 279/331 (84%) Strand = Plus / Minus Query: 181 agttcttcacagtggtgacgtgcctcagaagcatctgaatcacctctggggagatgtttg 240 |||||||||| |||||||| |||||||||||||||||||| || |||||||||||| ||| Sbjct: 477 agttcttcacggtggtgacatgcctcagaagcatctgaatgacatctggggagatgcttg 418 Query: 241 ctgcctgctgcttgagctgttcaatttttacgtttgtctcttgctcaaggcgtttgacat 300 | |||||||| ||||||||||| ||||| | ||||||||| ||| || || ||||| | Sbjct: 417 cagcctgctggttgagctgttcgattttcgccgttgtctcttcctcgagacgcttgacgt 358 Query: 301 ttgcaccagagtcaccgctggtctcggtgagctttctctggaaatcagcctccatctgcg 360 | |||||||||||||| ||| |||| | || ||| |||||||| |||||||||||||| | Sbjct: 357 tcgcaccagagtcaccactgctctctgcgaccttcctctggaactcagcctccatctggg 298 Query: 361 cacggtactcagctatctctctctccgcctcttcttttgctttcctaagccttgccgttt 420 ||||||| || ||||| || ||||| ||||| ||||| |||| |||||||||||| | | Sbjct: 297 cacggtattcggctatttccctctctgcctcctctttcgcttgcctaagccttgctgact 238 Query: 421 tagcagccctggcagcatttacaatttgctgagcatcttgctctgcagcaagcaattgct 480 ||||||| || || ||||| |||||||||||||| || ||||| ||||| ||||| |||| Sbjct: 237 tagcagctctagccgcattcacaatttgctgagcctcctgctccgcagccagcaactgct 178 Query: 481 ggattccacttgggcgcctgcttgcgtccat 511 | || |||| | |||||||| | |||||||| Sbjct: 177 gaatcccaccttggcgcctgttggcgtccat 147
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence Length = 166804 Score = 163 bits (82), Expect = 8e-37 Identities = 133/150 (88%) Strand = Plus / Plus Query: 170 catcaacctttagttcttcacagtggtgacgtgcctcagaagcatctgaatcacctctgg 229 |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || || Sbjct: 42331 catcaacccttagttcttcacagtggtgacatgcctcagaagcatctgaatcacttcagg 42390 Query: 230 ggagatgtttgctgcctgctgcttgagctgttcaatttttacgtttgtctcttgctcaag 289 |||||| |||| |||||||||||||| ||| | |||||| | |||||| |||||||| Sbjct: 42391 ggagatacttgcagcctgctgcttgagttgtgcgattttttccgctgtctcctgctcaag 42450 Query: 290 gcgtttgacatttgcaccagagtcaccgct 319 || |||||||||||||||||||||||||| Sbjct: 42451 acgcttgacatttgcaccagagtcaccgct 42480 Score = 115 bits (58), Expect = 2e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 424 cagccctggcagcatttacaatttgctgagcatcttgctctgcagcaagcaattgctgga 483 ||||||| ||||||||||| ||||||||||| |||||||||||||| | ||||||||||| Sbjct: 43111 cagccctagcagcatttactatttgctgagcctcttgctctgcagccaacaattgctgga 43170 Query: 484 ttccacttgggcgcctgcttgcgtccatgtttgggctg 521 |||||||| |||| ||| |||||||||| |||| |||| Sbjct: 43171 ttccactttggcgtctgtttgcgtccatctttgtgctg 43208 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 336 ctctggaaatcagcctccatctgcgcacggtactcagctatctctctctccgcctcttct 395 ||||| || |||||||||||||| |||||||| |||||||| || ||||| ||||| ||| Sbjct: 42595 ctctgaaattcagcctccatctgggcacggtattcagctatttccctctcagcctcctct 42654 Query: 396 tttgctttcctaagccttgccg 417 ||||||| |||||||||||||| Sbjct: 42655 tttgcttgcctaagccttgccg 42676
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 163 bits (82), Expect = 8e-37 Identities = 133/150 (88%) Strand = Plus / Plus Query: 170 catcaacctttagttcttcacagtggtgacgtgcctcagaagcatctgaatcacctctgg 229 |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || || Sbjct: 30408953 catcaacccttagttcttcacagtggtgacatgcctcagaagcatctgaatcacttcagg 30409012 Query: 230 ggagatgtttgctgcctgctgcttgagctgttcaatttttacgtttgtctcttgctcaag 289 |||||| |||| |||||||||||||| ||| | |||||| | |||||| |||||||| Sbjct: 30409013 ggagatacttgcagcctgctgcttgagttgtgcgattttttccgctgtctcctgctcaag 30409072 Query: 290 gcgtttgacatttgcaccagagtcaccgct 319 || |||||||||||||||||||||||||| Sbjct: 30409073 acgcttgacatttgcaccagagtcaccgct 30409102 Score = 115 bits (58), Expect = 2e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 424 cagccctggcagcatttacaatttgctgagcatcttgctctgcagcaagcaattgctgga 483 ||||||| ||||||||||| ||||||||||| |||||||||||||| | ||||||||||| Sbjct: 30409733 cagccctagcagcatttactatttgctgagcctcttgctctgcagccaacaattgctgga 30409792 Query: 484 ttccacttgggcgcctgcttgcgtccatgtttgggctg 521 |||||||| |||| ||| |||||||||| |||| |||| Sbjct: 30409793 ttccactttggcgtctgtttgcgtccatctttgtgctg 30409830 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 336 ctctggaaatcagcctccatctgcgcacggtactcagctatctctctctccgcctcttct 395 ||||| || |||||||||||||| |||||||| |||||||| || ||||| ||||| ||| Sbjct: 30409217 ctctgaaattcagcctccatctgggcacggtattcagctatttccctctcagcctcctct 30409276 Query: 396 tttgctttcctaagccttgccg 417 ||||||| |||||||||||||| Sbjct: 30409277 tttgcttgcctaagccttgccg 30409298
