>COG6_MOUSE (Q8R3I3) Conserved oligomeric Golgi complex component 6|
          Length = 605

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 1/187 (0%)
 Frame = -3

Query: 690 SISVDAILXXXXXXXXXXXXXXXKVYLINCLSAIEEPLMDQEVATSYVKNLRSMIETHTR 511
           S ++D +L                 +++N L  ++  L   E     ++ L+  IE H  
Sbjct: 423 SCALDPLLQMCTVSASNLGTADMATFMVNSLYMMKTTLALFEFTDRRLEMLQFQIEAHLD 482

Query: 510 ALVDKEADSILSKCGLSSKMPYIKNYSSTDGKDDARPLADVVETSAQMLLECLKAFYGLV 331
            L++++A  +L++ GLS    YI N +    + D   LA++    A  L   +  F   +
Sbjct: 483 TLINEQASYVLTRVGLS----YIYN-TIQQHRPDQGSLANMPNLDAVALKAAMAQFDRYL 537

Query: 330 TGTEGSL-PEFEQLQVPRLRSDACYGLARALAEAYELIYKAVMDPKNCYPDPRSLVKHSP 154
           +  +  L P+   L    ++          +  AY  ++ AVM+P N Y DP +++  SP
Sbjct: 538 SAPDHLLMPQLNSLLSATVKEQIIKQSTELICRAYAEVHAAVMNPDNAYKDPENILHRSP 597

Query: 153 EQIRTIL 133
           EQ++T+L
Sbjct: 598 EQVKTLL 604

>COG6_HUMAN (Q9Y2V7) Conserved oligomeric Golgi complex component 6|
          Length = 605

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 1/187 (0%)
 Frame = -3

Query: 690 SISVDAILXXXXXXXXXXXXXXXKVYLINCLSAIEEPLMDQEVATSYVKNLRSMIETHTR 511
           S  +D +L                 +++N L  ++  L   E     ++ L+  IE H  
Sbjct: 423 SCVLDPLLQMCTVSASNLGTADMATFMVNSLYMMKTTLALFEFTDRRLEMLQFQIEAHLD 482

Query: 510 ALVDKEADSILSKCGLSSKMPYIKNYSSTDGKDDARPLADVVETSAQMLLECLKAFYGLV 331
            L++++A  +L++ GLS     ++ +    G     P  D V   A M+      F   +
Sbjct: 483 TLINEQASYVLTRVGLSYIYNTVQQHKPEQGSLANMPNLDSVTLKAAMV-----QFDRYL 537

Query: 330 TGTEGSL-PEFEQLQVPRLRSDACYGLARALAEAYELIYKAVMDPKNCYPDPRSLVKHSP 154
           +  +  L P+   L    ++          +  AY  +Y AVM+P N Y DP +++  SP
Sbjct: 538 SAPDNLLIPQLNFLLSATVKEQIVKQSTELVCRAYGEVYAAVMNPINEYKDPENILHRSP 597

Query: 153 EQIRTIL 133
           +Q++T+L
Sbjct: 598 QQVQTLL 604

>COG6_DROME (Q9V564) Putative conserved oligomeric Golgi complex component 6|
          Length = 630

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 40/187 (21%), Positives = 74/187 (39%), Gaps = 1/187 (0%)
 Frame = -3

Query: 690 SISVDAILXXXXXXXXXXXXXXXKVYLINCLSAIEEPLMDQEVATSYVKNLRSMIETHTR 511
           S  +D +L                VYL+NCL  ++  L   E     V+ L++  +    
Sbjct: 455 SCVIDPLLQSVQESAAHLPTVDMGVYLLNCLHHMQSSLAVYEYMDERVERLQAQSDAQLD 514

Query: 510 ALVDKEADSILSKCGLSSKMPYIKNYSSTDGKDDARPLADVVETSA-QMLLECLKAFYGL 334
            L  ++A S+++   L      +++  S             +ET+  ++ +  + AF  L
Sbjct: 515 TLTSEQASSLVANLNLGPIYAILQSNQSK------------IETNLLKIFMSKMDAFLEL 562

Query: 333 VTGTEGSLPEFEQLQVPRLRSDACYGLARALAEAYELIYKAVMDPKNCYPDPRSLVKHSP 154
                  LP+ + +     R+         +   Y+ IY+ V DP N +  P  L+  +P
Sbjct: 563 PDVL--LLPQVQLIMSSSHRAAVQKRSFNVIVAIYKQIYERVHDPANGFEQPEQLLHRTP 620

Query: 153 EQIRTIL 133
           EQ+  IL
Sbjct: 621 EQVAHIL 627

>COTA_BACSU (P07788) Spore coat protein A|
          Length = 513

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 15/66 (22%)
 Frame = +1

Query: 55  IHHSDSEHESPLVTCIKRY--------------AVWTSDFEY-GSYLLRRMLDQRSWVRI 189
           IHHSDS+HE P V  +                 A ++ DFE  G Y  R +    +  R 
Sbjct: 88  IHHSDSQHEEPEVKTVVHLHGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRG 147

Query: 190 TVLWIH 207
            +LW H
Sbjct: 148 AILWYH 153

>COG6_CAEEL (Q21270) Putative conserved oligomeric Golgi complex component 6|
          Length = 642

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -3

Query: 618 VYLINCLSAIEEPLMDQEVATSYVKNLRSMIETHTRALVDKEADSILSKCGL 463
           V+ INCL+ I   + +       ++ + +MIE ++  LV  +   +L K G+
Sbjct: 466 VFTINCLTVIRSAISEISAFKKKIEMIDAMIEGNSDVLVSVQVSEMLEKSGI 517

>YN51_YEAST (P42843) Hypothetical 88.9 kDa protein in RFA2-STB1 intergenic|
           region
          Length = 763

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 12/51 (23%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +2

Query: 56  YITVIQNMNLLSLHVSKGML---CGPQISSMVLICSGECLTNDLGSG*QFF 199
           Y  ++++++LL ++    +L   C P +S++ + C+ +C TN+   G  ++
Sbjct: 403 YFKMVKHLSLLKINSKFDLLLCSCFPSLSNLTIDCNSKCFTNEQVVGESYY 453

>EDEM1_MOUSE (Q925U4) ER degradation-enhancing alpha-mannosidase-like 1|
          Length = 652

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 357 CLKAFYGLVTGTEGSLPEFE--QLQVPRLRSDACYGLARALAEAYELIYKAVMDP 199
           CL AFY  +    G+LPE    QLQ P +     Y L   L E+  L+Y+A  +P
Sbjct: 452 CLHAFYYAIWKRYGALPERYNWQLQAPDV---LFYPLRPELVESTYLLYQATKNP 503

>EDEM1_HUMAN (Q92611) ER degradation-enhancing alpha-mannosidase-like 1|
          Length = 657

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 357 CLKAFYGLVTGTEGSLPEFE--QLQVPRLRSDACYGLARALAEAYELIYKAVMDP 199
           CL AFY  +    G+LPE    QLQ P +     Y L   L E+  L+Y+A  +P
Sbjct: 457 CLHAFYYAIWKRYGALPERYNWQLQAPDV---LFYPLRPELVESTYLLYQATKNP 508


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,155,665
Number of Sequences: 219361
Number of extensions: 2048708
Number of successful extensions: 5591
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5588
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7026286028
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)