ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags33i21 |
|---|---|
| Clone Library Name | barley_pub |
>CSN6A_ARATH (Q8W206) COP9 signalosome complex subunit 6a (Signalosome subunit| 6a) (AtCSN6a) Length = 317 Score = 104 bits (260), Expect = 1e-22 Identities = 51/67 (76%), Positives = 59/67 (88%) Frame = -3 Query: 508 SSLVRRLPAMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFNTTYERSPARR 329 SSL+RRLPAMESE+FQD+FL EYND LL+TYLAM TNCSS MNE+V+KFNT Y+R+ RR Sbjct: 252 SSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKFNTAYDRN-TRR 310 Query: 328 GGRGAFM 308 GGR AFM Sbjct: 311 GGRTAFM 317
>CSN6B_ARATH (Q8W1P0) COP9 signalosome complex subunit 6b (Signalosome subunit| 6b) (AtCSN6b) Length = 317 Score = 94.7 bits (234), Expect = 1e-19 Identities = 46/67 (68%), Positives = 56/67 (83%) Frame = -3 Query: 508 SSLVRRLPAMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFNTTYERSPARR 329 SSL+R LPA ESEKF ++FL EYND LLM+YLAM TNC+S MNE+V+KFNT Y++ +RR Sbjct: 252 SSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNMNEVVDKFNTAYDKH-SRR 310 Query: 328 GGRGAFM 308 GGR AFM Sbjct: 311 GGRTAFM 317
>CSN6_XENLA (Q6NUC2) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| Length = 318 Score = 57.0 bits (136), Expect = 3e-08 Identities = 28/66 (42%), Positives = 38/66 (57%) Frame = -3 Query: 508 SSLVRRLPAMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFNTTYERSPARR 329 S+L LP + ++KF+ DF + ND LM+YL T +TMN+ V KFN Y+R R Sbjct: 252 SALCHCLPVLSTDKFKTDFYDQCNDVGLMSYLGTITKTCNTMNQFVNKFNILYDRQGIGR 311 Query: 328 GGRGAF 311 RG F Sbjct: 312 RMRGLF 317
>CSN6_MOUSE (O88545) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| (SGN6) (JAB1-containing signalosome subunit 6) Length = 324 Score = 55.5 bits (132), Expect = 8e-08 Identities = 27/65 (41%), Positives = 36/65 (55%) Frame = -3 Query: 505 SLVRRLPAMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFNTTYERSPARRG 326 +L LP + ++KF+ DF + ND LM YL T +TMN+ V KFN Y+R R Sbjct: 259 ALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQGIGRR 318 Query: 325 GRGAF 311 RG F Sbjct: 319 MRGLF 323
>CSN6_HUMAN (Q7L5N1) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| (SGN6) (JAB1-containing signalosome subunit 6) (Vpr-interacting protein) (hVIP) (MOV34 homolog) Length = 327 Score = 55.5 bits (132), Expect = 8e-08 Identities = 27/65 (41%), Positives = 36/65 (55%) Frame = -3 Query: 505 SLVRRLPAMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFNTTYERSPARRG 326 +L LP + ++KF+ DF + ND LM YL T +TMN+ V KFN Y+R R Sbjct: 262 ALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQGIGRR 321 Query: 325 GRGAF 311 RG F Sbjct: 322 MRGLF 326