>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12, complete sequence Length = 160989 Score = 163 bits (82), Expect = 8e-37 Identities = 133/150 (88%) Strand = Plus / Plus Query: 170 catcaacctttagttcttcacagtggtgacgtgcctcagaagcatctgaatcacctctgg 229 |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || || Sbjct: 158849 catcaacccttagttcttcacagtggtgacatgcctcagaagcatctgaatcacttcagg 158908 Query: 230 ggagatgtttgctgcctgctgcttgagctgttcaatttttacgtttgtctcttgctcaag 289 |||||| |||| |||||||||||||| ||| | |||||| | |||||| |||||||| Sbjct: 158909 ggagatacttgcagcctgctgcttgagttgtgcgattttttccgctgtctcctgctcaag 158968 Query: 290 gcgtttgacatttgcaccagagtcaccgct 319 || |||||||||||||||||||||||||| Sbjct: 158969 acgcttgacatttgcaccagagtcaccgct 158998 Score = 115 bits (58), Expect = 2e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 424 cagccctggcagcatttacaatttgctgagcatcttgctctgcagcaagcaattgctgga 483 ||||||| ||||||||||| ||||||||||| |||||||||||||| | ||||||||||| Sbjct: 159629 cagccctagcagcatttactatttgctgagcctcttgctctgcagccaacaattgctgga 159688 Query: 484 ttccacttgggcgcctgcttgcgtccatgtttgggctg 521 |||||||| |||| ||| |||||||||| |||| |||| Sbjct: 159689 ttccactttggcgtctgtttgcgtccatctttgtgctg 159726 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 336 ctctggaaatcagcctccatctgcgcacggtactcagctatctctctctccgcctcttct 395 ||||| || |||||||||||||| |||||||| |||||||| || ||||| ||||| ||| Sbjct: 159113 ctctgaaattcagcctccatctgggcacggtattcagctatttccctctcagcctcctct 159172 Query: 396 tttgctttcctaagccttgccg 417 ||||||| |||||||||||||| Sbjct: 159173 tttgcttgcctaagccttgccg 159194
>ref|XM_467332.1| Oryza sativa (japonica cultivar-group), mRNA Length = 525 Score = 135 bits (68), Expect = 2e-28 Identities = 182/220 (82%) Strand = Plus / Minus Query: 181 agttcttcacagtggtgacgtgcctcagaagcatctgaatcacctctggggagatgtttg 240 |||||||||| ||||| || ||||| ||||||||||| ||||| || ||||||| |||| Sbjct: 523 agttcttcacggtggttacatgcctaagaagcatctggatcacttcaggggagacatttg 464 Query: 241 ctgcctgctgcttgagctgttcaatttttacgtttgtctcttgctcaaggcgtttgacat 300 | ||||||| ||| || || ||||||| || || ||||||||||| ||||| || | Sbjct: 463 cagcctgctccttcagttgcgcaattttcgtgtcagtttcttgctcaagccgttttacgt 404 Query: 301 ttgcaccagagtcaccgctggtctcggtgagctttctctggaaatcagcctccatctgcg 360 |||||||||| |||||||| |||| | | ||| |||||||| ||||| |||||||| | Sbjct: 403 ttgcaccagaatcaccgctactctccgcaaccttcctctggaactcagcttccatctgag 344 Query: 361 cacggtactcagctatctctctctccgcctcttcttttgc 400 |||||||||||||||| |||||||| ||||| |||||||| Sbjct: 343 cacggtactcagctatttctctctcagcctcctcttttgc 304 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 432 gcagcatttacaatttgctgagcatcttgctctgcagcaagcaattgctggattccac 489 |||||||| ||||| || ||||| |||||||||||||| | |||||||| ||||||| Sbjct: 295 gcagcattaacaatctgttgagcttcttgctctgcagccaataattgctgaattccac 238
>gb|AY103882.1| Zea mays PCO130190 mRNA sequence Length = 760 Score = 125 bits (63), Expect = 2e-25 Identities = 264/331 (79%) Strand = Plus / Minus Query: 181 agttcttcacagtggtgacgtgcctcagaagcatctgaatcacctctggggagatgtttg 240 ||||||| || |||||||| |||| ||||||||||||||| || || ||||||||| ||| Sbjct: 472 agttcttgacggtggtgacatgccgcagaagcatctgaatgacatccggggagatgcttg 413 Query: 241 ctgcctgctgcttgagctgttcaatttttacgtttgtctcttgctcaaggcgtttgacat 300 |||||||| |||| || || || || | || |||| ||| || || ||||| | Sbjct: 412 tggcctgctgggtgagttgctcgatcttcgccgccgtttcttcctcgagacgcttgacgt 353 Query: 301 ttgcaccagagtcaccgctggtctcggtgagctttctctggaaatcagcctccatctgcg 360 ||||||| ||||| |||||| |||| | | ||| ||||| || |||||||||||||| | Sbjct: 352 ttgcaccggagtcgccgctgctctctgcaaccttcctctgaaactcagcctccatctggg 293 Query: 361 cacggtactcagctatctctctctccgcctcttcttttgctttcctaagccttgccgttt 420 ||||||| || ||||| || | ||| ||||| |||||||||| ||| ||||| || | | Sbjct: 292 cacggtattcggctatttcccgctcagcctcctcttttgcttgcctgagcctcgctgact 233 Query: 421 tagcagccctggcagcatttacaatttgctgagcatcttgctctgcagcaagcaattgct 480 | ||||| || || ||||| |||||||||||||| || ||||| ||||| ||||| |||| Sbjct: 232 tggcagctctagcggcattcacaatttgctgagcctcctgctccgcagccagcaactgct 173 Query: 481 ggattccacttgggcgcctgcttgcgtccat 511 |||| ||||| |||||||| | |||||||| Sbjct: 172 ggatcccactctggcgcctgttcgcgtccat 142
