| Clone Name | rbags33i20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK066459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066N15, full insert sequence Length = 848 Score = 274 bits (138), Expect = 3e-70 Identities = 296/349 (84%), Gaps = 6/349 (1%) Strand = Plus / Minus Query: 271 ctcagtgcttgtgctttggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgc 330 |||||||||||||||| ||||| || || |||||||||||||||||||| || || | | Sbjct: 554 ctcagtgcttgtgcttcggcttttttactatcatcacggtgcagtgcgcatgatgagaac 495 Query: 331 agtagtcgctcacacttccaagaacagcccttttgattgctccatagccatggttgccca 390 ||||||| ||||| |||||||||||||| | ||| |||||||||||||||||| | || | Sbjct: 494 agtagtcactcacgcttccaagaacagctcgtttaattgctccatagccatggcttccga 435 Query: 391 caaccagcatctctgcgtgatgcctttccaccgcctcacagaggacgttccttgcatccc 450 |||||| |||||| || |||||||| || || | |||||| || || ||||| ||||||| Sbjct: 434 caaccaacatctccgcctgatgcctctcaacagactcacaaagaacattcctggcatccc 375 Query: 451 cctccaccacttcgaagacaccatcgctcacctgcgcctgcgcgcagagctccttggcct 510 | |||| |||||| || | | |||| |||||||| || |||||||||| |||||| Sbjct: 374 cttccagcacttcaaacagagcatcactcacctgggc------gcagagctccctggcct 321 Query: 511 tgtcgatgacgcgcagcgagctccgcttcaggtccgcttccacgaacggcagcacgtccg 570 | ||||||||||||| |||||| |||||||||||| ||||||||||||||||| |||| Sbjct: 320 tctcgatgacgcgcatggagctcttcttcaggtccgcctccacgaacggcagcacatccg 261 Query: 571 cggcacctggtccggcgaggccgacggcggacgcggcggtgggcttggc 619 |||| ||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 260 cggcgcctgggccggcgaggccgacggcggaggcggcggtgggcttggc 212
>dbj|AK070150.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047P03, full insert sequence Length = 888 Score = 184 bits (93), Expect = 2e-43 Identities = 144/161 (89%) Strand = Plus / Minus Query: 282 tgctttggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctc 341 ||||| ||| ||||||| ||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 549 tgcttgggcctcttcacgatcatcacggtgcagtgcgcgtgatggctgcagtagtcgctc 490 Query: 342 acacttccaagaacagcccttttgattgctccatagccatggttgcccacaaccagcatc 401 || || ||||||||||||||||| ||| |||||||||||| |||||||||||||||| Sbjct: 489 acgctcccaagaacagcccttttccatgccccatagccatggctgcccacaaccagcata 430 Query: 402 tctgcgtgatgcctttccaccgcctcacagaggacgttcct 442 ||||| ||||||||||| || ||||||||||||| |||||| Sbjct: 429 tctgcatgatgcctttcaactgcctcacagaggatgttcct 389
>gb|BT016471.1| Zea mays clone Contig304 mRNA sequence Length = 887 Score = 149 bits (75), Expect = 1e-32 Identities = 150/175 (85%) Strand = Plus / Plus Query: 282 tgctttggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctc 341 ||||| |||||||| || ||||||||||||||||||||||| |||| |||||||||||| Sbjct: 282 tgcttgggcttctttactatcatcacggtgcagtgcgcgtgatgggcacagtagtcgctc 341 Query: 342 acacttccaagaacagcccttttgattgctccatagccatggttgcccacaaccagcatc 401 ||||||||||||||||||||||| || ||||| || |||||| |||| || || |||||| Sbjct: 342 acacttccaagaacagcccttttaatggctccgtaaccatggctgccgacgacgagcatc 401 Query: 402 tctgcgtgatgcctttccaccgcctcacagaggacgttccttgcatccccctcca 456 || || ||||| || || ||||| |||||||||||||| || |||||||||| Sbjct: 402 tcggccccgtgcctctcgacagcctcgcagaggacgttcctagcgtccccctcca 456 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Plus Query: 534 cgcttcaggtccgcttccacgaacggcagcacgtccgcggcacctggtccggcgaggccg 593 ||||| || ||||| |||||| |||||||||| |||||||| ||||| |||||||||||| Sbjct: 528 cgcttgagatccgcctccacgtacggcagcacatccgcggcgcctgggccggcgaggccg 587 Query: 594 acggcggacgcggcggtgggcttggc 619 |||||||| |||||||| |||||||| Sbjct: 588 acggcggaggcggcggtaggcttggc 613
>gb|AY109561.1| Zea mays CL6161_2 mRNA sequence Length = 1379 Score = 137 bits (69), Expect = 5e-29 Identities = 138/161 (85%) Strand = Plus / Minus Query: 282 tgctttggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctc 341 ||||| |||||||| || ||||||||||||||||||||||| |||| |||||||||||| Sbjct: 1011 tgcttgggcttctttactatcatcacggtgcagtgcgcgtgatgggcacagtagtcgctc 952 Query: 342 acacttccaagaacagcccttttgattgctccatagccatggttgcccacaaccagcatc 401 ||||||||||||||||||||||| || ||||| || |||||| |||| || || |||||| Sbjct: 951 acacttccaagaacagcccttttaatggctccgtaaccatggctgccgacgacgagcatc 892 Query: 402 tctgcgtgatgcctttccaccgcctcacagaggacgttcct 442 || || ||||| || || ||||| |||||||||||||| Sbjct: 891 tcggccccgtgcctctcgacagcctcgcagaggacgttcct 851
