| Clone Name | rbags33i21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483183.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1408 Score = 236 bits (119), Expect = 6e-59 Identities = 185/207 (89%) Strand = Plus / Minus Query: 303 atctacatgaaagcacctcggcctcctctcctggcaggggatctctcatacgtggtgtta 362 ||||||||||||||||||||||||||||||||||||| || ||||| || || | |||| Sbjct: 1085 atctacatgaaagcacctcggcctcctctcctggcagtcgacctctcgtatgtcgcgtta 1026 Query: 363 aacttctcgaccaactcgttcattgtgcttgaacagttcgtgaacattgcaaggtaagtc 422 ||||||||||||| ||| |||||||||||||||||||| |||||||| |||||||||||| Sbjct: 1025 aacttctcgaccagctcattcattgtgcttgaacagttagtgaacatagcaaggtaagtc 966 Query: 423 atgaggagggtgtcgttgtattccgttaagaaatcatcttggaatttctccgattccata 482 |||||||||||||| ||||||||| ||| ||| |||||||||||||| || || ||||| Sbjct: 965 atgaggagggtgtcattgtattccattaggaagtcatcttggaatttttctgactccatt 906 Query: 483 gctggcagtcttcttacgaggcttgag 509 ||||| || |||||||| ||||||||| Sbjct: 905 gctggtagccttcttactaggcttgag 879
>dbj|AK058215.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-D12, full insert sequence Length = 1408 Score = 236 bits (119), Expect = 6e-59 Identities = 185/207 (89%) Strand = Plus / Minus Query: 303 atctacatgaaagcacctcggcctcctctcctggcaggggatctctcatacgtggtgtta 362 ||||||||||||||||||||||||||||||||||||| || ||||| || || | |||| Sbjct: 1085 atctacatgaaagcacctcggcctcctctcctggcagtcgacctctcgtatgtcgcgtta 1026 Query: 363 aacttctcgaccaactcgttcattgtgcttgaacagttcgtgaacattgcaaggtaagtc 422 ||||||||||||| ||| |||||||||||||||||||| |||||||| |||||||||||| Sbjct: 1025 aacttctcgaccagctcattcattgtgcttgaacagttagtgaacatagcaaggtaagtc 966 Query: 423 atgaggagggtgtcgttgtattccgttaagaaatcatcttggaatttctccgattccata 482 |||||||||||||| ||||||||| ||| ||| |||||||||||||| || || ||||| Sbjct: 965 atgaggagggtgtcattgtattccattaggaagtcatcttggaatttttctgactccatt 906 Query: 483 gctggcagtcttcttacgaggcttgag 509 ||||| || |||||||| ||||||||| Sbjct: 905 gctggtagccttcttactaggcttgag 879
>emb|AM234671.1| Oryza sativa mRNA for COP9 signalosome subunit 6 (csn6 gene) Length = 1408 Score = 236 bits (119), Expect = 6e-59 Identities = 185/207 (89%) Strand = Plus / Minus Query: 303 atctacatgaaagcacctcggcctcctctcctggcaggggatctctcatacgtggtgtta 362 ||||||||||||||||||||||||||||||||||||| || ||||| || || | |||| Sbjct: 1085 atctacatgaaagcacctcggcctcctctcctggcagtcgacctctcgtatgtcgcgtta 1026 Query: 363 aacttctcgaccaactcgttcattgtgcttgaacagttcgtgaacattgcaaggtaagtc 422 ||||||||||||| ||| |||||||||||||||||||| |||||||| |||||||||||| Sbjct: 1025 aacttctcgaccagctcattcattgtgcttgaacagttagtgaacatagcaaggtaagtc 966 Query: 423 atgaggagggtgtcgttgtattccgttaagaaatcatcttggaatttctccgattccata 482 |||||||||||||| ||||||||| ||| ||| |||||||||||||| || || ||||| Sbjct: 965 atgaggagggtgtcattgtattccattaggaagtcatcttggaatttttctgactccatt 906 Query: 483 gctggcagtcttcttacgaggcttgag 509 ||||| || |||||||| ||||||||| Sbjct: 905 gctggtagccttcttactaggcttgag 879