>CSN6_DROME (Q9VCY3) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| (Dch6) Length = 341 Score = 52.0 bits (123), Expect = 9e-07 Identities = 25/65 (38%), Positives = 37/65 (56%) Frame = -3 Query: 505 SLVRRLPAMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFNTTYERSPARRG 326 +L RLP M+ FQ++F T+ ND L++YL T + M+ V KFN Y+R + R Sbjct: 276 ALCHRLPVMQVPAFQEEFYTQCNDVGLISYLGTLTKGCNDMHHFVNKFNMLYDRQGSARR 335 Query: 325 GRGAF 311 RG + Sbjct: 336 MRGLY 340
>L_MEASE (P12576) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2183 Score = 32.0 bits (71), Expect = 1.0 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +3 Query: 117 INPGTSSH*SNPERIRRLK-SLRYCRT*LIARKKLRLDMGTIFKISARITSTKTSAAAGR 293 ++P SS NP + SL Y R I + +LR+D G IF A + ++ + Sbjct: 1650 LSPAGSSWNINPIIVDHYSCSLTYLRRGSIKQIRLRVDPGFIFDALAEVNVSQPKIGSNN 1709 Query: 294 LEPIYMKAPRPP 329 + + +KA RPP Sbjct: 1710 ISNMSIKAFRPP 1721
>L_MEASA (P35975) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2183 Score = 32.0 bits (71), Expect = 1.0 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +3 Query: 117 INPGTSSH*SNPERIRRLK-SLRYCRT*LIARKKLRLDMGTIFKISARITSTKTSAAAGR 293 ++P SS NP + SL Y R I + +LR+D G IF A + ++ + Sbjct: 1650 LSPAGSSWNINPIIVDHYSCSLTYLRRGSIKQIRLRVDPGFIFDALAEVNVSQPKIGSNN 1709 Query: 294 LEPIYMKAPRPP 329 + + +KA RPP Sbjct: 1710 ISNMSIKAFRPP 1721
>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5| (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f) Length = 361 Score = 32.0 bits (71), Expect = 1.0 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = -3 Query: 505 SLVRRLPAMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNE 377 SLV ++P + + F+ + ND L++TYLA T +NE Sbjct: 314 SLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNE 356
>IF35_HUMAN (O00303) Eukaryotic translation initiation factor 3 subunit 5| (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f) Length = 357 Score = 32.0 bits (71), Expect = 1.0 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = -3 Query: 505 SLVRRLPAMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNE 377 SLV ++P + + F+ + ND L++TYLA T +NE Sbjct: 310 SLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNE 352
>SOMA_ESOLU (P34744) Somatotropin precursor (Growth hormone)| Length = 209 Score = 30.8 bits (68), Expect = 2.2 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Frame = +2 Query: 65 HLLSRTLHVNFGTRGIINQPRHVESLIQPREDKKIEKSQILPDLTDCTQKIASRYGNYFQ 244 H +S L+ N + + N + LI+ ++ +P L D + YGNY+Q Sbjct: 113 HTMSNNLNQNQMSEKLSNLKVGINLLIKGNQED-------VPSLDDNDSQQLLPYGNYYQ 165 Query: 245 NL-STDNQHQNLSCSRTVGTDLHE 313 NL DN +N D+H+ Sbjct: 166 NLGDNDNVRRNYELLACFKKDMHK 189
>SIPA_SALTI (P74849) Cell invasion protein sipA (Effector protein sipA)| Length = 685 Score = 30.4 bits (67), Expect = 2.9 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 1/127 (0%) Frame = +2 Query: 65 HLLSRTLHVNFGTRGIINQPRHVESLIQPREDKKIEKSQILPDLTDCTQKIASRYGNYFQ 244 H + + H+N + N RH+++ K I+ S+ D + R+G Sbjct: 302 HSVDNSKHINNSRSHVDNSQRHIDNSNHDNSRKTIDNSRTFID-------NSQRHGE--S 352 Query: 245 NLSTDNQHQNLSCSRTVGTDLHESTSASSPGRGSLIRGVK-LLDQLVHCA*TVREHCKVS 421 + ST++ + + S SR V + H++ +A S G++ G+ +D H + Sbjct: 353 HHSTNSSNVSHSHSR-VDSTTHQTETAHSASTGTIDHGIAGKIDVTAHATAEAVTNSSSE 411 Query: 422 HEEGVVV 442 ++G VV Sbjct: 412 SKDGKVV 418