>gb|BT018800.1| Zea mays clone EL01N0529C05.d mRNA sequence Length = 1674 Score = 111 bits (56), Expect = 3e-21 Identities = 74/80 (92%) Strand = Plus / Minus Query: 282 tgctttggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctc 341 ||||| |||||||| || ||||||||||||||||||||||| |||| |||||||||||| Sbjct: 1397 tgcttgggcttctttactatcatcacggtgcagtgcgcgtgatgggcacagtagtcgctc 1338 Query: 342 acacttccaagaacagccct 361 |||||||||||||||||||| Sbjct: 1337 acacttccaagaacagccct 1318 Score = 99.6 bits (50), Expect = 1e-17 Identities = 77/86 (89%) Strand = Plus / Minus Query: 534 cgcttcaggtccgcttccacgaacggcagcacgtccgcggcacctggtccggcgaggccg 593 ||||| || ||||| |||||| |||||||||| |||||||| ||||| |||||||||||| Sbjct: 295 cgcttgagatccgcctccacgtacggcagcacatccgcggcgcctgggccggcgaggccg 236 Query: 594 acggcggacgcggcggtgggcttggc 619 |||||||| |||||||| |||||||| Sbjct: 235 acggcggaggcggcggtaggcttggc 210 Score = 46.1 bits (23), Expect = 0.14 Identities = 83/103 (80%) Strand = Plus / Minus Query: 354 acagcccttttgattgctccatagccatggttgcccacaaccagcatctctgcgtgatgc 413 |||| |||||| || ||||| || |||||| |||| || || |||||||| || ||| Sbjct: 469 acagaccttttaatggctccgtaaccatggctgccgacgacgagcatctcggccccgtgc 410 Query: 414 ctttccaccgcctcacagaggacgttccttgcatccccctcca 456 || || || ||||| |||||||||||||| || |||||||||| Sbjct: 409 ctctcgacagcctcgcagaggacgttcctagcgtccccctcca 367
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 103 bits (52), Expect = 7e-19 Identities = 79/88 (89%) Strand = Plus / Plus Query: 487 cctgcgcgcagagctccttggccttgtcgatgacgcgcagcgagctccgcttcaggtccg 546 |||| |||||||||||| ||||||| ||||||||||||| |||||| ||||||||||| Sbjct: 22464999 cctgggcgcagagctccctggccttctcgatgacgcgcatggagctcttcttcaggtccg 22465058 Query: 547 cttccacgaacggcagcacgtccgcggc 574 | ||||||||||||||||| |||||||| Sbjct: 22465059 cctccacgaacggcagcacatccgcggc 22465086 Score = 103 bits (52), Expect = 7e-19 Identities = 73/80 (91%) Strand = Plus / Plus Query: 282 tgctttggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctc 341 ||||| ||| ||||||| ||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 22461843 tgcttgggcctcttcacgatcatcacggtgcagtgcgcgtgatggctgcagtagtcgctc 22461902 Query: 342 acacttccaagaacagccct 361 || || |||||||||||||| Sbjct: 22461903 acgctcccaagaacagccct 22461922 Score = 93.7 bits (47), Expect = 7e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 372 ccatagccatggttgcccacaaccagcatctctgcgtgatgcctttccaccgcctcacag 431 |||||||||||| |||||||||||||||| ||||| ||||||||||| || ||||||||| Sbjct: 22462165 ccatagccatggctgcccacaaccagcatatctgcatgatgcctttcaactgcctcacag 22462224 Query: 432 aggacgttcct 442 |||| |||||| Sbjct: 22462225 aggatgttcct 22462235 Score = 87.7 bits (44), Expect = 4e-14 Identities = 77/88 (87%) Strand = Plus / Plus Query: 271 ctcagtgcttgtgctttggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgc 330 |||||||||||||||| ||||| || || |||||||||||||||||||| || || | | Sbjct: 22463367 ctcagtgcttgtgcttcggcttttttactatcatcacggtgcagtgcgcatgatgagaac 22463426 Query: 331 agtagtcgctcacacttccaagaacagc 358 ||||||| ||||| |||||||||||||| Sbjct: 22463427 agtagtcactcacgcttccaagaacagc 22463454 Score = 73.8 bits (37), Expect = 6e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 575 acctggtccggcgaggccgacggcggacgcggcggtgggcttggc 619 |||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 22465177 acctgggccggcgaggccgacggcggaggcggcggtgggcttggc 22465221 Score = 71.9 bits (36), Expect = 2e-09 Identities = 99/120 (82%) Strand = Plus / Plus Query: 366 attgctccatagccatggttgcccacaaccagcatctctgcgtgatgcctttccaccgcc 425 |||||||||||||||||| | || ||||||| |||||| || |||||||| || || | | Sbjct: 22464258 attgctccatagccatggcttccgacaaccaacatctccgcctgatgcctctcaacagac 22464317 Query: 426 tcacagaggacgttccttgcatccccctccaccacttcgaagacaccatcgctcacctgc 485 ||||| || || ||||| |||||||| |||| |||||| || | | |||| ||||||||| Sbjct: 22464318 tcacaaagaacattcctggcatccccttccagcacttcaaacagagcatcactcacctgc 22464377
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 103 bits (52), Expect = 7e-19 Identities = 79/88 (89%) Strand = Plus / Plus Query: 487 cctgcgcgcagagctccttggccttgtcgatgacgcgcagcgagctccgcttcaggtccg 546 |||| |||||||||||| ||||||| ||||||||||||| |||||| ||||||||||| Sbjct: 22393344 cctgggcgcagagctccctggccttctcgatgacgcgcatggagctcttcttcaggtccg 22393403 Query: 547 cttccacgaacggcagcacgtccgcggc 574 | ||||||||||||||||| |||||||| Sbjct: 22393404 cctccacgaacggcagcacatccgcggc 22393431 Score = 103 bits (52), Expect = 7e-19 Identities = 73/80 (91%) Strand = Plus / Plus Query: 282 tgctttggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctc 341 ||||| ||| ||||||| ||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 22390188 tgcttgggcctcttcacgatcatcacggtgcagtgcgcgtgatggctgcagtagtcgctc 22390247 Query: 342 acacttccaagaacagccct 361 || || |||||||||||||| Sbjct: 22390248 acgctcccaagaacagccct 22390267 Score = 93.7 bits (47), Expect = 7e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 372 ccatagccatggttgcccacaaccagcatctctgcgtgatgcctttccaccgcctcacag 431 |||||||||||| |||||||||||||||| ||||| ||||||||||| || ||||||||| Sbjct: 22390510 ccatagccatggctgcccacaaccagcatatctgcatgatgcctttcaactgcctcacag 22390569 Query: 432 aggacgttcct 442 |||| |||||| Sbjct: 22390570 aggatgttcct 22390580 Score = 87.7 bits (44), Expect = 4e-14 Identities = 77/88 (87%) Strand = Plus / Plus Query: 271 ctcagtgcttgtgctttggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgc 330 |||||||||||||||| ||||| || || |||||||||||||||||||| || || | | Sbjct: 22391712 ctcagtgcttgtgcttcggcttttttactatcatcacggtgcagtgcgcatgatgagaac 22391771 Query: 331 agtagtcgctcacacttccaagaacagc 