ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33j08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 343 5e-91
2gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome... 343 5e-91
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 343 5e-91
4ref|NM_187606.1| Oryza sativa (japonica cultivar-group), predic... 293 4e-76
5dbj|AK058500.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 5e-60
6gb|AY106552.1| Zea mays PCO118077 mRNA sequence 238 2e-59
7gb|AC115871.8| Mus musculus chromosome 5, clone RP24-343A12, com... 42 2.4
8gb|AC130483.6| Mus musculus chromosome 15, clone RP24-137D10, co... 42 2.4
9gb|AC132852.12| Mus musculus chromosome 9, clone RP24-298N7, com... 42 2.4
10gb|AC119168.10| Mus musculus chromosome 15, clone RP24-341L14, c... 42 2.4
11gb|AC125254.9| Mus musculus chromosome 9, clone RP24-156I15, com... 42 2.4
12gb|AC113970.8| Mus musculus chromosome 1, clone RP23-125E16, com... 42 2.4
13gb|AC101775.10| Mus musculus chromosome 19, clone RP24-116B5, co... 42 2.4
14gb|AC142098.2| Mus musculus BAC clone RP24-458F14 from chromosom... 42 2.4
15gb|AC141437.4| Mus musculus BAC clone RP23-283O7 from chromosome... 42 2.4
16gb|AC132260.3| Mus musculus BAC clone RP24-370C1 from chromosome... 42 2.4
17gb|AC127271.3| Mus musculus BAC clone RP23-453G12 from chromosom... 42 2.4
18gb|AC083948.3| Mus musculus strain C57BL6/J chromosome 5 clone R... 42 2.4
19gb|AC069562.51| Mus musculus strain C57BL/6J clone rp23-317e13 m... 42 2.4
20gb|AC012526.35| Mus musculus strain 129S6/SvEvTac clone rp21-671... 42 2.4
21gb|AC012399.40| Mus musculus strain 129S6/SvEvTac clone rp21-184... 42 2.4
22gb|AC100729.21| Mus musculus chromosome 19, clone RP24-286E16, c... 42 2.4
23gb|AC003060.1| Mus musculus Chromosome 16 BAC Clone 72k21 Synten... 42 2.4
24gb|AC084822.36| Mus musculus strain C57BL/6J clone rp23-47o21 ma... 42 2.4
25gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ... 42 2.4
26emb|AL928568.17| Mouse DNA sequence from clone RP23-396N8 on chr... 42 2.4
27emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on ch... 42 2.4
28gb|AC124516.4| Mus musculus BAC clone RP23-387C9 from 12, comple... 42 2.4
29gb|AC131682.4| Mus musculus BAC clone RP23-355L3 from chromosome... 42 2.4
30gb|AC170262.2| Mus musculus BAC clone RP23-163J7 from chromosome... 42 2.4
31emb|AL831725.5| Mouse DNA sequence from clone RP23-106P7 on chro... 42 2.4
32gb|AF109364.1| Homo sapiens MSTP010 mRNA, complete cds 40 9.6
33ref|XM_522818.1| PREDICTED: Pan troglodytes similar to sorting n... 40 9.6
34gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 9.6
35gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold 40 9.6
36gb|AY850394.1| Lycopersicon esculentum cultivar Heinz1706 chromo... 40 9.6
37ref|XM_611835.2| PREDICTED: Bos taurus similar to sorting nexin ... 40 9.6
38ref|XM_587595.2| PREDICTED: Bos taurus similar to sorting nexin ... 40 9.6
39gb|AC146447.3| Pan troglodytes BAC clone RP43-4N6 from 7, comple... 40 9.6
40ref|XM_544843.2| PREDICTED: Canis familiaris similar to Glutamat... 40 9.6
41gb|AC006358.6| Homo sapiens PAC clone RP5-1127D14 from 7, comple... 40 9.6
42emb|BX088589.14| Zebrafish DNA sequence from clone DKEY-27E7 in ... 40 9.6
43ref|XM_547770.2| PREDICTED: Canis familiaris similar to sorting ... 40 9.6
44gb|BC112784.1| Bos taurus similar to sorting nexin 6, mRNA (cDNA... 40 9.6
45gb|BC001798.1| Homo sapiens sorting nexin 6, mRNA (cDNA clone MG... 40 9.6
46emb|CR735103.4| Zebrafish DNA sequence from clone CH211-13L14 in... 40 9.6
47gb|BT008051.1| Synthetic construct Homo sapiens sorting nexin 6 ... 40 9.6
48emb|CR860687.1| Pongo pygmaeus mRNA; cDNA DKFZp459M2127 (from cl... 40 9.6
49gb|AC146675.3| Callithrix jacchus clone CH259-444F21, complete s... 40 9.6
50emb|CR625969.1| full-length cDNA clone CS0DI081YL09 of Placenta ... 40 9.6
51emb|CR623714.1| full-length cDNA clone CS0DG005YH17 of B cells (... 40 9.6
52emb|CR604623.1| full-length cDNA clone CS0DA006YB12 of Neuroblas... 40 9.6
53emb|CR593172.1| full-length cDNA clone CS0DF013YL23 of Fetal bra... 40 9.6
54emb|CR590030.1| full-length cDNA clone CS0DI014YA08 of Placenta ... 40 9.6
55dbj|AK021456.1| Homo sapiens cDNA FLJ11394 fis, clone HEMBA10005... 40 9.6
56ref|NM_152233.2| Homo sapiens sorting nexin 6 (SNX6), transcript... 40 9.6
57ref|NM_021249.3| Homo sapiens sorting nexin 6 (SNX6), transcript... 40 9.6
58gb|U83194.1|U83194 Homo sapiens TRAF4-associated factor 2 mRNA, ... 40 9.6
59dbj|AB169756.1| Macaca fascicularis brain cDNA, clone: QnpA-2050... 40 9.6
60gb|AF121856.1|AF121856 Homo sapiens sorting nexin 6 (SNX6) mRNA,... 40 9.6
61dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
62gb|AF335429.2| Ranunculus white mottle virus segment RNA1 putati... 40 9.6
63gb|AY891906.1| Synthetic construct Homo sapiens clone FLH014990.... 40 9.6
64gb|AY891905.1| Synthetic construct Homo sapiens clone FLH014989.... 40 9.6
65dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
66emb|AL445363.7|CNS07ECY Human chromosome 14 DNA sequence BAC R-6... 40 9.6
67gb|AY609965.1| Sus scrofa clone Clu_4888.scr.msk.p1.Contig2, mRN... 40 9.6
68emb|AL731701.8| Mouse DNA sequence from clone RP23-140L6 on chro... 40 9.6 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  343 bits (173), Expect = 5e-91
 Identities = 434/521 (83%)
 Strand = Plus / Minus