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 336 ctctggaaatcagcctccatctgcgcacggtactcagctatctctctctccgcctcttct 395 |||||||| ||||| |||||||| ||||||||||||||||| |||||||| ||||| ||| Sbjct: 28917497 ctctggaactcagcttccatctgagcacggtactcagctatttctctctcagcctcctct 28917556 Query: 396 tttgc 400 ||||| Sbjct: 28917557 tttgc 28917561 Score = 77.8 bits (39), Expect = 4e-11 Identities = 114/139 (82%) Strand = Plus / Plus Query: 181 agttcttcacagtggtgacgtgcctcagaagcatctgaatcacctctggggagatgtttg 240 |||||||||| ||||| || ||||| ||||||||||| ||||| || ||||||| |||| Sbjct: 28917267 agttcttcacggtggttacatgcctaagaagcatctggatcacttcaggggagacatttg 28917326 Query: 241 ctgcctgctgcttgagctgttcaatttttacgtttgtctcttgctcaaggcgtttgacat 300 | ||||||| ||| || || ||||||| || || ||||||||||| ||||| || | Sbjct: 28917327 cagcctgctccttcagttgcgcaattttcgtgtcagtttcttgctcaagccgttttacgt 28917386 Query: 301 ttgcaccagagtcaccgct 319 |||||||||| |||||||| Sbjct: 28917387 ttgcaccagaatcaccgct 28917405 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 432 gcagcatttacaatttgctgagcatcttgctctgcagcaagcaattgctggattccac 489 |||||||| ||||| || ||||| |||||||||||||| | |||||||| ||||||| Sbjct: 28918268 gcagcattaacaatctgttgagcttcttgctctgcagccaataattgctgaattccac 28918325
>dbj|AP003994.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1111_E07 Length = 123613 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 336 ctctggaaatcagcctccatctgcgcacggtactcagctatctctctctccgcctcttct 395 |||||||| ||||| |||||||| ||||||||||||||||| |||||||| ||||| ||| Sbjct: 110189 ctctggaactcagcttccatctgagcacggtactcagctatttctctctcagcctcctct 110248 Query: 396 tttgc 400 ||||| Sbjct: 110249 tttgc 110253 Score = 77.8 bits (39), Expect = 4e-11 Identities = 114/139 (82%) Strand = Plus / Plus Query: 181 agttcttcacagtggtgacgtgcctcagaagcatctgaatcacctctggggagatgtttg 240 |||||||||| ||||| || ||||| ||||||||||| ||||| || ||||||| |||| Sbjct: 109959 agttcttcacggtggttacatgcctaagaagcatctggatcacttcaggggagacatttg 110018 Query: 241 ctgcctgctgcttgagctgttcaatttttacgtttgtctcttgctcaaggcgtttgacat 300 | ||||||| ||| || || ||||||| || || ||||||||||| ||||| || | Sbjct: 110019 cagcctgctccttcagttgcgcaattttcgtgtcagtttcttgctcaagccgttttacgt 110078 Query: 301 ttgcaccagagtcaccgct 319 |||||||||| |||||||| Sbjct: 110079 ttgcaccagaatcaccgct 110097 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 432 gcagcatttacaatttgctgagcatcttgctctgcagcaagcaattgctggattccac 489 |||||||| ||||| || ||||| |||||||||||||| | |||||||| ||||||| Sbjct: 110960 gcagcattaacaatctgttgagcttcttgctctgcagccaataattgctgaattccac 111017
>dbj|AP004052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1218_D07 Length = 114511 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 336 ctctggaaatcagcctccatctgcgcacggtactcagctatctctctctccgcctcttct 395 |||||||| ||||| |||||||| ||||||||||||||||| |||||||| ||||| ||| Sbjct: 555 ctctggaactcagcttccatctgagcacggtactcagctatttctctctcagcctcctct 614 Query: 396 tttgc 400 ||||| Sbjct: 615 tttgc 619 Score = 77.8 bits (39), Expect = 4e-11 Identities = 114/139 (82%) Strand = Plus / Plus Query: 181 agttcttcacagtggtgacgtgcctcagaagcatctgaatcacctctggggagatgtttg 240 |||||||||| ||||| || ||||| ||||||||||| ||||| || ||||||| |||| Sbjct: 325 agttcttcacggtggttacatgcctaagaagcatctggatcacttcaggggagacatttg 384 Query: 241 ctgcctgctgcttgagctgttcaatttttacgtttgtctcttgctcaaggcgtttgacat 300 | ||||||| ||| || || ||||||| || || ||||||||||| ||||| || | Sbjct: 385 cagcctgctccttcagttgcgcaattttcgtgtcagtttcttgctcaagccgttttacgt 444 Query: 301 ttgcaccagagtcaccgct 319 |||||||||| |||||||| Sbjct: 445 ttgcaccagaatcaccgct 463 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 432 gcagcatttacaatttgctgagcatcttgctctgcagcaagcaattgctggattccac 489 |||||||| ||||| || ||||| |||||||||||||| | |||||||| ||||||| Sbjct: 1326 gcagcattaacaatctgttgagcttcttgctctgcagccaataattgctgaattccac 1383