358 ||||||| ||||| |||||||||||||| Sbjct: 22391772 agtagtcactcacgcttccaagaacagc 22391799 Score = 73.8 bits (37), Expect = 6e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 575 acctggtccggcgaggccgacggcggacgcggcggtgggcttggc 619 |||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 22393522 acctgggccggcgaggccgacggcggaggcggcggtgggcttggc 22393566 Score = 71.9 bits (36), Expect = 2e-09 Identities = 99/120 (82%) Strand = Plus / Plus Query: 366 attgctccatagccatggttgcccacaaccagcatctctgcgtgatgcctttccaccgcc 425 |||||||||||||||||| | || ||||||| |||||| || |||||||| || || | | Sbjct: 22392603 attgctccatagccatggcttccgacaaccaacatctccgcctgatgcctctcaacagac 22392662 Query: 426 tcacagaggacgttccttgcatccccctccaccacttcgaagacaccatcgctcacctgc 485 ||||| || || ||||| |||||||| |||| |||||| || | | |||| ||||||||| Sbjct: 22392663 tcacaaagaacattcctggcatccccttccagcacttcaaacagagcatcactcacctgc 22392722
>emb|AL732640.4|CNS08C9F Oryza sativa chromosome 12, . BAC OSJNBa0022K16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183414 Score = 103 bits (52), Expect = 7e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 282 tgctttggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctc 341 ||||| ||| ||||||| ||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 45691 tgcttgggcctcttcacgatcatcacggtgcagtgcgcgtgatggctgcagtagtcgctc 45632 Query: 342 acacttccaagaacagccct 361 || || |||||||||||||| Sbjct: 45631 acgctcccaagaacagccct 45612 Score = 103 bits (52), Expect = 7e-19 Identities = 79/88 (89%) Strand = Plus / Minus Query: 487 cctgcgcgcagagctccttggccttgtcgatgacgcgcagcgagctccgcttcaggtccg 546 |||| |||||||||||| ||||||| ||||||||||||| |||||| ||||||||||| Sbjct: 42535 cctgggcgcagagctccctggccttctcgatgacgcgcatggagctcttcttcaggtccg 42476 Query: 547 cttccacgaacggcagcacgtccgcggc 574 | ||||||||||||||||| |||||||| Sbjct: 42475 cctccacgaacggcagcacatccgcggc 42448 Score = 93.7 bits (47), Expect = 7e-16 Identities = 65/71 (91%) Strand = Plus / Minus Query: 372 ccatagccatggttgcccacaaccagcatctctgcgtgatgcctttccaccgcctcacag 431 |||||||||||| |||||||||||||||| ||||| ||||||||||| || ||||||||| Sbjct: 45369 ccatagccatggctgcccacaaccagcatatctgcatgatgcctttcaactgcctcacag 45310 Query: 432 aggacgttcct 442 |||| |||||| Sbjct: 45309 aggatgttcct 45299 Score = 87.7 bits (44), Expect = 4e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 271 ctcagtgcttgtgctttggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgc 330 |||||||||||||||| ||||| || || |||||||||||||||||||| || || | | Sbjct: 44167 ctcagtgcttgtgcttcggcttttttactatcatcacggtgcagtgcgcatgatgagaac 44108 Query: 331 agtagtcgctcacacttccaagaacagc 358 ||||||| ||||| |||||||||||||| Sbjct: 44107 agtagtcactcacgcttccaagaacagc 44080 Score = 73.8 bits (37), Expect = 6e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 575 acctggtccggcgaggccgacggcggacgcggcggtgggcttggc 619 |||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 42357 acctgggccggcgaggccgacggcggaggcggcggtgggcttggc 42313 Score = 71.9 bits (36), Expect = 2e-09 Identities = 99/120 (82%) Strand = Plus / Minus Query: 366 attgctccatagccatggttgcccacaaccagcatctctgcgtgatgcctttccaccgcc 425 |||||||||||||||||| | || ||||||| |||||| || |||||||| || || | | Sbjct: 43276 attgctccatagccatggcttccgacaaccaacatctccgcctgatgcctctcaacagac 43217 Query: 426 tcacagaggacgttccttgcatccccctccaccacttcgaagacaccatcgctcacctgc 485 ||||| || || ||||| |||||||| |||| |||||| || | | |||| ||||||||| Sbjct: 43216 tcacaaagaacattcctggcatccccttccagcacttcaaacagagcatcactcacctgc 43157
>gb|AY589695.1| Mirabilis jalapa clone FS-25 putative universal stress protein mRNA, partial cds Length = 534 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 288 ggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctcacactt 347 |||||||||||||| || || | |||||| || || || | ||||||||||||||||| Sbjct: 521 ggcttcttcacaattattacagagcagtgagcatgatgtgcacagtagtcgctcacactg 462 Query: 348 ccaagaacagcccttttgattgctccat 375 || ||||||||||| ||||||||||||| Sbjct: 461 cctagaacagccctcttgattgctccat 434
>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete sequence; splicing factor SF2-like protein (SF2) and universal stress protein (USP1) genes and Hv receptor-kinase-like pseudogene, complete cds; and retrotransposons Sandra6 and Sandra7, complete sequence Length = 82293 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 300 atcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctcacacttccaagaa 354 ||||| |||| ||||||||||||||||| ||||||||||||||| || ||||||| Sbjct: 43130 atcatgacggagcagtgcgcgtggtgggcgcagtagtcgctcacgctcccaagaa 43184
>ref|XM_479478.1| Oryza sativa (japonica cultivar-group), mRNA Length = 846 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 300 atcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctcacacttccaagaacagcc 359 ||||| |||| ||||||||||||||||| |||||||||||| || || || || | ||| Sbjct: 652 atcatgacggagcagtgcgcgtggtgggcgcagtagtcgctgacgctccccaggaaggcc 593 Query: 360 cttttgattgctccatagccatggttgcc 388 || |||||||| || ||||||||| |||| Sbjct: 592 ctcttgattgcgccgtagccatggctgcc 564