                                                                           
Query: 120     gacctcagatttcgagtatggttcttatctgctccggcgaatgcttgaccaacgatcttg 179
               ||||||||||||| ||||| || ||||||||||| ||||| || || || || || ||||
Sbjct: 6555871 gacctcagatttctagtatagtccttatctgctcaggcgagtgttttactaaagaccttg 6555812

                                                                           
Query: 180     ggtcaggataacagttctttggatccatcaccgccttgtagatgagctcgtaagcttctg 239
               ||||||| || || ||||||||||||| ||| ||||| ||||| || || |||||||| |
Sbjct: 6555811 ggtcagggtagcaattctttggatccaccactgccttatagatcagttcataagcttccg 6555752

                                                                           
Query: 240     ctagagctctcgccaaaccgtagcaagcgtctgatcgtaaccttggaacctggagctgct 299
               | |||||||| |||||||| ||||| || || || || |||||||| ||||| |||||||
Sbjct: 6555751 ccagagctctagccaaaccatagcatgcatcagaacgcaaccttggtacctgcagctgct 6555692

                                                                           
Query: 300     cgaattctggcaaggagccttctgtcccagtcacaagaccatagaatgccttcaaacact 359
               | ||||| |||||||| |||||||| |||||||| |||||||||||||||||||| || |
Sbjct: 6555691 caaattcaggcaaggaaccttctgttccagtcactagaccatagaatgccttcaagcatt 6555632

                                                                           
Query: 360     ccagaagcatttgtgccgatgtctccacgacatctgccagaggtcttgcatcatccttgc 419
               |||  | |||||| |  ||||||||||| | ||| |||| ||||| ||| ||||||||||
Sbjct: 6555631 ccaacaacatttgcggtgatgtctccacaatatcagccaaaggtcgtgcgtcatccttgc 6555572

                                                                           
Query: 420     catcagtagagctgtagttctttatgtatggcatcttacttgacaatccacatttactga 479
                  |||||||||| |||| ||||||||||||||||||  |||| | ||||||||| || |
Sbjct: 6555571 tgccagtagagctatagtcctttatgtatggcatcttgtttgatagtccacatttcctaa 6555512

                                                                           
Query: 480     gaatgctgtcagcttctttatctactaaggcacgtgtgtgcgtttcgatcatagagcgaa 539
               ||||||| ||||||||||||||||||| ||   |    || ||||| |||||||| || |
Sbjct: 6555511 gaatgctatcagcttctttatctactagggtgtgcaaatgtgtttcaatcatagaccgca 6555452

                                                                           
Query: 540     ggtttttaacatagcttgtagcaacctcctgatccatcaatggttcctcaatagctgata 599
               |||| |||| ||| ||||||||||| || ||  ||||||||||||||| ||||||||| |
Sbjct: 6555451 ggttgttaatataacttgtagcaacatcttggcccatcaatggttcctgaatagctgaca 6555392

                                                        
Query: 600     agcagttgatgaggtaaaccttggacgaagattcaccactc 640
               | |||||||||||||| |  ||||| |||||||||||||||
Sbjct: 6555391 aacagttgatgaggtagattttggatgaagattcaccactc 6555351



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                 
Query: 647     gatgtagatgatttctttgatagaatagcatcaactgagattgaatctct 696
               ||||| ||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct: 6554719 gatgttgatgaattcttagataaaatagcatcaactgagattgaatctct 6554670
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>gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0081P02, complete sequence
          Length = 162425

 Score =  343 bits (173), Expect = 5e-91
 Identities = 434/521 (83%)
 Strand = Plus / Minus