>gb|BT017731.1| Zea mays clone EL01N0448B12.c mRNA sequence Length = 1383 Score = 216 bits (109), Expect = 5e-53 Identities = 181/205 (88%) Strand = Plus / Minus Query: 305 ctacatgaaagcacctcggcctcctctcctggcaggggatctctcatacgtggtgttaaa 364 |||||||||||||||||| |||||||||||| || | ||||||||| | ||||| | Sbjct: 1070 ctacatgaaagcacctcgacctcctctcctgctagtcgttctctcatagctcgtgtttat 1011 Query: 365 cttctcgaccaactcgttcattgtgcttgaacagttcgtgaacattgcaaggtaagtcat 424 ||||||||||||||||||||||||||||||||| || |||| |||||||||||| ||||| Sbjct: 1010 cttctcgaccaactcgttcattgtgcttgaacatttagtgaccattgcaaggtaggtcat 951 Query: 425 gaggagggtgtcgttgtattccgttaagaaatcatcttggaatttctccgattccatagc 484 |||||| ||||||||||||||| ||||||| || ||||||||||||| || |||||||| Sbjct: 950 gaggagagtgtcgttgtattccattaagaagtcgtcttggaatttctgtgactccatagc 891 Query: 485 tggcagtcttcttacgaggcttgag 509 ||| || |||||||||||||||||| Sbjct: 890 tggtagccttcttacgaggcttgag 866 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 315 gcacctcggcctcctctcctg 335 ||||||||||||||||||||| Sbjct: 1202 gcacctcggcctcctctcctg 1182
>gb|AY104920.1| Zea mays PCO100740 mRNA sequence Length = 1562 Score = 216 bits (109), Expect = 5e-53 Identities = 181/205 (88%) Strand = Plus / Minus Query: 305 ctacatgaaagcacctcggcctcctctcctggcaggggatctctcatacgtggtgttaaa 364 |||||||||||||||||||||||||||||||| || | ||||||||| | ||||| | Sbjct: 1150 ctacatgaaagcacctcggcctcctctcctggtagtcggtctctcatagcttgtgttgat 1091 Query: 365 cttctcgaccaactcgttcattgtgcttgaacagttcgtgaacattgcaaggtaagtcat 424 |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 1090 tttctcgaccaactcattcattgtgcttgaacagttagtgaacattgccaggtaagtcat 1031 Query: 425 gaggagggtgtcgttgtattccgttaagaaatcatcttggaatttctccgattccatagc 484 |||||| ||||||||||||||| |||| || |||||||||||||||| |||||| |||| Sbjct: 1030 gaggagagtgtcgttgtattccattaaaaagtcatcttggaatttctgtgattccgtagc 971 Query: 485 tggcagtcttcttacgaggcttgag 509 || || |||||||| ||||||||| Sbjct: 970 cggtagccttcttacaaggcttgag 946
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 303 atctacatgaaagcacctcggcctcctctcctggcaggggatctctcatacgtggtgtta 362 ||||||||||||||||||||||||||||||||||||| || ||||| || || | |||| Sbjct: 24674317 atctacatgaaagcacctcggcctcctctcctggcagtcgacctctcgtatgtcgcgtta 24674376 Query: 363 aacttctcgaccaactcgttcattgtgct 391 ||||||||||||| ||| ||||||||||| Sbjct: 24674377 aacttctcgaccagctcattcattgtgct 24674405 Score = 89.7 bits (45), Expect = 8e-15 Identities = 54/57 (94%) Strand = Plus / Plus Query: 390 cttgaacagttcgtgaacattgcaaggtaagtcatgaggagggtgtcgttgtattcc 446 ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 24674691 cttgaacagttagtgaacatagcaaggtaagtcatgaggagggtgtcattgtattcc 24674747 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 456 tcatcttggaatttctccgattccatagctggcagtcttcttacgaggcttgag 509 |||||||||||||| || || ||||| ||||| || |||||||| ||||||||| Sbjct: 24674841 tcatcttggaatttttctgactccattgctggtagccttcttactaggcttgag 24674894
>dbj|AP003873.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1118_A06 Length = 92836 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 303 atctacatgaaagcacctcggcctcctctcctggcaggggatctctcatacgtggtgtta 362 ||||||||||||||||||||||||||||||||||||| || ||||| || || | |||| Sbjct: 46621 atctacatgaaagcacctcggcctcctctcctggcagtcgacctctcgtatgtcgcgtta 46680 Query: 363 aacttctcgaccaactcgttcattgtgct 391 ||||||||||||| ||| ||||||||||| Sbjct: 46681 aacttctcgaccagctcattcattgtgct 46709 Score = 89.7 bits (45), Expect = 8e-15 Identities = 54/57 (94%) Strand = Plus / Plus Query: 390 cttgaacagttcgtgaacattgcaaggtaagtcatgaggagggtgtcgttgtattcc 446 ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 46995 cttgaacagttagtgaacatagcaaggtaagtcatgaggagggtgtcattgtattcc 47051 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 456 tcatcttggaatttctccgattccatagctggcagtcttcttacgaggcttgag 509 |||||||||||||| || || ||||| ||||| || |||||||| ||||||||| Sbjct: 47145 tcatcttggaatttttctgactccattgctggtagccttcttactaggcttgag 47198