>gb|AY224503.1| Oryza sativa (japonica cultivar-group) isolate 31158 unknown mRNA Length = 523 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 300 atcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctcacacttccaagaacagcc 359 ||||| |||| ||||||||||||||||| |||||||||||| || || || || | ||| Sbjct: 456 atcatgacggagcagtgcgcgtggtgggcgcagtagtcgctgacgctccccaggaaggcc 397 Query: 360 cttttgattgctccatagccatggttgcc 388 || |||||||| || ||||||||| |||| Sbjct: 396 ctcttgattgcgccgtagccatggctgcc 368
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 300 atcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctcacacttccaagaacagcc 359 ||||| |||| ||||||||||||||||| |||||||||||| || || || || | ||| Sbjct: 28415782 atcatgacggagcagtgcgcgtggtgggcgcagtagtcgctgacgctccccaggaaggcc 28415723 Query: 360 cttttgattgctccatagccatggttgcc 388 || |||||||| || ||||||||| |||| Sbjct: 28415722 ctcttgattgcgccgtagccatggctgcc 28415694 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 592 cgacggcggacgcggcggtg 611 |||||||||||||||||||| Sbjct: 27284374 cgacggcggacgcggcggtg 27284355
>gb|AF491815.1| Oryza sativa (indica cultivar-group) putative universal stress protein USP1 (Usp1) mRNA, complete cds Length = 630 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 300 atcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctcacacttccaagaacagcc 359 ||||| |||| ||||||||||||||||| |||||||||||| || || || || | ||| Sbjct: 560 atcatgacggagcagtgcgcgtggtgggcgcagtagtcgctgacgctccccaggaaggcc 501 Query: 360 cttttgattgctccatagccatggttgcc 388 || |||||||| || ||||||||| |||| Sbjct: 500 ctcttgattgcgccgtagccatggctgcc 472
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0470D12 Length = 157248 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 300 atcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctcacacttccaagaacagcc 359 ||||| |||| ||||||||||||||||| |||||||||||| || || || || | ||| Sbjct: 141345 atcatgacggagcagtgcgcgtggtgggcgcagtagtcgctgacgctccccaggaaggcc 141286 Query: 360 cttttgattgctccatagccatggttgcc 388 || |||||||| || ||||||||| |||| Sbjct: 141285 ctcttgattgcgccgtagccatggctgcc 141257
>dbj|AK073356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028K22, full insert sequence Length = 937 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 300 atcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctcacacttccaagaacagcc 359 ||||| |||| ||||||||||||||||| |||||||||||| || || || || | ||| Sbjct: 743 atcatgacggagcagtgcgcgtggtgggcgcagtagtcgctgacgctccccaggaaggcc 684 Query: 360 cttttgattgctccatagccatggttgcc 388 || |||||||| || ||||||||| |||| Sbjct: 683 ctcttgattgcgccgtagccatggctgcc 655
>dbj|AK064061.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-F10, full insert sequence Length = 846 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 300 atcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctcacacttccaagaacagcc 359 ||||| |||| ||||||||||||||||| |||||||||||| || || || || | ||| Sbjct: 652 atcatgacggagcagtgcgcgtggtgggcgcagtagtcgctgacgctccccaggaaggcc 593 Query: 360 cttttgattgctccatagccatggttgcc 388 || |||||||| || ||||||||| |||| Sbjct: 592 ctcttgattgcgccgtagccatggctgcc 564
>ref|NM_130339.2| Arabidopsis thaliana unknown protein AT2G47710 mRNA, complete cds Length = 809 Score = 54.0 bits (27), Expect = 6e-04 Identities = 87/107 (81%) Strand = Plus / Minus Query: 288 ggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctcacactt 347 ||||||||||| |||||||| | ||| || || || || | ||||||||| ||| ||| Sbjct: 582 ggcttcttcacgatcatcaccgagcaatgagcatgatgagcgcagtagtcactcgtactc 523 Query: 348 ccaagaacagcccttttgattgctccatagccatggttgcccacaac 394 || ||||| ||||| ||||| |||||||| |||||| | |||||||| Sbjct: 522 ccgagaaccgccctcttgatagctccatatccatggcttcccacaac 476
>gb|AC161032.19| Medicago truncatula clone mth2-21b7, complete sequence Length = 130355 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 272 tcagtgcttgtgctttggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgca 331 |||||||||| ||||||||||||||||||||||| ||||| || || || || | || Sbjct: 98746 tcagtgcttggtttttggcttcttcacaatcatcacagtgcaatgagcatgatgagcaca 98687 Query: 332 gtagtcgctcacact 346 |||||| |||||||| Sbjct: 98686 gtagtcactcacact 98672 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 272 tcagtgcttgtgctttggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgca 331 |||||||||| ||||||||||||||||||||||| ||||| || || || || | || Sbjct: 90078 tcagtgcttggtttttggcttcttcacaatcatcacagtgcaatgagcatgatgagcaca 90019 Query: 332 gtagtcgctcacact 346 |||||| |||||||| Sbjct: 90018 gtagtcactcacact 90004
>gb|AY081535.1| Arabidopsis thaliana unknown protein (At2g47710) mRNA, complete cds Length = 529 Score = 54.0 bits (27), Expect = 6e-04 Identities = 87/107 (81%) Strand = Plus / Minus Query: 288 ggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctcacactt 347 ||||||||||| |||||||| | ||| || || || || | ||||||||| ||| ||| Sbjct: 473 ggcttcttcacgatcatcaccgagcaatgagcatgatgagcgcagtagtcactcgtactc 414 Query: 348 ccaagaacagcccttttgattgctccatagccatggttgcccacaac 394 || ||||| ||||| ||||| |||||||| |||||| | |||||||| Sbjct: 413 ccgagaaccgccctcttgatagctccatatccatggcttcccacaac 367