                                                                         
Query: 120   gacctcagatttcgagtatggttcttatctgctccggcgaatgcttgaccaacgatcttg 179
             ||||||||||||| ||||| || ||||||||||| ||||| || || || || || ||||
Sbjct: 98633 gacctcagatttctagtatagtccttatctgctcaggcgagtgttttactaaagaccttg 98574

                                                                         
Query: 180   ggtcaggataacagttctttggatccatcaccgccttgtagatgagctcgtaagcttctg 239
             ||||||| || || ||||||||||||| ||| ||||| ||||| || || |||||||| |
Sbjct: 98573 ggtcagggtagcaattctttggatccaccactgccttatagatcagttcataagcttccg 98514

                                                                         
Query: 240   ctagagctctcgccaaaccgtagcaagcgtctgatcgtaaccttggaacctggagctgct 299
             | |||||||| |||||||| ||||| || || || || |||||||| ||||| |||||||
Sbjct: 98513 ccagagctctagccaaaccatagcatgcatcagaacgcaaccttggtacctgcagctgct 98454

                                                                         
Query: 300   cgaattctggcaaggagccttctgtcccagtcacaagaccatagaatgccttcaaacact 359
             | ||||| |||||||| |||||||| |||||||| |||||||||||||||||||| || |
Sbjct: 98453 caaattcaggcaaggaaccttctgttccagtcactagaccatagaatgccttcaagcatt 98394

                                                                         
Query: 360   ccagaagcatttgtgccgatgtctccacgacatctgccagaggtcttgcatcatccttgc 419
             |||  | |||||| |  ||||||||||| | ||| |||| ||||| ||| ||||||||||
Sbjct: 98393 ccaacaacatttgcggtgatgtctccacaatatcagccaaaggtcgtgcgtcatccttgc 98334

                                                                         
Query: 420   catcagtagagctgtagttctttatgtatggcatcttacttgacaatccacatttactga 479
                |||||||||| |||| ||||||||||||||||||  |||| | ||||||||| || |
Sbjct: 98333 tgccagtagagctatagtcctttatgtatggcatcttgtttgatagtccacatttcctaa 98274

                                                                         
Query: 480   gaatgctgtcagcttctttatctactaaggcacgtgtgtgcgtttcgatcatagagcgaa 539
             ||||||| ||||||||||||||||||| ||   |    || ||||| |||||||| || |
Sbjct: 98273 gaatgctatcagcttctttatctactagggtgtgcaaatgtgtttcaatcatagaccgca 98214

                                                                         
Query: 540   ggtttttaacatagcttgtagcaacctcctgatccatcaatggttcctcaatagctgata 599
             |||| |||| ||| ||||||||||| || ||  ||||||||||||||| ||||||||| |
Sbjct: 98213 ggttgttaatataacttgtagcaacatcttggcccatcaatggttcctgaatagctgaca 98154

                                                      
Query: 600   agcagttgatgaggtaaaccttggacgaagattcaccactc 640
             | |||||||||||||| |  ||||| |||||||||||||||
Sbjct: 98153 aacagttgatgaggtagattttggatgaagattcaccactc 98113



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                               
Query: 647   gatgtagatgatttctttgatagaatagcatcaactgagattgaatctct 696
             ||||| ||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct: 97481 gatgttgatgaattcttagataaaatagcatcaactgagattgaatctct 97432
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  343 bits (173), Expect = 5e-91
 Identities = 434/521 (83%)
 Strand = Plus / Minus

                                                                           
Query: 120     gacctcagatttcgagtatggttcttatctgctccggcgaatgcttgaccaacgatcttg 179
               ||||||||||||| ||||| || ||||||||||| ||||| || || || || || ||||
Sbjct: 6555084 gacctcagatttctagtatagtccttatctgctcaggcgagtgttttactaaagaccttg 6555025

                                                                           
Query: 180     ggtcaggataacagttctttggatccatcaccgccttgtagatgagctcgtaagcttctg 239
               ||||||| || || ||||||||||||| ||| ||||| ||||| || || |||||||| |
Sbjct: 6555024 ggtcagggtagcaattctttggatccaccactgccttatagatcagttcataagcttccg 6554965

                                                                           
Query: 240     ctagagctctcgccaaaccgtagcaagcgtctgatcgtaaccttggaacctggagctgct 299
               | |||||||| |||||||| ||||| || || || || |||||||| ||||| |||||||
Sbjct: 6554964 ccagagctctagccaaaccatagcatgcatcagaacgcaaccttggtacctgcagctgct 6554905

                                                                           
Query: 300     cgaattctggcaaggagccttctgtcccagtcacaagaccatagaatgccttcaaacact 359
               | ||||| |||||||| |||||||| |||||||| |||||||||||||||||||| || |
Sbjct: 6554904 caaattcaggcaaggaaccttctgttccagtcactagaccatagaatgccttcaagcatt 6554845

                                                                           
Query: 360     ccagaagcatttgtgccgatgtctccacgacatctgccagaggtcttgcatcatccttgc 419
               |||  | |||||| |  ||||||||||| | ||| |||| ||||| ||| ||||||||||
Sbjct: 6554844 ccaacaacatttgcggtgatgtctccacaatatcagccaaaggtcgtgcgtcatccttgc 6554785

