ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33j01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103701.1| Oryza sativa (japonica cultivar-group) cDNA clon... 321 2e-84
2gb|AY110062.1| Zea mays CL19880_1 mRNA sequence 218 2e-53
3ref|NM_188371.1| Oryza sativa (japonica cultivar-group), predic... 188 2e-44
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 188 2e-44
5dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic D... 188 2e-44
6gb|AC021242.10| Homo sapiens chromosome 8, clone RP11-375N15, co... 42 2.3
7gb|AC105286.5| Homo sapiens BAC clone RP11-107L21 from 2, comple... 42 2.3
8gb|AY393092.1| Homo sapiens clone RA702-G5-25.fa immunoglobulin ... 40 9.2
9gb|BT012806.1| Lycopersicon esculentum clone 113825R, mRNA sequence 40 9.2
10gb|AC118051.7| Mus musculus chromosome 1, clone RP24-430E15, com... 40 9.2
11ref|XM_384216.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 9.2
12ref|XM_803030.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 9.2
13emb|Z81087.1|CEF53E4 Caenorhabditis elegans Cosmid F53E4, comple... 40 9.2
14ref|XM_815891.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 9.2
15gb|AC123555.4| Mus musculus BAC clone RP23-139L20 from 1, comple... 40 9.2
16gb|AC139728.3| Carollia perspicillata clone 29G20, complete sequ... 40 9.2
17gb|AC092897.6| Homo sapiens 3 BAC RP11-292P2 (Roswell Park Cance... 40 9.2
18gb|AE005837.1| Caulobacter crescentus CB15 section 163 of 359 of... 40 9.2
19gb|AC079329.15| Homo sapiens chromosome 11, clone RP11-265D17, c... 40 9.2
20gb|AC025106.8| Homo sapiens chromosome 11, clone RP11-734D5, com... 40 9.2
21gb|AC021120.6| Homo sapiens BAC clone RP11-347O8 from 4, complet... 40 9.2
22dbj|AK081518.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 9.2
23gb|AF224669.1|AF213884S2 Homo sapiens mannosidase, beta A, lysos... 40 9.2
24emb|BX510913.9| Zebrafish DNA sequence from clone CH211-202D4 in... 40 9.2
25gb|AC130831.4| Mus musculus BAC clone RP24-80P9 from 14, complet... 40 9.2
26gb|AC148007.3| Mus musculus BAC clone RP23-273G4 from 1, complet... 40 9.2
27emb|AL772231.8| Mouse DNA sequence from clone RP23-398O7 on chro... 40 9.2
28gb|AC158992.2| Mus musculus BAC clone RP24-396L14 from chromosom... 40 9.2
29gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold 40 9.2
30emb|AL845518.6| Mouse DNA sequence from clone RP23-300M9 on chro... 40 9.2 
>dbj|AK103701.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136L19, full
            insert sequence
          Length = 2231

 Score =  321 bits (162), Expect = 2e-84
 Identities = 327/382 (85%)
 Strand = Plus / Minus

                                                                        
Query: 287  cttggtcggtaggcagcctcctcagcaacttatacagcccgaaaacgttcttgtgctccc 346
            ||||||| |||||||||||||||||||  || ||||| || ||||| || || |||| ||
Sbjct: 1898 cttggtcagtaggcagcctcctcagcagtttgtacaggccaaaaacattgttttgctgcc 1839

                                                                        
Query: 347  attggtatggtatgaagaacgaccggtatagtgccggtgaaagctctctgtctagaaatg 406
            || |||  ||||||||||| |||||||||| ||| |||||||||||||| || ||||| |
Sbjct: 1838 atcggtgcggtatgaagaatgaccggtataatgcaggtgaaagctctctatccagaaagg 1779

                                                                        
Query: 407  gtagcgatgccaatgtctcccatgttgacaggtcgtttccacgagaggggtaaggccgcc 466
            | ||||  |||| |||||||||||| ||||  ||  |||| || || ||||||||||| |
Sbjct: 1778 gcagcgcagccagtgtctcccatgtcgacaaatcacttcctcgggatgggtaaggccgtc 1719

                                                                        
Query: 467  tcagatcaagctccatcagtaagttgcatgctccaatgtctttcaaatattgcttgtcgg 526
            | |||||||| |||| ||||||| | ||||| ||||||||||||| |||||| |  || |
Sbjct: 1718 taagatcaagttccaccagtaagctacatgccccaatgtctttcagatattgttcatcag 1659