>gb|AY054620.1| Arabidopsis thaliana Unknown protein (At2g47710; F17A22.10) mRNA, complete cds Length = 741 Score = 54.0 bits (27), Expect = 6e-04 Identities = 87/107 (81%) Strand = Plus / Minus Query: 288 ggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctcacactt 347 ||||||||||| |||||||| | ||| || || || || | ||||||||| ||| ||| Sbjct: 582 ggcttcttcacgatcatcaccgagcaatgagcatgatgagcgcagtagtcactcgtactc 523 Query: 348 ccaagaacagcccttttgattgctccatagccatggttgcccacaac 394 || ||||| ||||| ||||| |||||||| |||||| | |||||||| Sbjct: 522 ccgagaaccgccctcttgatagctccatatccatggcttcccacaac 476
>gb|AY429440.1| Gossypium barbadense fiber protein Fb19 mRNA, partial cds Length = 823 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Minus Query: 339 ctcacacttccaagaacagcccttttgattgctccatagccatgg 383 |||||||| |||||||||||||| || || |||||||| |||||| Sbjct: 391 ctcacactgccaagaacagccctctttatagctccataaccatgg 347
>gb|AY086842.1| Arabidopsis thaliana clone 2847 mRNA, complete sequence Length = 787 Score = 50.1 bits (25), Expect = 0.009 Identities = 86/107 (80%) Strand = Plus / Minus Query: 288 ggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgcagtagtcgctcacactt 347 ||||||||||| |||||||| | ||| || || || || | ||||||||| ||| ||| Sbjct: 583 ggcttcttcacgatcatcaccgagcaatgagcatgatgagcgcagtagtcactcgtactc 524 Query: 348 ccaagaacagcccttttgattgctccatagccatggttgcccacaac 394 || ||||| ||||| |||| |||||||| |||||| | |||||||| Sbjct: 523 ccgagaaccgccctcktgatagctccatatccatggcttcccacaac 477
>gb|AY108164.1| Zea mays PCO106673 mRNA sequence Length = 613 Score = 46.1 bits (23), Expect = 0.14 Identities = 47/55 (85%) Strand = Plus / Minus Query: 286 ttggcttcttcacaatcatcacggtgcagtgcgcgtggtgggtgcagtagtcgct 340 |||||| ||| || ||||| |||| |||| |||||||||| | |||||||||||| Sbjct: 214 ttggctgcttgactatcatgacggagcagggcgcgtggtgtgcgcagtagtcgct 160
>ref|NM_100846.3| Arabidopsis thaliana unknown protein AT1G09740 mRNA, complete cds Length = 818 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 318 gcgtggtgggtgcagtagtcgctcacacttccaagaa 354 ||||||| ||||||||||| ||| |||||||| |||| Sbjct: 538 gcgtggttggtgcagtagttgcttacacttcccagaa 502
>ref|NM_193763.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 504 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 488 ctgcgcgcagagctccttggccttgtcga 516 ||||||||||| || |||||||||||||| Sbjct: 300 ctgcgcgcagatctgcttggccttgtcga 272
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 506 ggccttgtcgatgacgcgcagcgag 530 |||||||||||||| |||||||||| Sbjct: 3360100 ggccttgtcgatgatgcgcagcgag 3360076
>gb|AC121511.12| Mus musculus chromosome 18, clone RP24-389K16, complete sequence Length = 151000 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 ttaaatttacatatacataca 54 ||||||||||||||||||||| Sbjct: 94454 ttaaatttacatatacataca 94434
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 488 ctgcgcgcagagctccttggccttgtcga 516 ||||||||||| || |||||||||||||| Sbjct: 17989201 ctgcgcgcagatctgcttggccttgtcga 17989229
>gb|BT005843.1| Arabidopsis thaliana At1g09740 gene, complete cds Length = 516 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 318 gcgtggtgggtgcagtagtcgctcacacttccaagaa 354 ||||||| ||||||||||| ||| |||||||| |||| Sbjct: 467 gcgtggttggtgcagtagttgcttacacttcccagaa 431
>gb|AC011995.8| Homo sapiens BAC clone RP11-163G21 from 2, complete sequence Length = 151605 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 443 tgcatccccctccaccacttc 463 ||||||||||||||||||||| Sbjct: 18707 tgcatccccctccaccacttc 18687
>dbj|AP003213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0054L14 Length = 150022 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 488 ctgcgcgcagagctccttggccttgtcga 516 ||||||||||| || |||||||||||||| Sbjct: 16442 ctgcgcgcagatctgcttggccttgtcga 16470
>dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0520B06 Length = 142667 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 488 ctgcgcgcagagctccttggccttgtcga 516 ||||||||||| || |||||||||||||| Sbjct: 109036 ctgcgcgcagatctgcttggccttgtcga 109064
>dbj|AK070914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069J05, full insert sequence Length = 1033 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 488 ctgcgcgcagagctccttggccttgtcga 516 ||||||||||| || |||||||||||||| Sbjct: 543 ctgcgcgcagatctgcttggccttgtcga 515
>emb|BX663516.23| Zebrafish DNA sequence from clone DKEY-16F21 in linkage group 10, complete sequence Length = 183367 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 79 caatcacaaataacagtgttctgat 103 ||||||||||||||| ||||||||| Sbjct: 87887 caatcacaaataacattgttctgat 87863