                                                                           
Query: 420     catcagtagagctgtagttctttatgtatggcatcttacttgacaatccacatttactga 479
                  |||||||||| |||| ||||||||||||||||||  |||| | ||||||||| || |
Sbjct: 6554784 tgccagtagagctatagtcctttatgtatggcatcttgtttgatagtccacatttcctaa 6554725

                                                                           
Query: 480     gaatgctgtcagcttctttatctactaaggcacgtgtgtgcgtttcgatcatagagcgaa 539
               ||||||| ||||||||||||||||||| ||   |    || ||||| |||||||| || |
Sbjct: 6554724 gaatgctatcagcttctttatctactagggtgtgcaaatgtgtttcaatcatagaccgca 6554665

                                                                           
Query: 540     ggtttttaacatagcttgtagcaacctcctgatccatcaatggttcctcaatagctgata 599
               |||| |||| ||| ||||||||||| || ||  ||||||||||||||| ||||||||| |
Sbjct: 6554664 ggttgttaatataacttgtagcaacatcttggcccatcaatggttcctgaatagctgaca 6554605

                                                        
Query: 600     agcagttgatgaggtaaaccttggacgaagattcaccactc 640
               | |||||||||||||| |  ||||| |||||||||||||||
Sbjct: 6554604 aacagttgatgaggtagattttggatgaagattcaccactc 6554564



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                 
Query: 647     gatgtagatgatttctttgatagaatagcatcaactgagattgaatctct 696
               ||||| ||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct: 6553932 gatgttgatgaattcttagataaaatagcatcaactgagattgaatctct 6553883
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>ref|NM_187606.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2178

 Score =  293 bits (148), Expect = 4e-76
 Identities = 340/404 (84%)
 Strand = Plus / Minus

                                                                        
Query: 293  agctgctcgaattctggcaaggagccttctgtcccagtcacaagaccatagaatgccttc 352
            |||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct: 1937 agctgctcaaattcaggcaaggaaccttctgttccagtcactagaccatagaatgccttc 1878

                                                                        
Query: 353  aaacactccagaagcatttgtgccgatgtctccacgacatctgccagaggtcttgcatca 412
            || || ||||  | |||||| |  ||||||||||| | ||| |||| ||||| ||| |||
Sbjct: 1877 aagcattccaacaacatttgcggtgatgtctccacaatatcagccaaaggtcgtgcgtca 1818

                                                                        
Query: 413  tccttgccatcagtagagctgtagttctttatgtatggcatcttacttgacaatccacat 472
            |||||||   |||||||||| |||| ||||||||||||||||||  |||| | |||||||
Sbjct: 1817 tccttgctgccagtagagctatagtcctttatgtatggcatcttgtttgatagtccacat 1758

                                                                        
Query: 473  ttactgagaatgctgtcagcttctttatctactaaggcacgtgtgtgcgtttcgatcata 532
            || || |||||||| ||||||||||||||||||| ||   |    || ||||| ||||||
Sbjct: 1757 ttcctaagaatgctatcagcttctttatctactagggtgtgcaaatgtgtttcaatcata 1698

                                                                        
Query: 533  gagcgaaggtttttaacatagcttgtagcaacctcctgatccatcaatggttcctcaata 592
            || || ||||| |||| ||| ||||||||||| || ||  ||||||||||||||| ||||
Sbjct: 1697 gaccgcaggttgttaatataacttgtagcaacatcttggcccatcaatggttcctgaata 1638

                                                                        
Query: 593  gctgataagcagttgatgaggtaaaccttggacgaagattcaccactcaggaccgatgta 652
            ||||| || |||||||||||||| |  ||||| ||||||||||||||||| |  ||||| 
Sbjct: 1637 gctgacaaacagttgatgaggtagattttggatgaagattcaccactcagaaaggatgtt 1578

                                                        
Query: 653  gatgatttctttgatagaatagcatcaactgagattgaatctct 696
            ||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct: 1577 gatgaattcttagataaaatagcatcaactgagattgaatctct 1534
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>dbj|AK058500.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-F03, full
           insert sequence
          Length = 475

 Score =  240 bits (121), Expect = 5e-60
 Identities = 283/337 (83%)
 Strand = Plus / Minus

                                                                       
Query: 120 gacctcagatttcgagtatggttcttatctgctccggcgaatgcttgaccaacgatcttg 179
           ||||||||||||| ||||| || ||||||||||| ||||| || || || || || ||||
Sbjct: 351 gacctcagatttctagtatagtccttatctgctcaggcgagtgttttactaaagaccttg 292

                                                                       
Query: 180 ggtcaggataacagttctttggatccatcaccgccttgtagatgagctcgtaagcttctg 239
           ||||||| || || ||||||||||||| ||| ||||| ||||| || || |||||||| |
Sbjct: 291 ggtcagggtagcaattctttggatccaccactgccttatagatcagttcataagcttccg 232