                                                                        
Query: 527  aggccttgttcttggtattgaaataagatggagcagcagtggtgcctcccagtgtttcat 586
            ||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1658 aggccttgttcttgtcattgaaataagatggagcagcagtggtgcctcccagggtttcat 1599

                                                                        
Query: 587  tgaagggaaatgggagaaggcctcggaaaccgtcatctatccagcgaacttcactgatat 646
            ||||||||||||| ||||| |||||||| || ||||||||||| | ||||||||| ||||
Sbjct: 1598 tgaagggaaatggaagaagccctcggaagccatcatctatccaccaaacttcactaatat 1539

                                  
Query: 647  aggagggtacgaagaatgatga 668
            ||||||||| |||||| |||||
Sbjct: 1538 aggagggtatgaagaacgatga 1517
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>gb|AY110062.1| Zea mays CL19880_1 mRNA sequence
          Length = 733

 Score =  218 bits (110), Expect = 2e-53
 Identities = 302/366 (82%)
 Strand = Plus / Minus

                                                                       
Query: 303 cctcctcagcaacttatacagcccgaaaacgttcttgtgctcccattggtatggtatgaa 362
           ||||||||| | ||| ||||| ||||| || || || || | |||| |||||||||||||
Sbjct: 508 cctcctcagtagcttgtacaggccgaacacattgttttgttgccatcggtatggtatgaa 449

                                                                       
Query: 363 gaacgaccggtatagtgccggtgaaagctctctgtctagaaatggtagcgatgccaatgt 422
           ||| ||||| |||| ||| || |||||||||||||| || || || || |  ||||||| 
Sbjct: 448 gaaggaccgatataatgcaggggaaagctctctgtccaggaacggcagtgcggccaatgc 389

                                                                       
Query: 423 ctcccatgttgacaggtcgtttccacgagaggggtaaggccgcctcagatcaagctccat 482
           ||||||||| |||| |||  | || || |||||||||||||| || |||||||| |||| 
Sbjct: 388 ctcccatgtcgacaagtcactcccgcgcgaggggtaaggccgtcttagatcaagttccac 329

                                                                       
Query: 483 cagtaagttgcatgctccaatgtctttcaaatattgcttgtcggaggccttgttcttggt 542
           ||||||||| ||||||||||||||||||| |||||||   || |  |||||||||||| |
Sbjct: 328 cagtaagttacatgctccaatgtctttcagatattgcccttcagccgccttgttcttgtt 269

                                                                       
Query: 543 attgaaataagatggagcagcagtggtgcctcccagtgtttcattgaagggaaatgggag 602
           |||||| || || ||||| |||||||| || |||||||| || |||||||||||||| ||
Sbjct: 268 attgaagtaggacggagctgcagtggtcccacccagtgtctcgttgaagggaaatggaag 209

                                                                       
Query: 603 aaggcctcggaaaccgtcatctatccagcgaacttcactgatataggagggtacgaagaa 662
            |  || ||||| || ||||||||||| || |||||||||||||| ||||||| ||||||
Sbjct: 208 taacccacggaagccatcatctatccaccggacttcactgatataagagggtatgaagaa 149

                 
Query: 663 tgatga 668
            |||||
Sbjct: 148 cgatga 143
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>ref|NM_188371.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1791

 Score =  188 bits (95), Expect = 2e-44
 Identities = 131/143 (91%)
 Strand = Plus / Minus

                                                                        
Query: 526  gaggccttgttcttggtattgaaataagatggagcagcagtggtgcctcccagtgtttca 585
            |||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1460 gaggccttgttcttgtcattgaaataagatggagcagcagtggtgcctcccagggtttca 1401

                                                                        
Query: 586  ttgaagggaaatgggagaaggcctcggaaaccgtcatctatccagcgaacttcactgata 645
            |||||||||||||| ||||| |||||||| || ||||||||||| | ||||||||| |||
Sbjct: 1400 ttgaagggaaatggaagaagccctcggaagccatcatctatccaccaaacttcactaata 1341

                                   
Query: 646  taggagggtacgaagaatgatga 668
            |||||||||| |||||| |||||
Sbjct: 1340 taggagggtatgaagaacgatga 1318