>emb|AL590403.13| Human DNA sequence from clone RP13-459B11 on chromosome 6 Contains the GRM4 gene for glutamate receptor (metabotropic 4) and a CpG island, complete sequence Length = 118771 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 321 cggcctcctctcctggcagggga 343 ||||||||||||||||||||||| Sbjct: 58726 cggcctcctctcctggcagggga 58704 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 gcctcctctcctggcagggga 343 ||||||||||||||||||||| Sbjct: 58659 gcctcctctcctggcagggga 58639
>gb|AC107204.4| Homo sapiens 3p BAC RP11-655A17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170799 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 269 caaaacctcagctgcagcagg 289 ||||||||||||||||||||| Sbjct: 151927 caaaacctcagctgcagcagg 151947
>gb|AC118621.6| Mus musculus chromosome 7, clone RP24-63H14, complete sequence Length = 230898 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 gagtcattaatccaacccag 153 |||||||||||||||||||| Sbjct: 104400 gagtcattaatccaacccag 104419
>gb|AC167548.1| Mus musculus chromosome 18, clone wi1-1164C4, complete sequence Length = 41219 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 accgatctacatgaaagcac 318 |||||||||||||||||||| Sbjct: 27408 accgatctacatgaaagcac 27427
>gb|U12964.1| Caenorhabditis elegans cosmid F26F4, complete sequence Length = 32365 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ggataagaagattgaaaagt 176 |||||||||||||||||||| Sbjct: 13253 ggataagaagattgaaaagt 13234
>ref|XM_414316.1| PREDICTED: Gallus gallus LOC415973 (LOC415973), mRNA Length = 3578 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 cagagaggataagaagattgaaaa 174 ||||||| |||||||||||||||| Sbjct: 3507 cagagagcataagaagattgaaaa 3530
>gb|AC124358.4| Mus musculus BAC clone RP24-491B24 from chromosome 3, complete sequence Length = 161119 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 atgggaactattttcaaaatctca 251 ||||||||||||||||| |||||| Sbjct: 18163 atgggaactattttcaagatctca 18140
>gb|AC112655.4| Homo sapiens X BAC RP11-286G7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114148 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 atgggaactattttcaaaat 247 |||||||||||||||||||| Sbjct: 55914 atgggaactattttcaaaat 55895
>emb|BX572646.11| Zebrafish DNA sequence from clone DKEY-245O11 in linkage group 18, complete sequence Length = 116953 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 aagaaatcatcttggaattt 469 |||||||||||||||||||| Sbjct: 40824 aagaaatcatcttggaattt 40843
>emb|BX537322.5| Zebrafish DNA sequence from clone CH211-80L5 in linkage group 1, complete sequence Length = 65076 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 gtaagtcatgaggagggtgt 435 |||||||||||||||||||| Sbjct: 49720 gtaagtcatgaggagggtgt 49701