>gb|AC107689.7| Mus musculus chromosome 3, clone RP24-283F19, complete sequence Length = 168704 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 494 gcagagctccttggccttgtc 514 ||||||||||||||||||||| Sbjct: 50977 gcagagctccttggccttgtc 50957
>gb|AC133519.3| Mus musculus BAC clone RP23-178N8 from chromosome 5, complete sequence Length = 219269 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 29 cttgattaaatttacatatacatac 53 ||||| ||||||||||||||||||| Sbjct: 191135 cttgactaaatttacatatacatac 191159
>gb|AC000132.1|F21M12 Sequence of BAC F21M12 from Arabidopsis thaliana chromosome 1, complete sequence Length = 146505 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 318 gcgtggtgggtgcagtagtcgctcacacttccaagaa 354 ||||||| ||||||||||| ||| |||||||| |||| Sbjct: 42671 gcgtggttggtgcagtagttgcttacacttcccagaa 42635
>ref|NM_101477.2| Arabidopsis thaliana WAKL7 (WALL ASSOCIATED KINASE-LIKE 7) AT1G16090 (WAKL7) mRNA, complete cds Length = 1310 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 283 gctttggcttcttcacaatcatca 306 ||||||||||||||||| |||||| Sbjct: 865 gctttggcttcttcacactcatca 842
>ref|NM_114422.1| Arabidopsis thaliana protein binding / zinc ion binding AT3G45530 mRNA, complete cds Length = 2079 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 167 ctactcttctgaaggtgtgaactgtgac 194 |||||||||| |||||||||||| |||| Sbjct: 1383 ctactcttctaaaggtgtgaactttgac 1410
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 441 cttgcatccccctccaccacttcgaaga 468 |||||||||| | ||||||||||||||| Sbjct: 1993295 cttgcatcccgcaccaccacttcgaaga 1993268
>ref|XM_508218.1| PREDICTED: Pan troglodytes similar to Troponin T, fast skeletal muscle isoforms (Beta TnTF) (LOC450949), mRNA Length = 1114 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 872 cagagctccttggccttgtc 853
>ref|XM_465726.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1269 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 577 ctggtccggcgaggccgacg 596 |||||||||||||||||||| Sbjct: 175 ctggtccggcgaggccgacg 156
>gb|BC050446.1| Homo sapiens troponin T type 3 (skeletal, fast), mRNA (cDNA clone IMAGE:6202013), partial cds Length = 1076 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 655 cagagctccttggccttgtc 636
>gb|BT019997.1| Homo sapiens troponin T3, skeletal, fast mRNA, complete cds Length = 771 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 605 cagagctccttggccttgtc 586
>gb|BT019996.1| Synthetic construct Homo sapiens troponin T3, skeletal, fast mRNA, partial cds Length = 771 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 605 cagagctccttggccttgtc 586
>gb|AF026276.1| Homo sapiens fast skeletal troponin T (TNNT3) gene, complete cds Length = 20369 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 16653 cagagctccttggccttgtc 16634
>gb|AC087731.2| Felis catus clone RP86-459O8, complete sequence Length = 125661 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 tgtacaatgcatgaatctgcaatc 83 ||||||||||| |||||||||||| Sbjct: 59193 tgtacaatgcaggaatctgcaatc 59170
>ref|XM_535597.2| PREDICTED: Canis familiaris similar to testis-specific gene A2 (LOC478420), mRNA Length = 1098 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 592 cgacggcggacgcggcggtg 611 |||||||||||||||||||| Sbjct: 5 cgacggcggacgcggcggtg 24
>ref|XM_543765.2| PREDICTED: Canis familiaris similar to ATP-binding cassette, sub-family C, member 9 isoform SUR2B, transcript variant 1 (LOC486638), mRNA Length = 4650 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ttcacaaacatgcacaaata 230 |||||||||||||||||||| Sbjct: 258 ttcacaaacatgcacaaata 239
>ref|XM_861193.1| PREDICTED: Canis familiaris similar to ATP-binding cassette, sub-family C, member 9 isoform SUR2B, transcript variant 4 (LOC486638), mRNA Length = 4605 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ttcacaaacatgcacaaata 230 |||||||||||||||||||| Sbjct: 258 ttcacaaacatgcacaaata 239
>ref|XM_861178.1| PREDICTED: Canis familiaris similar to ATP-binding cassette, sub-family C, member 9 isoform SUR2B, transcript variant 3 (LOC486638), mRNA Length = 4542 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ttcacaaacatgcacaaata 230 |||||||||||||||||||| Sbjct: 258 ttcacaaacatgcacaaata 239
>ref|XM_847653.1| PREDICTED: Canis familiaris similar to ATP-binding cassette, sub-family C, member 9 isoform SUR2B, transcript variant 2 (LOC486638), mRNA Length = 4650 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ttcacaaacatgcacaaata 230 |||||||||||||||||||| Sbjct: 258 ttcacaaacatgcacaaata 239
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 tcgctcacctgcgcctgcgc 493 |||||||||||||||||||| Sbjct: 1677739 tcgctcacctgcgcctgcgc 1677720
>ref|XM_858046.1| PREDICTED: Canis familiaris similar to Troponin T, fast skeletal muscle (TnTf) (Fast skeletal muscle troponin T) (fTnT), transcript variant 4 (LOC475996), mRNA Length = 1338 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 1001 cagagctccttggccttgtc 982