                                                                       
Query: 240 ctagagctctcgccaaaccgtagcaagcgtctgatcgtaaccttggaacctggagctgct 299
           | |||||||| |||||||| ||||| || || || || |||||||| ||||| |||||||
Sbjct: 231 ccagagctctagccaaaccatagcatgcatcagaacgcaaccttggtacctgcagctgct 172

                                                                       
Query: 300 cgaattctggcaaggagccttctgtcccagtcacaagaccatagaatgccttcaaacact 359
           | ||||| |||||||| |||||||| |||||||| |||||||||||||||||||| || |
Sbjct: 171 caaattcaggcaaggaaccttctgttccagtcactagaccatagaatgccttcaagcatt 112

                                                                       
Query: 360 ccagaagcatttgtgccgatgtctccacgacatctgccagaggtcttgcatcatccttgc 419
           |||  | |||||| |  ||||||||||| | ||| |||| ||||| ||| ||||||||||
Sbjct: 111 ccaacaacatttgcggtgatgtctccacaatatcagccaaaggtcgtgcgtcatccttgc 52

                                                
Query: 420 catcagtagagctgtagttctttatgtatggcatctt 456
              |||||||||| |||| ||||||||||||||||||
Sbjct: 51  tgccagtagagctatagtcctttatgtatggcatctt 15
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>gb|AY106552.1| Zea mays PCO118077 mRNA sequence
          Length = 1231

 Score =  238 bits (120), Expect = 2e-59
 Identities = 255/300 (85%)
 Strand = Plus / Minus

                                                                       
Query: 120 gacctcagatttcgagtatggttcttatctgctccggcgaatgcttgaccaacgatcttg 179
           ||||||||  ||| ||||| ||||||||||| || || || ||||| ||||| || ||||
Sbjct: 968 gacctcaggcttccagtatagttcttatctgttcaggagagtgcttaaccaaagaccttg 909

                                                                       
Query: 180 ggtcaggataacagttctttggatccatcaccgccttgtagatgagctcgtaagcttctg 239
           |||||||||||| ||| || |||||||| || ||  |||| |||||||| |||| |||||
Sbjct: 908 ggtcaggataactgttattcggatccatgactgcgctgtaaatgagctcataagattctg 849

                                                                       
Query: 240 ctagagctctcgccaaaccgtagcaagcgtctgatcgtaaccttggaacctggagctgct 299
           |||||||||| |||||||| | ||| || ||||| ||||||||||||||||| || ||||
Sbjct: 848 ctagagctcttgccaaaccattgcaggcatctgaacgtaaccttggaacctgcagttgct 789

                                                                       
Query: 300 cgaattctggcaaggagccttctgtcccagtcacaagaccatagaatgccttcaaacact 359
           | ||||| |||||||| |||||||| |||||||||| |||||||||||||||||| || |
Sbjct: 788 caaattcaggcaaggaaccttctgttccagtcacaataccatagaatgccttcaagcatt 729

                                                                       
Query: 360 ccagaagcatttgtgccgatgtctccacgacatctgccagaggtcttgcatcatccttgc 419
           ||| ||||||||||| ||| ||||| |  | |||||||||||| ||||||||| ||||||
Sbjct: 728 ccataagcatttgtggcgacgtctcgataatatctgccagaggccttgcatcagccttgc 669



 Score =  172 bits (87), Expect = 1e-39
 Identities = 213/255 (83%)
 Strand = Plus / Minus

                                                                       
Query: 439 ctttatgtatggcatcttacttgacaatccacatttactgagaatgctgtcagcttcttt 498
           ||||||||| ||||||||| |||| | ||||||||| || ||||||| |||| |||||||
Sbjct: 658 ctttatgtacggcatcttatttgatagtccacatttcctaagaatgcagtcaacttcttt 599

                                                                       
Query: 499 atctactaaggcacgtgtgtgcgtttcgatcatagagcgaaggtttttaacatagcttgt 558
           ||| || | | |||   | || | ||| ||||||||||| ||||| || |||||||||||
Sbjct: 598 atcgacaaggacacaaatatgtgcttcaatcatagagcgcaggttgtttacatagcttgt 539

                                                                       
Query: 559 agcaacctcctgatccatcaatggttcctcaatagctgataagcagttgatgaggtaaac 618
           ||| ||||||||  |||||||||| |||| ||||||||| ||||||||||||||||| ||
Sbjct: 538 agcgacctcctggcccatcaatggctcctgaatagctgacaagcagttgatgaggtagac 479

                                                                       
Query: 619 cttggacgaagattcaccactcaggaccgatgtagatgatttctttgatagaatagcatc 678
            ||||| ||||||||  ||||||| | ||| |||||| | ||||| || |||||||||||
Sbjct: 478 tttggatgaagattcggcactcagaatcgacgtagataaattcttagacagaatagcatc 419

                          
Query: 679 aactgagattgaatc 693
           |||||| || |||||
Sbjct: 418 aactgatatagaatc 404
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>gb|AC115871.8| Mus musculus chromosome 5, clone RP24-343A12, complete sequence
          Length = 175928

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 346   tgccttcaaacactccagaag 366
             |||||||||||||||||||||
Sbjct: 58784 tgccttcaaacactccagaag 58804
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>gb|AC130483.6| Mus musculus chromosome 15, clone RP24-137D10, complete sequence
          Length = 137626