>SIPA_SALTY (Q56027) Cell invasion protein sipA (Effector protein sipA)| Length = 685 Score = 29.6 bits (65), Expect = 5.0 Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 1/127 (0%) Frame = +2 Query: 65 HLLSRTLHVNFGTRGIINQPRHVESLIQPREDKKIEKSQILPDLTDCTQKIASRYGNYFQ 244 H + + H+N + N RH+++ K I+ S+ D + N Sbjct: 302 HSVDNSKHINNSRSHVDNSQRHIDNSNHDNSRKTIDNSRTFID---------NSQRNGES 352 Query: 245 NLSTDNQHQNLSCSRTVGTDLHESTSASSPGRGSLIRGVK-LLDQLVHCA*TVREHCKVS 421 + ST++ + + S SR V + H++ +A S G++ G+ +D H + Sbjct: 353 HHSTNSSNVSHSHSR-VDSTTHQTETAHSASTGAIDHGIAGKIDVTAHATAEAVTNASSE 411 Query: 422 HEEGVVV 442 ++G VV Sbjct: 412 SKDGKVV 418
>SIPA_SALEN (Q8VQB5) Cell invasion protein sipA (Effector protein sipA)| Length = 685 Score = 29.6 bits (65), Expect = 5.0 Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 1/127 (0%) Frame = +2 Query: 65 HLLSRTLHVNFGTRGIINQPRHVESLIQPREDKKIEKSQILPDLTDCTQKIASRYGNYFQ 244 H + + H+N + N RH+++ K I+ S+ D + N Sbjct: 302 HSVDNSKHINNSRSHVDNSQRHIDNSNHDNSRKTIDNSRTFID---------NSQRNGES 352 Query: 245 NLSTDNQHQNLSCSRTVGTDLHESTSASSPGRGSLIRGVK-LLDQLVHCA*TVREHCKVS 421 + ST++ + + S SR V + H++ +A S G++ G+ +D H + Sbjct: 353 HHSTNSSNVSHSHSR-VDSTTHQTETAHSASTGAIDHGIAGKIDVTAHATAEAVTNASSE 411 Query: 422 HEEGVVV 442 ++G VV Sbjct: 412 SKDGKVV 418
>DENR_PONPY (Q5RFP5) Density-regulated protein (DRP)| Length = 198 Score = 29.6 bits (65), Expect = 5.0 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 3/77 (3%) Frame = +2 Query: 170 EKSQILPDLTDCTQKIASRYGNYFQNLSTDN---QHQNLSCSRTVGTDLHESTSASSPGR 340 E + +PD+ C Q + + N F L+ +N Q +S + + E GR Sbjct: 42 EYCEYMPDVAKCRQWLEKNFPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGR 101 Query: 341 GSLIRGVKLLDQLVHCA 391 G + + K + Q V A Sbjct: 102 GQIKQKKKTVPQKVTIA 118
>DENR_HUMAN (O43583) Density-regulated protein (DRP) (DRP1 protein) (Smooth| muscle cell-associated protein 3) (SMAP-3) Length = 198 Score = 29.6 bits (65), Expect = 5.0 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 3/77 (3%) Frame = +2 Query: 170 EKSQILPDLTDCTQKIASRYGNYFQNLSTDN---QHQNLSCSRTVGTDLHESTSASSPGR 340 E + +PD+ C Q + + N F L+ +N Q +S + + E GR Sbjct: 42 EYCEYMPDVAKCRQWLEKNFPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGR 101 Query: 341 GSLIRGVKLLDQLVHCA 391 G + + K + Q V A Sbjct: 102 GQIKQKKKTVPQKVTIA 118
>YS56_CAEEL (Q09378) Hypothetical protein ZK673.6| Length = 284 Score = 29.6 bits (65), Expect = 5.0 Identities = 14/21 (66%), Positives = 17/21 (80%), Gaps = 1/21 (4%) Frame = +2 Query: 152 REDKKIEKSQILPDLTD-CTQ 211 R KK+EK+QILPDL D CT+ Sbjct: 172 RRRKKVEKTQILPDLRDQCTK 192