 Score =  145 bits (73), Expect = 2e-31
 Identities = 187/225 (83%)
 Strand = Plus / Minus

                                                                        
Query: 287  cttggtcggtaggcagcctcctcagcaacttatacagcccgaaaacgttcttgtgctccc 346
            ||||||| |||||||||||||||||||  || ||||| || ||||| || || |||| ||
Sbjct: 1786 cttggtcagtaggcagcctcctcagcagtttgtacaggccaaaaacattgttttgctgcc 1727

                                                                        
Query: 347  attggtatggtatgaagaacgaccggtatagtgccggtgaaagctctctgtctagaaatg 406
            || |||  ||||||||||| |||||||||| ||| |||||||||||||| || ||||| |
Sbjct: 1726 atcggtgcggtatgaagaatgaccggtataatgcaggtgaaagctctctatccagaaagg 1667

                                                                        
Query: 407  gtagcgatgccaatgtctcccatgttgacaggtcgtttccacgagaggggtaaggccgcc 466
            | ||||  |||| |||||||||||| ||||  ||  |||| || || ||||||||||| |
Sbjct: 1666 gcagcgcagccagtgtctcccatgtcgacaaatcacttcctcgggatgggtaaggccgtc 1607

                                                         
Query: 467  tcagatcaagctccatcagtaagttgcatgctccaatgtctttca 511
            | |||||||| |||| ||||||| | ||||| |||||||||||||
Sbjct: 1606 taagatcaagttccaccagtaagctacatgccccaatgtctttca 1562
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  188 bits (95), Expect = 2e-44
 Identities = 131/143 (91%)
 Strand = Plus / Minus

                                                                           
Query: 526     gaggccttgttcttggtattgaaataagatggagcagcagtggtgcctcccagtgtttca 585
               |||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5915033 gaggccttgttcttgtcattgaaataagatggagcagcagtggtgcctcccagggtttca 5914974

                                                                           
Query: 586     ttgaagggaaatgggagaaggcctcggaaaccgtcatctatccagcgaacttcactgata 645
               |||||||||||||| ||||| |||||||| || ||||||||||| | ||||||||| |||
Sbjct: 5914973 ttgaagggaaatggaagaagccctcggaagccatcatctatccaccaaacttcactaata 5914914

                                      
Query: 646     taggagggtacgaagaatgatga 668
               |||||||||| |||||| |||||
Sbjct: 5914913 taggagggtatgaagaacgatga 5914891



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 100/118 (84%)
 Strand = Plus / Minus

                                                                           
Query: 287     cttggtcggtaggcagcctcctcagcaacttatacagcccgaaaacgttcttgtgctccc 346
               ||||||| |||||||||||||||||||  || ||||| || ||||| || || |||| ||
Sbjct: 5915447 cttggtcagtaggcagcctcctcagcagtttgtacaggccaaaaacattgttttgctgcc 5915388

                                                                         
Query: 347     attggtatggtatgaagaacgaccggtatagtgccggtgaaagctctctgtctagaaa 404
               || |||  ||||||||||| |||||||||| ||| |||||||||||||| || |||||
Sbjct: 5915387 atcggtgcggtatgaagaatgaccggtataatgcaggtgaaagctctctatccagaaa 5915330



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                         
Query: 454     gggtaaggccgcctcagatcaagctccatcagtaagttgcatgctccaatgtctttca 511
               ||||||||||| || |||||||| |||| ||||||| | ||||| |||||||||||||
Sbjct: 5915192 gggtaaggccgtctaagatcaagttccaccagtaagctacatgccccaatgtctttca 5915135
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>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0016I09
          Length = 148517

 Score =  188 bits (95), Expect = 2e-44
 Identities = 131/143 (91%)
 Strand = Plus / Minus

                                                                          
Query: 526    gaggccttgttcttggtattgaaataagatggagcagcagtggtgcctcccagtgtttca 585
              |||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 118774 gaggccttgttcttgtcattgaaataagatggagcagcagtggtgcctcccagggtttca 118715

                                                                          
Query: 586    ttgaagggaaatgggagaaggcctcggaaaccgtcatctatccagcgaacttcactgata 645
              |||||||||||||| ||||| |||||||| || ||||||||||| | ||||||||| |||
Sbjct: 118714 ttgaagggaaatggaagaagccctcggaagccatcatctatccaccaaacttcactaata 118655