>emb|CR524392.1| Gallus gallus finished cDNA, clone ChEST275g2 Length = 1648 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 cagagaggataagaagattgaaaa 174 ||||||| |||||||||||||||| Sbjct: 700 cagagagcataagaagattgaaaa 723
>gb|AC026708.6| Homo sapiens chromosome 5 clone CTD-2078B5, complete sequence Length = 142047 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 attttgctgagctaaccatttgaa 25 ||||||||||| |||||||||||| Sbjct: 50140 attttgctgaggtaaccatttgaa 50163
>gb|AC157941.4| Mus musculus BAC clone RP24-253I2 from chromosome 3, complete sequence Length = 204323 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 atgggaactattttcaaaatctca 251 ||||||||||||||||| |||||| Sbjct: 47936 atgggaactattttcaagatctca 47959
>ref|NM_065625.2| Caenorhabditis elegans NHL (ring finger b-box coiled coil) domain containing family member (nhl-2) (nhl-2) mRNA, complete cds Length = 3735 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 ggataagaagattgaaaagt 176 |||||||||||||||||||| Sbjct: 87 ggataagaagattgaaaagt 106
>gb|AC136777.8| Homo sapiens chromosome 8, clone RP11-63E5, complete sequence Length = 175263 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 agaaatcatcttggaatttc 470 |||||||||||||||||||| Sbjct: 129995 agaaatcatcttggaatttc 129976
>gb|AC103954.9| Homo sapiens chromosome 8, clone CTA-366D10, complete sequence Length = 169754 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 agaaatcatcttggaatttc 470 |||||||||||||||||||| Sbjct: 122461 agaaatcatcttggaatttc 122442
>gb|AC110274.5| Homo sapiens chromosome 8, clone RP11-161B15, complete sequence Length = 152802 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 agaaatcatcttggaatttc 470 |||||||||||||||||||| Sbjct: 23722 agaaatcatcttggaatttc 23703
>emb|AL929093.6| Zebrafish DNA sequence from clone CH211-149P10, complete sequence Length = 177248 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 gtaagtcatgaggagggtgt 435 |||||||||||||||||||| Sbjct: 162688 gtaagtcatgaggagggtgt 162707
>gb|AC004908.1|AC004908 Homo sapiens PAC clone RP5-855D21, complete sequence Length = 138251 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 agaaatcatcttggaatttc 470 |||||||||||||||||||| Sbjct: 137054 agaaatcatcttggaatttc 137073
>emb|BX465207.14| Zebrafish DNA sequence from clone DKEY-103I16 in linkage group 18, complete sequence Length = 265632 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 aagaaatcatcttggaattt 469 |||||||||||||||||||| Sbjct: 125459 aagaaatcatcttggaattt 125478
>emb|AL929190.3| Zebrafish DNA sequence from clone DKEY-77N11, complete sequence Length = 150892 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 gtaagtcatgaggagggtgt 435 |||||||||||||||||||| Sbjct: 111850 gtaagtcatgaggagggtgt 111831 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,228,588 Number of Sequences: 3902068 Number of extensions: 4228588 Number of successful extensions: 75423 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75336 Number of HSP's gapped (non-prelim): 86 length of query: 510 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 488 effective length of database: 17,147,199,772 effective search space: 8367833488736 effective search space used: 8367833488736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)