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 346   tgccttcaaacactccagaag 366
             |||||||||||||||||||||
Sbjct: 97844 tgccttcaaacactccagaag 97824
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>gb|AC132852.12| Mus musculus chromosome 9, clone RP24-298N7, complete sequence
          Length = 183786

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 346    tgccttcaaacactccagaag 366
              |||||||||||||||||||||
Sbjct: 166410 tgccttcaaacactccagaag 166430
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>gb|AC119168.10| Mus musculus chromosome 15, clone RP24-341L14, complete sequence
          Length = 134714

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 346  tgccttcaaacactccagaag 366
            |||||||||||||||||||||
Sbjct: 5733 tgccttcaaacactccagaag 5713
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>gb|AC125254.9| Mus musculus chromosome 9, clone RP24-156I15, complete sequence
          Length = 161503

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 346    tgccttcaaacactccagaag 366
              |||||||||||||||||||||
Sbjct: 159952 tgccttcaaacactccagaag 159932
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>gb|AC113970.8| Mus musculus chromosome 1, clone RP23-125E16, complete sequence
          Length = 235703

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 346   tgccttcaaacactccagaag 366
             |||||||||||||||||||||
Sbjct: 57515 tgccttcaaacactccagaag 57535
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>gb|AC101775.10| Mus musculus chromosome 19, clone RP24-116B5, complete sequence
          Length = 167945

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 346    tgccttcaaacactccagaag 366
              |||||||||||||||||||||
Sbjct: 153605 tgccttcaaacactccagaag 153625
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>gb|AC142098.2| Mus musculus BAC clone RP24-458F14 from chromosome 19, complete sequence
          Length = 193811

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 346    tgccttcaaacactccagaag 366
              |||||||||||||||||||||
Sbjct: 139497 tgccttcaaacactccagaag 139477
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>gb|AC141437.4| Mus musculus BAC clone RP23-283O7 from chromosome 19, complete sequence
          Length = 134644

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 346   tgccttcaaacactccagaag 366
             |||||||||||||||||||||
Sbjct: 41757 tgccttcaaacactccagaag 41737
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>gb|AC132260.3| Mus musculus BAC clone RP24-370C1 from chromosome 13, complete sequence
          Length = 160903

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 346    tgccttcaaacactccagaag 366
              |||||||||||||||||||||
Sbjct: 127228 tgccttcaaacactccagaag 127248
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>gb|AC127271.3| Mus musculus BAC clone RP23-453G12 from chromosome 19, complete sequence
          Length = 191346

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 346    tgccttcaaacactccagaag 366
              |||||||||||||||||||||
Sbjct: 157127 tgccttcaaacactccagaag 157147
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>gb|AC083948.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-67P7, complete
             sequence
          Length = 214125

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 346   tgccttcaaacactccagaag 366
             |||||||||||||||||||||
Sbjct: 52409 tgccttcaaacactccagaag 52389
to top
>gb|AC069562.51| Mus musculus strain C57BL/6J clone rp23-317e13 map 13, complete
           sequence
          Length = 215278

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 346 tgccttcaaacactccagaag 366
           |||||||||||||||||||||
Sbjct: 279 tgccttcaaacactccagaag 299
to top
>gb|AC012526.35| Mus musculus strain 129S6/SvEvTac clone rp21-671i11 map 16, complete
              sequence
          Length = 186272

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 346    tgccttcaaacactccagaag 366
              |||||||||||||||||||||
Sbjct: 153676 tgccttcaaacactccagaag 153656
to top
>gb|AC012399.40| Mus musculus strain 129S6/SvEvTac clone rp21-184c17 map 16, complete
              sequence
          Length = 146040

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 346    tgccttcaaacactccagaag 366
              |||||||||||||||||||||
Sbjct: 107660 tgccttcaaacactccagaag 107680
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>gb|AC100729.21| Mus musculus chromosome 19, clone RP24-286E16, complete sequence
          Length = 167242

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 346  tgccttcaaacactccagaag 366
            |||||||||||||||||||||
Sbjct: 3274 tgccttcaaacactccagaag 3294
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>gb|AC003060.1| Mus musculus Chromosome 16 BAC Clone 72k21 Syntenic To Homo sapiens
              22q11.2 DGCR Region, complete sequence
          Length = 118235

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 346    tgccttcaaacactccagaag 366
              |||||||||||||||||||||
Sbjct: 111393 tgccttcaaacactccagaag 111373
to top
>gb|AC084822.36| Mus musculus strain C57BL/6J clone rp23-47o21 map 16, complete sequence
          Length = 195335

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 346    tgccttcaaacactccagaag 366
              |||||||||||||||||||||
Sbjct: 144567 tgccttcaaacactccagaag 144547
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>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 346    tgccttcaaacactccagaag 366
              |||||||||||||||||||||
Sbjct: 146910 tgccttcaaacactccagaag 146930
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>emb|AL928568.17| Mouse DNA sequence from clone RP23-396N8 on chromosome 2, complete
             sequence
          Length = 98566