                                     
Query: 646    taggagggtacgaagaatgatga 668
              |||||||||| |||||| |||||
Sbjct: 118654 taggagggtatgaagaacgatga 118632



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 100/118 (84%)
 Strand = Plus / Minus

                                                                          
Query: 287    cttggtcggtaggcagcctcctcagcaacttatacagcccgaaaacgttcttgtgctccc 346
              ||||||| |||||||||||||||||||  || ||||| || ||||| || || |||| ||
Sbjct: 119188 cttggtcagtaggcagcctcctcagcagtttgtacaggccaaaaacattgttttgctgcc 119129

                                                                        
Query: 347    attggtatggtatgaagaacgaccggtatagtgccggtgaaagctctctgtctagaaa 404
              || |||  ||||||||||| |||||||||| ||| |||||||||||||| || |||||
Sbjct: 119128 atcggtgcggtatgaagaatgaccggtataatgcaggtgaaagctctctatccagaaa 119071



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                        
Query: 454    gggtaaggccgcctcagatcaagctccatcagtaagttgcatgctccaatgtctttca 511
              ||||||||||| || |||||||| |||| ||||||| | ||||| |||||||||||||
Sbjct: 118933 gggtaaggccgtctaagatcaagttccaccagtaagctacatgccccaatgtctttca 118876
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>gb|AC021242.10| Homo sapiens chromosome 8, clone RP11-375N15, complete sequence
          Length = 196152

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 53    tcaggagagctggaattagga 73
             |||||||||||||||||||||
Sbjct: 73318 tcaggagagctggaattagga 73298
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>gb|AC105286.5| Homo sapiens BAC clone RP11-107L21 from 2, complete sequence
          Length = 109231

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 173  gaatgaaaatctagggaacaaaatt 197
            |||||||||| ||||||||||||||
Sbjct: 9659 gaatgaaaatatagggaacaaaatt 9635
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>gb|AY393092.1| Homo sapiens clone RA702-G5-25.fa immunoglobulin heavy chain mRNA,
           partial cds
          Length = 513

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 603 aaggcctcggaaaccgtcatctat 626
           ||||||||||| ||||||||||||
Sbjct: 292 aaggcctcggacaccgtcatctat 315
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>gb|BT012806.1| Lycopersicon esculentum clone 113825R, mRNA sequence
          Length = 1044

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 320 acagcccgaaaacgttcttg 339
           ||||||||||||||||||||
Sbjct: 377 acagcccgaaaacgttcttg 358
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>gb|AC118051.7| Mus musculus chromosome 1, clone RP24-430E15, complete sequence
          Length = 180197

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     tcattaacagtctcacagca 48
              ||||||||||||||||||||
Sbjct: 137614 tcattaacagtctcacagca 137633
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>ref|XM_384216.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG04040.1)
            partial mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 520  ttgtcggaggccttgttcttggta 543
            ||||||| ||||||||||||||||
Sbjct: 2690 ttgtcggcggccttgttcttggta 2667
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>ref|XM_803030.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053509149.70) partial mRNA
          Length = 1014

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 177 gaaaatctagggaacaaaat 196
           ||||||||||||||||||||
Sbjct: 44  gaaaatctagggaacaaaat 63
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>emb|Z81087.1|CEF53E4 Caenorhabditis elegans Cosmid F53E4, complete sequence
          Length = 16082

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 585   attgaagggaaatgggagaa 604
             ||||||||||||||||||||
Sbjct: 14238 attgaagggaaatgggagaa 14219
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>ref|XM_815891.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508175.300) partial mRNA
          Length = 1017

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 177 gaaaatctagggaacaaaat 196
           ||||||||||||||||||||
Sbjct: 44  gaaaatctagggaacaaaat 63
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>gb|AC123555.4| Mus musculus BAC clone RP23-139L20 from 1, complete sequence
          Length = 205623

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   gtctcacagcatcagtcagg 57
            ||||||||||||||||||||
Sbjct: 4056 gtctcacagcatcagtcagg 4075
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>gb|AC139728.3| Carollia perspicillata clone 29G20, complete sequence
          Length = 125364