>emb|AJ005900.1|NTA005900 Nicotiana tabacum mRNA for V-ATPase subunit G (vag2 gene) Length = 552 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 279 tcttgctcaaggcgtttgacatttgcaccagagtcaccgctggtct 324 ||||||||||||||||||||||| ||||| || |||||||| |||| Sbjct: 311 tcttgctcaaggcgtttgacattagcacccgaatcaccgctagtct 266 Score = 40.1 bits (20), Expect = 8.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 428 cctggcagcatttacaatttgctgagcatcttgctctgca 467 |||||||||||| || || || ||||| |||||||||||| Sbjct: 162 cctggcagcattgactatatgttgagcttcttgctctgca 123
>gb|DQ284486.1| Solanum tuberosum clone 020G11 ATPase-like mRNA, complete cds Length = 716 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 178 tttagttcttcacagtggtgacgtgcctcagaagcat 214 ||||||||||||| ||||| ||||||||||||||||| Sbjct: 377 tttagttcttcactgtggttacgtgcctcagaagcat 341 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 284 ctcaaggcgtttgacatttgcaccagagtcaccgctggtctcggtgagctttctctggaa 343 |||||| ||||||||||| ||||| |||||||| || |||| ||||||||||| || Sbjct: 271 ctcaagacgtttgacattagcacctgagtcaccactagtctgttcaagctttctctgaaa 212 Query: 344 atcagcctccatctgcgcacggtactcagctatctc 379 ||||||||||| | |||||| | ||||||||||| Sbjct: 211 ttcagcctccatgtaagcacggaattcagctatctc 176
>emb|AJ005899.1|NTA005899 Nicotiana tabacum mRNA for V-ATPase subunit G (vag1 gene) Length = 807 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 179 ttagttcttcacagtggtgacgtgcctcagaagcatctg 217 |||||||||||| ||||| ||||||||||| |||||||| Sbjct: 384 ttagttcttcactgtggttacgtgcctcaggagcatctg 346 Score = 50.1 bits (25), Expect = 0.008 Identities = 82/101 (81%) Strand = Plus / Minus Query: 279 tcttgctcaaggcgtttgacatttgcaccagagtcaccgctggtctcggtgagctttctc 338 ||||||||||| ||||||||||| || || |||||||| || |||| ||||||||| Sbjct: 284 tcttgctcaagacgtttgacattagcgcccgagtcaccactagtctgttcaagctttctc 225 Query: 339 tggaaatcagcctccatctgcgcacggtactcagctatctc 379 || || ||||||||||| | ||||| | ||||||||||| Sbjct: 224 tgaaactcagcctccatgtaagcacgaaattcagctatctc 184
>dbj|AK068212.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146D16, full insert sequence Length = 1366 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 432 gcagcatttacaatttgctgagcatcttgctctgcagcaagcaattgctggattccac 489 |||||||| ||||| || ||||| |||||||||||||| | |||||||| ||||||| Sbjct: 1126 gcagcattaacaatctgttgagcttcttgctctgcagccaataattgctgaattccac 1069
>emb|AJ879064.1| Capsicum chinense mRNA for ATPase Length = 617 Score = 50.1 bits (25), Expect = 0.008 Identities = 79/97 (81%) Strand = Plus / Minus Query: 283 gctcaaggcgtttgacatttgcaccagagtcaccgctggtctcggtgagctttctctgga 342 ||||||| ||||||||||| ||||| |||||||| || |||| ||||||||||| | Sbjct: 294 gctcaagccgtttgacattagcacctgagtcaccactagtctgttcaagctttctctgaa 235 Query: 343 aatcagcctccatctgcgcacggtactcagctatctc 379 | || |||||||| | |||||| | ||||||||||| Sbjct: 234 actcggcctccatgtaagcacggaattcagctatctc 198 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Minus Query: 179 ttagttcttcacagtggtgacgtgcctcagaagcatct 216 |||||||||||| || || || |||||||||||||||| Sbjct: 398 ttagttcttcactgtcgttacatgcctcagaagcatct 361
>gb|AY149472.1| Acinetobacter baumannii strain 8399 siderophore and iron transport locus, complete sequence Length = 21931 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 246 tgctgcttgagctgttcaattttt 269 |||||||||||||||||||||||| Sbjct: 3151 tgctgcttgagctgttcaattttt 3128
>gb|AC128638.34| Medicago truncatula clone mth2-36h10, complete sequence Length = 110895 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 276 gtctcttgctcaaggcgtttgacatttgcaccaga 310 |||||||||||||| || |||||||| |||||||| Sbjct: 73 gtctcttgctcaagtcgcttgacattagcaccaga 39
>gb|AC148995.2| Medicago truncatula chromosome 7 BAC clone mth2-49l23, complete sequence Length = 128239 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 276 gtctcttgctcaaggcgtttgacatttgcaccaga 310 |||||||||||||| || |||||||| |||||||| Sbjct: 102436 gtctcttgctcaagtcgcttgacattagcaccaga 102402
>ref|NM_118502.2| Arabidopsis thaliana unknown protein AT4G23710 mRNA, complete cds Length = 697 Score = 44.1 bits (22), Expect = 0.51 Identities = 43/50 (86%) Strand = Plus / Minus Query: 435 gcatttacaatttgctgagcatcttgctctgcagcaagcaattgctggat 484 ||||| |||||||||||||| || | || |||||||||| ||||||||| Sbjct: 171 gcattgacaatttgctgagcttcacgttcagcagcaagcagttgctggat 122