>ref|XM_533202.2| PREDICTED: Canis familiaris similar to Troponin T, fast skeletal muscle (TnTf) (Fast skeletal muscle troponin T) (fTnT), transcript variant 2 (LOC475996), mRNA Length = 1113 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 776 cagagctccttggccttgtc 757
>ref|XM_858000.1| PREDICTED: Canis familiaris similar to Troponin T, fast skeletal muscle (TnTf) (Fast skeletal muscle troponin T) (fTnT), transcript variant 3 (LOC475996), mRNA Length = 1111 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 776 cagagctccttggccttgtc 757
>gb|AY442932.1| Sinorhizobium meliloti plasmid pRme41a RepA (repA) gene, partial cds; and TraI (traI) and TrbB (trbB) genes, complete cds Length = 2349 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 ggcttcttcacaatcatcac 307 |||||||||||||||||||| Sbjct: 783 ggcttcttcacaatcatcac 802
>emb|CR361562.12| Zebrafish DNA sequence from clone CH211-281H24 in linkage group 8, complete sequence Length = 160720 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 tattcacaaacatgcacaaa 228 |||||||||||||||||||| Sbjct: 66524 tattcacaaacatgcacaaa 66543
>gb|BC062430.1| Homo sapiens troponin T type 3 (skeletal, fast), mRNA (cDNA clone IMAGE:4328022), partial cds Length = 546 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 381 cagagctccttggccttgtc 362
>emb|AL137803.15| Human DNA sequence from clone RP5-819F18 on chromosome 1, complete sequence Length = 59723 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 gttgcccacaaccagcatctctgc 406 |||||||||||||| ||||||||| Sbjct: 55856 gttgcccacaaccaacatctctgc 55879
>gb|AC051649.21| Homo sapiens chromosome 11, clone RP11-534I22, complete sequence Length = 188519 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 63168 cagagctccttggccttgtc 63187
>emb|AL138657.1|ATF9K21 Arabidopsis thaliana DNA chromosome 3, BAC clone F9K21 Length = 110980 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 167 ctactcttctgaaggtgtgaactgtgac 194 |||||||||| |||||||||||| |||| Sbjct: 44442 ctactcttctaaaggtgtgaactttgac 44415
>ref|NM_001001863.1| Sus scrofa troponin T fast skeletal muscle type (TNNT3), mRNA Length = 841 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 659 cagagctccttggccttgtc 640
>gb|AC097381.3| Homo sapiens BAC clone RP11-338K13 from 4, complete sequence Length = 214098 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 attaaatttacatatacata 52 |||||||||||||||||||| Sbjct: 159635 attaaatttacatatacata 159654
>dbj|AB176602.1| Sus scrofa tnnt3 mRNA for troponin T fast skeletal muscle type, complete cds, isoform fTnT4/17 Length = 778 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 596 cagagctccttggccttgtc 577
>dbj|AB176601.1| Sus scrofa tnnt3 mRNA for troponin T fast skeletal muscle type, complete cds, isoform fTnT3/17 Length = 808 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 626 cagagctccttggccttgtc 607
>dbj|AB176600.1| Sus scrofa tnnt3 mRNA for troponin T fast skeletal muscle type, complete cds, isoform fTnT2/17 Length = 826 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 644 cagagctccttggccttgtc 625
>dbj|AB176599.1| Sus scrofa tnnt3 mRNA for troponin T fast skeletal muscle type, complete cds, isoform fTnT1/17 Length = 841 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 659 cagagctccttggccttgtc 640
>dbj|AB176598.1| Sus scrofa tnnt3 mRNA for troponin T fast skeletal muscle type, complete cds, isoform fTnT4/16 Length = 778 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 596 cagagctccttggccttgtc 577
>dbj|AB176597.1| Sus scrofa tnnt3 mRNA for troponin T fast skeletal muscle type, complete cds, isoform fTnT3/16 Length = 808 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 626 cagagctccttggccttgtc 607
>dbj|AB176596.1| Sus scrofa tnnt3 mRNA for troponin T fast skeletal muscle type, complete cds, isoform fTnT2/16 Length = 826 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 644 cagagctccttggccttgtc 625
>dbj|AB176595.1| Sus scrofa tnnt3 mRNA for troponin T fast skeletal muscle type, complete cds, isoform fTnT1/16 Length = 841 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 659 cagagctccttggccttgtc 640
>ref|NM_006757.1| Homo sapiens troponin T type 3 (skeletal, fast) (TNNT3), mRNA Length = 1000 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 623 cagagctccttggccttgtc 604
>dbj|AK056968.1| Homo sapiens cDNA FLJ32406 fis, clone SKMUS2000416, highly similar to TROPONIN T, FAST SKELETAL MUSCLE ISOFORM BETA Length = 1254 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 878 cagagctccttggccttgtc 859
>gb|AC009137.8| Homo sapiens chromosome 16 clone RP11-521L9, complete sequence Length = 174751 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 aaatttacatatacatacaa 55 |||||||||||||||||||| Sbjct: 159000 aaatttacatatacatacaa 158981
>gb|AC009027.10| Homo sapiens chromosome 16 clone RP11-123C5, complete sequence Length = 178256 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 aaatttacatatacatacaa 55 |||||||||||||||||||| Sbjct: 118272 aaatttacatatacatacaa 118291