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 501   aatgtctttcaaatattgct 520
             ||||||||||||||||||||
Sbjct: 27799 aatgtctttcaaatattgct 27818
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>gb|AC092897.6| Homo sapiens 3 BAC RP11-292P2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 127044

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   agtctacaaagcctacacac 128
             ||||||||||||||||||||
Sbjct: 58282 agtctacaaagcctacacac 58301
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>gb|AE005837.1| Caulobacter crescentus CB15 section 163 of 359 of the complete genome
          Length = 10846

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 521  tgtcggaggccttgttcttg 540
            ||||||||||||||||||||
Sbjct: 9049 tgtcggaggccttgttcttg 9068
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>gb|AC079329.15| Homo sapiens chromosome 11, clone RP11-265D17, complete sequence
          Length = 156540

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 573   tcccagtgtttcattgaagg 592
             ||||||||||||||||||||
Sbjct: 13966 tcccagtgtttcattgaagg 13985
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>gb|AC025106.8| Homo sapiens chromosome 11, clone RP11-734D5, complete sequence
          Length = 190779

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 573  tcccagtgtttcattgaagg 592
            ||||||||||||||||||||
Sbjct: 6923 tcccagtgtttcattgaagg 6904
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>gb|AC021120.6| Homo sapiens BAC clone RP11-347O8 from 4, complete sequence
          Length = 193980

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    acagcatcagtcaggagagctgga 66
             |||||||||| |||||||||||||
Sbjct: 32810 acagcatcagacaggagagctgga 32833
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>dbj|AK081518.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130028L19 product:ral guanine nucleotide
            dissociation stimulator,-like 1, full insert sequence
          Length = 3201

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 29   tcattaacagtctcacagca 48
            ||||||||||||||||||||
Sbjct: 1595 tcattaacagtctcacagca 1614
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>gb|AF224669.1|AF213884S2 Homo sapiens mannosidase, beta A, lysosomal (MANBA) gene, and
            ubiquitin-conjugating enzyme E2D 3 (UBE2D3) genes,
            complete cds
          Length = 266941

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 43   acagcatcagtcaggagagctgga 66
            |||||||||| |||||||||||||
Sbjct: 2149 acagcatcagacaggagagctgga 2126
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>emb|BX510913.9| Zebrafish DNA sequence from clone CH211-202D4 in linkage group 22,
              complete sequence
          Length = 203952

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 541    gtattgaaataagatggagc 560
              ||||||||||||||||||||
Sbjct: 180236 gtattgaaataagatggagc 180217
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>gb|AC130831.4| Mus musculus BAC clone RP24-80P9 from 14, complete sequence
          Length = 233804

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 532    ttgttcttggtattgaaata 551
              ||||||||||||||||||||
Sbjct: 199880 ttgttcttggtattgaaata 199861
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>gb|AC148007.3| Mus musculus BAC clone RP23-273G4 from 1, complete sequence
          Length = 184937

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     gtctcacagcatcagtcagg 57
              ||||||||||||||||||||
Sbjct: 109243 gtctcacagcatcagtcagg 109224
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>emb|AL772231.8| Mouse DNA sequence from clone RP23-398O7 on chromosome 4, complete
              sequence
          Length = 153653

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 388    agctctctgtctagaaatgg 407
              ||||||||||||||||||||
Sbjct: 120287 agctctctgtctagaaatgg 120268
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>gb|AC158992.2| Mus musculus BAC clone RP24-396L14 from chromosome 9, complete sequence
          Length = 163838

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 468   cagatcaagctccatcagta 487
             ||||||||||||||||||||
Sbjct: 63602 cagatcaagctccatcagta 63621
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>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold
          Length = 1501503

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 501    aatgtctttcaaatattgct 520
              ||||||||||||||||||||
Sbjct: 581141 aatgtctttcaaatattgct 581160
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>emb|AL845518.6| Mouse DNA sequence from clone RP23-300M9 on chromosome 2, complete
             sequence
          Length = 118632

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    gcatcagtcaggagagctgg 65
             ||||||||||||||||||||
Sbjct: 72888 gcatcagtcaggagagctgg 72869


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,397,671
Number of Sequences: 3902068
Number of extensions: 5397671
Number of successful extensions: 97697
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97613
Number of HSP's gapped (non-prelim): 80
length of query: 671
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 648
effective length of database: 17,143,297,704
effective search space: 11108856912192
effective search space used: 11108856912192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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