>ref|NM_180158.2| Arabidopsis thaliana VMA10 (VACUOLAR MEMBRANE ATPASE 10) AT3G01390 (VMA10) transcript variant AT3G01390.2 mRNA, complete cds Length = 834 Score = 44.1 bits (22), Expect = 0.51 Identities = 88/110 (80%) Strand = Plus / Minus Query: 375 atctctctctccgcctcttcttttgctttcctaagccttgccgttttagcagccctggca 434 |||||| |||| |||||||| || |||| | | || |||||| |||| || | ||| ||| Sbjct: 377 atctctttctctgcctcttccttagcttgcttcagtcttgccatttttgcggtccttgca 318 Query: 435 gcatttacaatttgctgagcatcttgctctgcagcaagcaattgctggat 484 ||||| ||||| || ||||| ||| ||| ||||||||||| || ||||| Sbjct: 317 gcattgacaatgtgttgagcttctacctcagcagcaagcaactgttggat 268
>ref|NM_111005.3| Arabidopsis thaliana VMA10 (VACUOLAR MEMBRANE ATPASE 10) AT3G01390 (VMA10) transcript variant AT3G01390.1 mRNA, complete cds Length = 665 Score = 44.1 bits (22), Expect = 0.51 Identities = 88/110 (80%) Strand = Plus / Minus Query: 375 atctctctctccgcctcttcttttgctttcctaagccttgccgttttagcagccctggca 434 |||||| |||| |||||||| || |||| | | || |||||| |||| || | ||| ||| Sbjct: 208 atctctttctctgcctcttccttagcttgcttcagtcttgccatttttgcggtccttgca 149 Query: 435 gcatttacaatttgctgagcatcttgctctgcagcaagcaattgctggat 484 ||||| ||||| || ||||| ||| ||| ||||||||||| || ||||| Sbjct: 148 gcattgacaatgtgttgagcttctacctcagcagcaagcaactgttggat 99
>emb|AL627308.20| Human DNA sequence from clone RP11-211A18 on chromosome 1 Contains the 5' end of the CDC42BPA gene for CDC42 binding protein kinase alpha (DMPK-like), a cathepsin B (CTSB) pseudogene, a novel pseudogene and a CpG island, complete sequence Length = 124156 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 74 attacagctggaagtggcaaaa 95 |||||||||||||||||||||| Sbjct: 3899 attacagctggaagtggcaaaa 3878
>emb|AL161560.2|ATCHRIV60 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 60 Length = 196677 Score = 44.1 bits (22), Expect = 0.51 Identities = 43/50 (86%) Strand = Plus / Minus Query: 435 gcatttacaatttgctgagcatcttgctctgcagcaagcaattgctggat 484 ||||| |||||||||||||| || | || |||||||||| ||||||||| Sbjct: 10025 gcattgacaatttgctgagcttcacgttcagcagcaagcagttgctggat 9976
>emb|AL035394.1|ATF9D16 Arabidopsis thaliana DNA chromosome 4, BAC clone F9D16 (ESSAII project) Length = 119430 Score = 44.1 bits (22), Expect = 0.51 Identities = 43/50 (86%) Strand = Plus / Minus Query: 435 gcatttacaatttgctgagcatcttgctctgcagcaagcaattgctggat 484 ||||| |||||||||||||| || | || |||||||||| ||||||||| Sbjct: 68434 gcattgacaatttgctgagcttcacgttcagcagcaagcagttgctggat 68385
>gb|AY114730.1| Arabidopsis thaliana vacuolar membrane ATPase subunit G AVMA10 (At3g01390) mRNA, complete cds Length = 536 Score = 44.1 bits (22), Expect = 0.51 Identities = 88/110 (80%) Strand = Plus / Minus Query: 375 atctctctctccgcctcttcttttgctttcctaagccttgccgttttagcagccctggca 434 |||||| |||| |||||||| || |||| | | || |||||| |||| || | ||| ||| Sbjct: 137 atctctttctctgcctcttccttagcttgcttcagtcttgccatttttgcggtccttgca 78 Query: 435 gcatttacaatttgctgagcatcttgctctgcagcaagcaattgctggat 484 ||||| ||||| || ||||| ||| ||| ||||||||||| || ||||| Sbjct: 77 gcattgacaatgtgttgagcttctacctcagcagcaagcaactgttggat 28
>gb|AY072365.1| Arabidopsis thaliana vacuolar membrane ATPase subunit G (AVMA10) (At3g01390) mRNA, complete cds Length = 654 Score = 44.1 bits (22), Expect = 0.51 Identities = 88/110 (80%) Strand = Plus / Minus Query: 375 atctctctctccgcctcttcttttgctttcctaagccttgccgttttagcagccctggca 434 |||||| |||| |||||||| || |||| | | || |||||| |||| || | ||| ||| Sbjct: 208 atctctttctctgcctcttccttagcttgcttcagtcttgccatttttgcggtccttgca 149 Query: 435 gcatttacaatttgctgagcatcttgctctgcagcaagcaattgctggat 484 ||||| ||||| || ||||| ||| ||| ||||||||||| || ||||| Sbjct: 148 gcattgacaatgtgttgagcttctacctcagcagcaagcaactgttggat 99
>emb|BX825355.1|CNS0A6BQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL31ZE11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 613 Score = 44.1 bits (22), Expect = 0.51 Identities = 88/110 (80%) Strand = Plus / Minus Query: 375 atctctctctccgcctcttcttttgctttcctaagccttgccgttttagcagccctggca 434 |||||| |||| |||||||| || |||| | | || |||||| |||| || | ||| ||| Sbjct: 157 atctctttctctgcctcttccttagcttgcttcagtcttgccatttttgcggtccttgca 98 Query: 435 gcatttacaatttgctgagcatcttgctctgcagcaagcaattgctggat 484 ||||| ||||| || ||||| ||| ||| ||||||||||| || ||||| Sbjct: 97 gcattgacaatgtgttgagcttctacctcagcagcaagcaactgttggat 48