>emb|BX510989.13| Zebrafish DNA sequence from clone CH211-76L23 in linkage group 3, complete sequence Length = 169229 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 ttattcacaaacatgcacaa 227 |||||||||||||||||||| Sbjct: 112401 ttattcacaaacatgcacaa 112420
>emb|CR541927.1| Homo sapiens full open reading frame cDNA clone RZPDo834F1233D for gene TNNT3, troponin T3, skeletal, fast; complete cds, without stopcodon Length = 768 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 605 cagagctccttggccttgtc 586
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 577 ctggtccggcgaggccgacg 596 |||||||||||||||||||| Sbjct: 17066427 ctggtccggcgaggccgacg 17066408
>emb|BX816840.1|CNS0ABRP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH70ZH06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1479 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 283 gctttggcttcttcacaatcatca 306 ||||||||||||||||| |||||| Sbjct: 986 gctttggcttcttcacactcatca 963
>gb|AC097466.2| Homo sapiens BAC clone RP11-26A2 from 4, complete sequence Length = 170321 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 cttgattaaatttacatata 48 |||||||||||||||||||| Sbjct: 139956 cttgattaaatttacatata 139975
>gb|AC017013.8| Homo sapiens BAC clone RP11-141P6 from 4, complete sequence Length = 169978 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 attaaatttacatatacata 52 |||||||||||||||||||| Sbjct: 27935 attaaatttacatatacata 27954
>gb|AC117456.6| Homo sapiens 3 BAC RP11-360P21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173303 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 aaatttacatatacatacaa 55 |||||||||||||||||||| Sbjct: 151181 aaatttacatatacatacaa 151162
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome Length = 1584804 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 aaccagcatctctgcgtgat 411 |||||||||||||||||||| Sbjct: 371585 aaccagcatctctgcgtgat 371604
>dbj|AP004837.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0483C08 Length = 143855 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 577 ctggtccggcgaggccgacg 596 |||||||||||||||||||| Sbjct: 47800 ctggtccggcgaggccgacg 47781
>dbj|AP005322.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0677G01 Length = 137031 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 577 ctggtccggcgaggccgacg 596 |||||||||||||||||||| Sbjct: 117683 ctggtccggcgaggccgacg 117664
>dbj|AP006456.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0030A22 Length = 141096 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 592 cgacggcggacgcggcggtg 611 |||||||||||||||||||| Sbjct: 76242 cgacggcggacgcggcggtg 76223
>emb|AJ566369.2|SSC566369 Sus scrofa partial TNNT3 gene for Troponin T3, fast skeletal, exons 14-15, allele 3 Length = 252 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 183 cagagctccttggccttgtc 164
>emb|AJ566368.2|SSC566368 Sus scrofa partial TNNT3 gene for Troponin T3, fast skeletal, exons 14-15, allele 2 Length = 252 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 183 cagagctccttggccttgtc 164
>emb|AJ566367.2|SSC566367 Sus scrofa partial TNNT3 gene for Troponin T3, fast skeletal, exons 14-15, allele 1 Length = 255 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 186 cagagctccttggccttgtc 167
>emb|BX640689.1|HSM806756 Homo sapiens mRNA; cDNA DKFZp779M2348 (from clone DKFZp779M2348); complete cds Length = 1083 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 681 cagagctccttggccttgtc 662
>gb|AC010924.2|T24D18 Arabidopsis thaliana chromosome 1 BAC T24D18 sequence, complete sequence Length = 80442 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 283 gctttggcttcttcacaatcatca 306 ||||||||||||||||| |||||| Sbjct: 52542 gctttggcttcttcacactcatca 52519
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 catctctgcgtgatgccttt 417 |||||||||||||||||||| Sbjct: 658107 catctctgcgtgatgccttt 658126
>gb|M21984.1|HUMTRT Human (clone PWHTnT16) skeletal muscle Troponin T mRNA, complete cds Length = 1000 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagagctccttggccttgtc 514 |||||||||||||||||||| Sbjct: 623 cagagctccttggccttgtc 604
>dbj|D86074.1| Pinctada fucata mRNA for insoluble protein, complete cds Length = 3331 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 gccgacggcggacgcggcgg 609 |||||||||||||||||||| Sbjct: 293 gccgacggcggacgcggcgg 312 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,073,799 Number of Sequences: 3902068 Number of extensions: 5073799 Number of successful extensions: 125772 Number of sequences better than 10.0: 96 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 125172 Number of HSP's gapped (non-prelim): 597 length of query: 620 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 597 effective length of database: 17,143,297,704 effective search space: 10234548729288 effective search space used: 10234548729288 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)