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 346   tgccttcaaacactccagaag 366
             |||||||||||||||||||||
Sbjct: 28972 tgccttcaaacactccagaag 28952
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>emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on chromosome 17, complete
             sequence
          Length = 231197

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 346   tgccttcaaacactccagaag 366
             |||||||||||||||||||||
Sbjct: 67862 tgccttcaaacactccagaag 67882
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>gb|AC124516.4| Mus musculus BAC clone RP23-387C9 from 12, complete sequence
          Length = 236774

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 346    tgccttcaaacactccagaag 366
              |||||||||||||||||||||
Sbjct: 122958 tgccttcaaacactccagaag 122978
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>gb|AC131682.4| Mus musculus BAC clone RP23-355L3 from chromosome unknown, complete
              sequence
          Length = 196773

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 16     agaagaaactgcaacctcagt 36
              |||||||||||||||||||||
Sbjct: 193253 agaagaaactgcaacctcagt 193233
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>gb|AC170262.2| Mus musculus BAC clone RP23-163J7 from chromosome 17, complete sequence
          Length = 219714

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 417   tgccatcagtagagctgtagt 437
             |||||||||||||||||||||
Sbjct: 83286 tgccatcagtagagctgtagt 83266
to top
>emb|AL831725.5| Mouse DNA sequence from clone RP23-106P7 on chromosome X, complete
              sequence
          Length = 174712

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 16     agaagaaactgcaacctcagt 36
              |||||||||||||||||||||
Sbjct: 167308 agaagaaactgcaacctcagt 167328
to top
>gb|AF109364.1| Homo sapiens MSTP010 mRNA, complete cds
          Length = 1405

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 140 gatgtagatgatttctttga 159
to top
>ref|XM_522818.1| PREDICTED: Pan troglodytes similar to sorting nexin 6 (LOC467421),
           mRNA
          Length = 1602

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 649 gatgtagatgatttctttga 668
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 297     gctcgaattctggcaaggagcctt 320
               |||||||||||||||||| |||||
Sbjct: 1558763 gctcgaattctggcaaggcgcctt 1558740
to top
>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold
          Length = 1952403

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     ttacatgtatcaaaaggtat 111
              ||||||||||||||||||||
Sbjct: 418578 ttacatgtatcaaaaggtat 418559
to top
>gb|AY850394.1| Lycopersicon esculentum cultivar Heinz1706 chromosome 12 centromeric
              region
          Length = 326112

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 618    ccttggacgaagattcacca 637
              ||||||||||||||||||||
Sbjct: 247514 ccttggacgaagattcacca 247495
to top
>ref|XM_611835.2| PREDICTED: Bos taurus similar to sorting nexin 6 (LOC532685), mRNA
          Length = 3141

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 886 gatgtagatgatttctttga 905
to top
>ref|XM_587595.2| PREDICTED: Bos taurus similar to sorting nexin 6 (LOC510454), mRNA
          Length = 642

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 613 gatgtagatgatttctttga 632
to top
>gb|AC146447.3| Pan troglodytes BAC clone RP43-4N6 from 7, complete sequence
          Length = 200529

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 425    gtagagctgtagttctttatgtat 448
              |||||| |||||||||||||||||
Sbjct: 191736 gtagagttgtagttctttatgtat 191713
to top
>ref|XM_544843.2| PREDICTED: Canis familiaris similar to Glutamate receptor, ionotropic
            kainate 1 precursor (Glutamate receptor 5) (GluR-5)
            (GluR5) (LOC487719), mRNA
          Length = 2772

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 19   agaaactgcaacctcagtcagatt 42
            |||||||||||||||| |||||||
Sbjct: 2209 agaaactgcaacctcactcagatt 2232
to top
>gb|AC006358.6| Homo sapiens PAC clone RP5-1127D14 from 7, complete sequence
          Length = 143216

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 425   gtagagctgtagttctttatgtat 448
             |||||| |||||||||||||||||
Sbjct: 15311 gtagagttgtagttctttatgtat 15334
to top
>emb|BX088589.14| Zebrafish DNA sequence from clone DKEY-27E7 in linkage group 12, complete
              sequence
          Length = 242558

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     gtaatatacatcacagtgat 69
              ||||||||||||||||||||
Sbjct: 232919 gtaatatacatcacagtgat 232938
to top
>ref|XM_547770.2| PREDICTED: Canis familiaris similar to sorting nexin 6 (LOC490648),
           mRNA
          Length = 2352

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 628 gatgtagatgatttctttga 647
to top
>gb|BC112784.1| Bos taurus similar to sorting nexin 6, mRNA (cDNA clone
           IMAGE:8163955), complete cds
          Length = 1821

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 640 gatgtagatgatttctttga 659
to top
>gb|BC001798.1| Homo sapiens sorting nexin 6, mRNA (cDNA clone MGC:3157
           IMAGE:3354467), complete cds
          Length = 3041

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 762 gatgtagatgatttctttga 781
to top
>emb|CR735103.4| Zebrafish DNA sequence from clone CH211-13L14 in linkage group 12,
             complete sequence
          Length = 126042