>gb|BT003107.1| Arabidopsis thaliana At4g23710 mRNA, complete cds Length = 321 Score = 44.1 bits (22), Expect = 0.51 Identities = 43/50 (86%) Strand = Plus / Minus Query: 435 gcatttacaatttgctgagcatcttgctctgcagcaagcaattgctggat 484 ||||| |||||||||||||| || | || |||||||||| ||||||||| Sbjct: 65 gcattgacaatttgctgagcttcacgttcagcagcaagcagttgctggat 16
>emb|AJ005901.1|ATA005901 Arabidopsis thaliana mRNA for V-ATPase subunit G (vag1 gene) Length = 528 Score = 44.1 bits (22), Expect = 0.51 Identities = 88/110 (80%) Strand = Plus / Minus Query: 375 atctctctctccgcctcttcttttgctttcctaagccttgccgttttagcagccctggca 434 |||||| |||| |||||||| || |||| | | || |||||| |||| || | ||| ||| Sbjct: 175 atctctttctctgcctcttccttagcttgcttcagtcttgccatttttgcggtccttgca 116 Query: 435 gcatttacaatttgctgagcatcttgctctgcagcaagcaattgctggat 484 ||||| ||||| || ||||| ||| ||| ||||||||||| || ||||| Sbjct: 115 gcattgacaatgtgttgagcttctacctcagcagcaagcaactgttggat 66
>gb|AF184068.1|AF184068 Citrus limon vacuolar membrane ATPase subunit G (LVMA10) mRNA, complete cds Length = 500 Score = 44.1 bits (22), Expect = 0.51 Identities = 121/154 (78%) Strand = Plus / Minus Query: 336 ctctggaaatcagcctccatctgcgcacggtactcagctatctctctctccgcctcttct 395 |||||||| ||| ||||| ||| || || || ||||| ||||| || || ||||||||| Sbjct: 266 ctctggaactcacgctccacctgagctcgatattcagcaatctccctttcagcctcttct 207 Query: 396 tttgctttcctaagccttgccgttttagcagccctggcagcatttacaatttgctgagca 455 || |||| | | || || ||| |||| ||| ||||||||| ||||| || ||||| Sbjct: 206 ttggcttgcttcagtctagccatttttgcatttctggcagcagcaacaatgtgttgagct 147 Query: 456 tcttgctctgcagcaagcaattgctggattccac 489 ||||| || ||||| ||||||||||| ||||||| Sbjct: 146 tcttgttcagcagccagcaattgctgaattccac 113
>gb|AF181688.1|AF181688 Arabidopsis thaliana vacuolar membrane ATPase subunit G (AVMA10) mRNA, complete cds Length = 652 Score = 44.1 bits (22), Expect = 0.51 Identities = 88/110 (80%) Strand = Plus / Minus Query: 375 atctctctctccgcctcttcttttgctttcctaagccttgccgttttagcagccctggca 434 |||||| |||| |||||||| || |||| | | || |||||| |||| || | ||| ||| Sbjct: 179 atctctttctctgcctcttccttagcttgcttcagtcttgccatttttgcggtccttgca 120 Query: 435 gcatttacaatttgctgagcatcttgctctgcagcaagcaattgctggat 484 ||||| ||||| || ||||| ||| ||| ||||||||||| || ||||| Sbjct: 119 gcattgacaatgtgttgagcttctacctcagcagcaagcaactgttggat 70
>emb|CR715651.2|CNS0GF5B Tetraodon nigroviridis full-length cDNA Length = 1034 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 333 tttctctggaaatcagcctcc 353 ||||||||||||||||||||| Sbjct: 872 tttctctggaaatcagcctcc 852
>gb|AC099558.2| Homo sapiens chromosome 3 clone RP11-680P23, complete sequence Length = 180049 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 agcagccctggcagcatttac 442 ||||||||||||||||||||| Sbjct: 56532 agcagccctggcagcatttac 56512
>gb|AC092636.3| Homo sapiens BAC clone RP11-353K11 from 2, complete sequence Length = 199721 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 334 ttctctggaaatcagcctcca 354 ||||||||||||||||||||| Sbjct: 149878 ttctctggaaatcagcctcca 149858
>gb|AC114480.2| Homo sapiens chromosome 3 clone RP11-755B10, complete sequence Length = 196773 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 agcagccctggcagcatttac 442 ||||||||||||||||||||| Sbjct: 134666 agcagccctggcagcatttac 134646
>gb|AC140658.2| Homo sapiens chromosome 16 clone RP11-812E19, complete sequence Length = 188406 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 ggaaatcagcctccatctgc 359 |||||||||||||||||||| Sbjct: 170335 ggaaatcagcctccatctgc 170354
>gb|AC125225.4| Mus musculus BAC clone RP23-36I17 from 6, complete sequence Length = 215406 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 cctggcagcatttacaattt 447 |||||||||||||||||||| Sbjct: 1943 cctggcagcatttacaattt 1962
>gb|AC121867.2| Mus musculus BAC clone RP24-115M7 from 6, complete sequence Length = 165179 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 cctggcagcatttacaattt 447 |||||||||||||||||||| Sbjct: 21758 cctggcagcatttacaattt 21739