>INT1_CANAL (P53705) Integrin alpha chain-like protein (Alpha-INT1)| Length = 1664 Score = 29.6 bits (65), Expect = 5.0 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%) Frame = +2 Query: 152 REDK----KIEKSQILPDLTDCTQKIASRYGNYFQNLSTDNQHQNLSCSRTVGTDLHEST 319 RED + EKS IL D++ + I +YGN ++T + L+ R+ D S Sbjct: 607 REDNDDISRFEKSDILNDVSQTSDIIGDKYGNSSSEITT----KTLAPPRSDNNDKENSK 662 Query: 320 SASSPGRGSLIR 355 S P ++ Sbjct: 663 SLEDPANNESLQ 674
>NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 precursor| (N-methyl D-aspartate receptor subtype 2C) (NR2C) (NMDAR2C) Length = 1237 Score = 29.3 bits (64), Expect = 6.5 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 8/65 (12%) Frame = -2 Query: 431 PPH-DLPCNVHELFKHNERVGREV*HHV*EIPCQERRPRCFHVDRFQ-------PSCCS* 276 P H LP +V E F + + H PC + RP C H+ + Q P C Sbjct: 1079 PRHASLPSSVAEAFTRSNPLPARCTGHACACPCPQSRPSCRHLAQAQSLRLPSYPEACVE 1138 Query: 275 GFGAG 261 G AG Sbjct: 1139 GVPAG 1143
>SEC2_YEAST (P17065) Rab guanine nucleotide exchange factor SEC2 (GDP-GTP| exchange factor SEC2) Length = 759 Score = 28.9 bits (63), Expect = 8.5 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +2 Query: 146 QPREDKKIEKSQILPDLTDCTQKIAS-RYGNYFQNLSTDNQHQNLSCSRTVGTDLHESTS 322 Q RE+ I++++ ++ Q I+S R + +N DN + L + T+G E Sbjct: 675 QFREESAIDQTEFENAESNVKQNISSKRASSGDENSKKDNNEKTLKTNLTIGDKTQEQIG 734 Query: 323 ASSPGRG 343 +SP G Sbjct: 735 ENSPSSG 741
>TAIP2_HUMAN (Q8WYN3) TGF-beta-induced apoptosis protein 2 (TAIP-2)| Length = 585 Score = 28.9 bits (63), Expect = 8.5 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +3 Query: 78 ELYMSTSGQEG*SINPGTSSH*SNPERIRRLKSLR 182 E+ S S G S+NP TSSH + ++R K LR Sbjct: 27 EVSSSESADSGDSVNPSTSSHFTPSSILKREKRLR 61
>SYC_GEOSL (Q747A2) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 481 Score = 28.9 bits (63), Expect = 8.5 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +2 Query: 386 CA*TVREHCKVSHEEGVVVFR*EIILEFLRFHSWQSSY 499 C TV +HC + H VVF ++I +LR ++ +Y Sbjct: 29 CGVTVYDHCHIGHARANVVF--DMIYRYLRHAGYEVTY 64
>BCL9_DROME (Q961D9) Bcl-9 homolog (Protein legless)| Length = 1469 Score = 28.9 bits (63), Expect = 8.5 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = +2 Query: 206 TQKIASRYGNYFQNLSTDNQHQNLSCSRTVGTDLHESTSASSPGRGS-----LIRGVKLL 370 T + N+ ++ST ++ Q + G DL + T S PG + ++GVK+ Sbjct: 459 TSRSGQNSRNHVDSISTSSESQAIKILEAAGVDLGQVTKGSDPGLTTENNIVSLQGVKVP 518 Query: 371 DQ 376 D+ Sbjct: 519 DE 520 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,416,819 Number of Sequences: 219361 Number of extensions: 1431603 Number of successful extensions: 3582 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3503 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3581 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