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    gtaatatacatcacagtgat 69
             ||||||||||||||||||||
Sbjct: 57849 gtaatatacatcacagtgat 57830
to top
>gb|BT008051.1| Synthetic construct Homo sapiens sorting nexin 6 mRNA, partial cds
          Length = 873

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 265 gatgtagatgatttctttga 284
to top
>emb|CR860687.1| Pongo pygmaeus mRNA; cDNA DKFZp459M2127 (from clone DKFZp459M2127)
          Length = 2962

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 639 gatgtagatgatttctttga 658
to top
>gb|AC146675.3| Callithrix jacchus clone CH259-444F21, complete sequence
          Length = 188829

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    ttacatgtatcaaaaggtat 111
             ||||||||||||||||||||
Sbjct: 88973 ttacatgtatcaaaaggtat 88954
to top
>emb|CR625969.1| full-length cDNA clone CS0DI081YL09 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1904

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 635 gatgtagatgatttctttga 654
to top
>emb|CR623714.1| full-length cDNA clone CS0DG005YH17 of B cells (Ramos cell line) of
           Homo sapiens (human)
          Length = 1319

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 6   gatgtagatgatttctttga 25
to top
>emb|CR604623.1| full-length cDNA clone CS0DA006YB12 of Neuroblastoma of Homo
           sapiens (human)
          Length = 1598

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 308 gatgtagatgatttctttga 327
to top
>emb|CR593172.1| full-length cDNA clone CS0DF013YL23 of Fetal brain of Homo sapiens
           (human)
          Length = 1841

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 632 gatgtagatgatttctttga 651
to top
>emb|CR590030.1| full-length cDNA clone CS0DI014YA08 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1910

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 608 gatgtagatgatttctttga 627
to top
>dbj|AK021456.1| Homo sapiens cDNA FLJ11394 fis, clone HEMBA1000592, highly similar
           to Homo sapiens sorting nexin 6 (SNX6) mRNA
          Length = 1470

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 144 gatgtagatgatttctttga 163
to top
>ref|NM_152233.2| Homo sapiens sorting nexin 6 (SNX6), transcript variant 2, mRNA
          Length = 2975

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 657 gatgtagatgatttctttga 676
to top
>ref|NM_021249.3| Homo sapiens sorting nexin 6 (SNX6), transcript variant 1, mRNA
          Length = 3080

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 762 gatgtagatgatttctttga 781
to top
>gb|U83194.1|U83194 Homo sapiens TRAF4-associated factor 2 mRNA, partial cds
          Length = 1906

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 625 gatgtagatgatttctttga 644
to top
>dbj|AB169756.1| Macaca fascicularis brain cDNA, clone: QnpA-20504, similar to human
           sorting nexin 6 (SNX6), transcript variant 1, mRNA,
           RefSeq: NM_021249.2
          Length = 1953

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 678 gatgtagatgatttctttga 697
to top
>gb|AF121856.1|AF121856 Homo sapiens sorting nexin 6 (SNX6) mRNA, complete cds
          Length = 1969

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 648 gatgtagatgatttctttga 667
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 59       atcacagtgattcagaacat 78
                ||||||||||||||||||||
Sbjct: 23036404 atcacagtgattcagaacat 23036423
to top
>gb|AF335429.2| Ranunculus white mottle virus segment RNA1 putative RNA polymerase
            gene, partial cds
          Length = 4018

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 673  agcatcaactgagattgaat 692
            ||||||||||||||||||||
Sbjct: 2753 agcatcaactgagattgaat 2772
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>gb|AY891906.1| Synthetic construct Homo sapiens clone FLH014990.01L sorting nexin
           6 (SNX6) mRNA, partial cds
          Length = 873

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 265 gatgtagatgatttctttga 284
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>gb|AY891905.1| Synthetic construct Homo sapiens clone FLH014989.01L sorting nexin
           6 (SNX6) mRNA, partial cds
          Length = 873

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 265 gatgtagatgatttctttga 284
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>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0470B03
          Length = 163371

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    atcacagtgattcagaacat 78
             ||||||||||||||||||||
Sbjct: 96132 atcacagtgattcagaacat 96151
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>emb|AL445363.7|CNS07ECY Human chromosome 14 DNA sequence BAC R-671J11 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 181987

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 647    gatgtagatgatttctttga 666
              ||||||||||||||||||||
Sbjct: 164996 gatgtagatgatttctttga 164977
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>gb|AY609965.1| Sus scrofa clone Clu_4888.scr.msk.p1.Contig2, mRNA sequence
          Length = 1611

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 647 gatgtagatgatttctttga 666
           ||||||||||||||||||||
Sbjct: 612 gatgtagatgatttctttga 631
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>emb|AL731701.8| Mouse DNA sequence from clone RP23-140L6 on chromosome X, complete
             sequence
          Length = 128198

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   ctgtagttctttatgtatgg 450
             ||||||||||||||||||||
Sbjct: 69648 ctgtagttctttatgtatgg 69667


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,239,380
Number of Sequences: 3902068
Number of extensions: 6239380
Number of successful extensions: 121235
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120916
Number of HSP's gapped (non-prelim): 319
length of query: 701
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 678
effective length of database: 17,143,297,704
effective search space: 11623155843312
effective search space used: 11623155843312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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