>gb|AC119831.6| Mus musculus chromosome 9, clone RP23-281F13, complete sequence Length = 195918 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 214 tctgaatcacctctggggagatgt 237 ||||| |||||||||||||||||| Sbjct: 170727 tctgagtcacctctggggagatgt 170750
>gb|AC166997.1| Mus musculus BAC clone RP23-107H9 from chromosome 14, complete sequence Length = 201316 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ctgcctgctgcttgagctgt 260 |||||||||||||||||||| Sbjct: 30248 ctgcctgctgcttgagctgt 30267
>emb|AL391825.15| Human DNA sequence from clone RP11-456P18 on chromosome 1 Contains the 3' end of the ATF6 gene for activating transcription factor 6, a proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)(PSME1) pseudogene, the 3' end of a novel gene (DKFZP586L151) and a CpG island, complete sequence Length = 211662 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 tttctctggaaatcagcctccatc 356 ||||||||| |||||||||||||| Sbjct: 30708 tttctctggcaatcagcctccatc 30731
>gb|AC141587.2| Homo sapiens chromosome 16 clone RP11-1046E19, complete sequence Length = 186890 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ggaaatcagcctccatctgc 359 |||||||||||||||||||| Sbjct: 140699 ggaaatcagcctccatctgc 140680
>gb|AC140254.4| Mus musculus BAC clone RP23-467N7 from chromosome 10, complete sequence Length = 196465 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 ctatctctctctccgcctct 392 |||||||||||||||||||| Sbjct: 154881 ctatctctctctccgcctct 154900
>gb|AC147018.4| Mus musculus BAC clone RP23-284H11 from chromosome 10, complete sequence Length = 182735 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 ctatctctctctccgcctct 392 |||||||||||||||||||| Sbjct: 160541 ctatctctctctccgcctct 160522
>gb|AC008802.7| Homo sapiens chromosome 5 clone CTD-2073O6, complete sequence Length = 92418 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 aaagaacaaggaattacagc 81 |||||||||||||||||||| Sbjct: 17845 aaagaacaaggaattacagc 17864
>emb|BX901917.9| Zebrafish DNA sequence from clone DKEY-32E10 in linkage group 5, complete sequence Length = 238589 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 ggccgactcatcaaccttta 181 |||||||||||||||||||| Sbjct: 232848 ggccgactcatcaaccttta 232829
>gb|AC008691.7| Homo sapiens chromosome 5 clone CTB-63A22, complete sequence Length = 153267 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gtagtatagacatggctgct 32 |||||||||||||||||||| Sbjct: 21362 gtagtatagacatggctgct 21343
>gb|AC106727.5| Homo sapiens 3q BAC RP11-534K3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 153692 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tactcagctatctctctctc 385 |||||||||||||||||||| Sbjct: 20091 tactcagctatctctctctc 20110
>gb|AC023538.7| Homo sapiens chromosome 8, clone RP11-510I21, complete sequence Length = 189543 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 tactcagctatctctctctc 385 |||||||||||||||||||| Sbjct: 133607 tactcagctatctctctctc 133588
>gb|AC007028.3| Homo sapiens chromosome 16 clone RP5-835P2, complete sequence Length = 148807 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 ggaaatcagcctccatctgc 359 |||||||||||||||||||| Sbjct: 68400 ggaaatcagcctccatctgc 68419
>gb|AC160052.2| Mus musculus BAC clone RP24-173L14 from chromosome 9, complete sequence Length = 154436 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 214 tctgaatcacctctggggagatgt 237 ||||| |||||||||||||||||| Sbjct: 122994 tctgagtcacctctggggagatgt 122971
>gb|AC141272.3| Homo sapiens chromosome 16 clone RP11-1415K9, complete sequence Length = 185187 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ggaaatcagcctccatctgc 359 |||||||||||||||||||| Sbjct: 54797 ggaaatcagcctccatctgc 54778
>gb|AC141248.2| Homo sapiens chromosome 16 clone RP11-1251B5, complete sequence Length = 173206 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ggaaatcagcctccatctgc 359 |||||||||||||||||||| Sbjct: 80410 ggaaatcagcctccatctgc 80391
>gb|AC092915.7| Homo sapiens 3 BAC RP11-585F20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187215 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gcctcttcttttgctttcct 406 |||||||||||||||||||| Sbjct: 156282 gcctcttcttttgctttcct 156263
>gb|AC136428.3| Homo sapiens chromosome 16 clone RP11-104C4, complete sequence Length = 193708 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ggaaatcagcctccatctgc 359 |||||||||||||||||||| Sbjct: 151102 ggaaatcagcctccatctgc 151083
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 341 gaaatcagcctccatctgcgcacg 364 |||||||||||| ||||||||||| Sbjct: 20723 gaaatcagcctcgatctgcgcacg 20700
>emb|AJ438591.1|MCR438591 Mesembryanthemum crystallinum mRNA for vacuolar ATPase subunit G (vha-G gene) Length = 587 Score = 40.1 bits (20), Expect = 8.0 Identities = 131/168 (77%) Strand = Plus / Minus Query: 258 tgttcaatttttacgtttgtctcttgctcaaggcgtttgacatttgcaccagagtcaccg 317 ||||||||||| | || || ||||| |||||||| || ||||| ||||| ||||| ||| Sbjct: 297 tgttcaattttagcattggtttcttgttcaaggcgcttcacattagcacctgagtctccg 238 Query: 318 ctggtctcggtgagctttctctggaaatcagcctccatctgcgcacggtactcagctatc 377 | |||| | ||| ||||||| ||| || ||||| || |||||| | ||||| ||| Sbjct: 237 gtactctctgcaagccttctctgatgatcggcttccatttgggcacggaattcagcaatc 178 Query: 378 tctctctccgcctcttcttttgctttcctaagccttgccgttttagca 425 || | || |||||||||||||||| ||| || || ||||| |||||| Sbjct: 177 tccttttcagcctcttcttttgcttgccttagtctggccgtcttagca 130
>ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) on chromosome 14 Length = 1279711 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ggaaatcagcctccatctgc 359 |||||||||||||||||||| Sbjct: 423273 ggaaatcagcctccatctgc 423254 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ggaaatcagcctccatctgc 359 |||||||||||||||||||| Sbjct: 241010 ggaaatcagcctccatctgc 240991
>gb|AC005337.1|AC005337 Homo sapiens chromosome 19, cosmid R25269, complete sequence Length = 43581 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 tcttttgctttcctaagcct 412 |||||||||||||||||||| Sbjct: 14505 tcttttgctttcctaagcct 14524
>gb|CP000165.1| Drosophila melanogaster genomic scaffold 211000022278591 Length = 119078 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 cttttgctttcctaagcctt 413 |||||||||||||||||||| Sbjct: 6321 cttttgctttcctaagcctt 6302
>gb|AC135018.3| Mus musculus BAC clone RP23-124G8 from 6, complete sequence Length = 192911 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 cctggcagcatttacaattt 447 |||||||||||||||||||| Sbjct: 189590 cctggcagcatttacaattt 189609
>emb|AL355432.7|HS56F10 Homo sapiens chromosome 9 BAC RP11-56F10, complete sequence Length = 188491 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcccaaagaaataaacagat 133 |||||||||||||||||||| Sbjct: 52373 tcccaaagaaataaacagat 52392
>emb|AL355433.6|HS179D22 Homo sapiens chromosome 9 BAC RP11-179D22, complete sequence Length = 177219 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcccaaagaaataaacagat 133 |||||||||||||||||||| Sbjct: 138157 tcccaaagaaataaacagat 138176
>gb|M99679.1|HUMIGH353X Human immunoglobulin heavy chain variable region V3-53 (IGHV@) gene, exons 1-2 Length = 724 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ggaaatcagcctccatctgc 359 |||||||||||||||||||| Sbjct: 627 ggaaatcagcctccatctgc 608
>dbj|AB019439.1| Homo sapiens DNA for immunoglobulin heavy-chain variable region, complete sequence, 3 of 5 Length = 200000 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ggaaatcagcctccatctgc 359 |||||||||||||||||||| Sbjct: 23273 ggaaatcagcctccatctgc 23254
>dbj|AB019438.1| Homo sapiens DNA for immunoglobulin heavy-chain variable region, complete sequence, 2 of 5 Length = 200000 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ggaaatcagcctccatctgc 359 |||||||||||||||||||| Sbjct: 41010 ggaaatcagcctccatctgc 40991 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,292,466 Number of Sequences: 3902068 Number of extensions: 6292466 Number of successful extensions: 118879 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 118609 Number of HSP's gapped (non-prelim): 260 length of query: 586 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 563 effective length of database: 17,143,297,704 effective search space: 9651676607352 effective search space used: 9651676607352 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)