>ATPQ_ARATH (Q9FT52) ATP synthase D chain, mitochondrial (EC 3.6.3.14)|
          Length = 167

 Score =  233 bits (594), Expect = 4e-61
 Identities = 111/150 (74%), Positives = 125/150 (83%)
 Frame = -2

Query: 632 IDWDGMAKMLVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSKVVDM 453
           IDWDGMAK+LV++EAR+EF+NLRR F++VN QLQTKFSQEP+PIDW+YYRKGIG+ +VD 
Sbjct: 18  IDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPEPIDWDYYRKGIGAGIVDK 77

Query: 452 YKEAYDSIEIPKYVDTVTPRYKPKFDALLVELKEAEKTSLKESXXXXXXXXXXXXXXXXI 273
           YKEAYDSIEIPKYVD VTP YKPKFDALLVELKEAE+ SLKES                +
Sbjct: 78  YKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEKEIADVQEISKKL 137

Query: 272 STMTADEYFAKHPELKKKFDDEMRNDYWGY 183
           STMTADEYF KHPELKKKFDDE+RND WGY
Sbjct: 138 STMTADEYFEKHPELKKKFDDEIRNDNWGY 167

>ATP5H_RAT (P31399) ATP synthase D chain, mitochondrial (EC 3.6.3.14)|
          Length = 160

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = -2

Query: 632 IDWDGMAKMLVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSK-VVD 456
           IDW    +++   +  K   N  +++ +  H      S++P  IDW YYR  +    +VD
Sbjct: 10  IDWVSFVEIMPQNQ--KAIGNALKSWNETFHTRLASLSEKPPAIDWAYYRANVDKPGLVD 67

Query: 455 MYKEAYDSIEIPKYVDTVT 399
            +K  Y++++IP   D  T
Sbjct: 68  DFKNKYNALKIPVPEDKYT 86

>ATP5H_MOUSE (Q9DCX2) ATP synthase D chain, mitochondrial (EC 3.6.3.14)|
          Length = 160

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = -2

Query: 632 IDWDGMAKMLVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSK-VVD 456
           IDW    +++   +  K   N  +++ +  H      S++P  IDW YYR  +    +VD
Sbjct: 10  IDWVSFVEVMPQNQ--KAIGNALKSWNETFHARLASLSEKPPAIDWAYYRANVAKPGLVD 67

Query: 455 MYKEAYDSIEIPKYVDTVT 399
            +++ Y++++IP   D  T
Sbjct: 68  DFEKKYNALKIPVPEDKYT 86

>ATP5H_HUMAN (O75947) ATP synthase D chain, mitochondrial (EC 3.6.3.14)|
          Length = 160

 Score = 34.3 bits (77), Expect = 0.39
 Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = -2

Query: 632 IDWDGMAKMLVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIG-SKVVD 456
           IDW   A+++   +  K  A+  +++ +          + P  IDW YY+  +  + +VD
Sbjct: 10  IDWVAFAEIIPQNQ--KAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAKAGLVD 67

Query: 455 MYKEAYDSIEIPKYVDTVT 399
            +++ ++++++P   D  T
Sbjct: 68  DFEKKFNALKVPVPEDKYT 86

>ATP5H_BOVIN (P13620) ATP synthase D chain, mitochondrial (EC 3.6.3.14)|
          Length = 160

 Score = 33.9 bits (76), Expect = 0.50
 Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = -2

Query: 632 IDWDGMAKMLVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIG-SKVVD 456
           IDW    +++   +  K  AN  +++ +          ++P  IDW YY+  +  + +VD
Sbjct: 10  IDWVAFGEIIPRNQ--KAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVD 67

Query: 455 MYKEAYDSIEIPKYVDTVT 399
            +++ ++++++P   D  T
Sbjct: 68  DFEKKFNALKVPIPEDKYT 86

>D7_AEDAE (P18153) D7 protein precursor (Allergen Aed a 2)|
          Length = 321

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = -2

Query: 596 EEARKEFANLRRTFEDVNHQLQTKFSQEPQPI---DWEYYRKGIGSKVVDMYKEAYDSIE 426
           EE +++F  + +  + +   L    S+EP       W YY+  + S V D +KEA+D  E
Sbjct: 227 EEVKRDFKLVNKDTKALEKVLNDCKSKEPSNAKEKSWHYYKCLVESSVKDDFKEAFDYRE 286

Query: 425 I 423
           +
Sbjct: 287 V 287

>DPOL_EHV1V (Q6S6P1) DNA polymerase (EC 2.7.7.7)|
          Length = 1220

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = +1

Query: 562 RRRLANSFRASSETSIFAMPSQSIAFPALAATSATFFTPLIFGSGSAN 705
           RRR  +   A+SETS  AM SQS AF +         TP   GSG+ +
Sbjct: 635 RRRFDSQADAASETSELAMDSQSHAFDSTDEPDGVDGTPDAAGSGATS 682

>DPOL_EHV1B (P28858) DNA polymerase (EC 2.7.7.7)|
          Length = 1220

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = +1

Query: 562 RRRLANSFRASSETSIFAMPSQSIAFPALAATSATFFTPLIFGSGSAN 705
           RRR  +   A+SETS  AM SQS AF +         TP   GSG+ +
Sbjct: 635 RRRFDSQADAASETSELAMDSQSHAFDSTDEPDGVDGTPDAAGSGATS 682

>CABL2_HUMAN (Q9BTV7) CDK5 and ABL1 enzyme substrate 2 (Interactor with CDK3 2)|
           (Ik3-2)
          Length = 478

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 591 GPEGVRQPPPHLRGRQPPAPDQVLPGT 511
           GP G + PPP    R+PPAP    P T
Sbjct: 65  GPGGEKPPPPPAEAREPPAPPPPEPPT 91

>RS24_PYRFU (Q8U442) 30S ribosomal protein S24e|
          Length = 99

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 23/70 (32%), Positives = 32/70 (45%)
 Frame = -2

Query: 554 EDVNHQLQTKFSQEPQPIDWEYYRKGIGSKVVDMYKEAYDSIEIPKYVDTVTPRYKPKFD 375
           +DV  +L       P+    +Y R   GS +   Y +AYDS E   Y++   P Y    D
Sbjct: 34  KDVKGKLVAMLDLNPETTVIQYIRSYFGSYISKGYAKAYDSKERMLYIE---PEYILIRD 90

Query: 374 ALLVELKEAE 345
             L+E KE E
Sbjct: 91  G-LIEKKEGE 99

>YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative splicing factor|
           YT521) (RA301-binding protein)
          Length = 738

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 357 EGGREDISEGIREDREGDC*NEGDEEKDQHND 262
           EGG ED+ E    D +GD   E DE+ ++  D
Sbjct: 202 EGGEEDVEEDEEVDEDGDDDEEVDEDAEEEED 233

>AATF_RAT (Q9QYW0) Protein AATF (Apoptosis-antagonizing transcription factor)|
          Length = 523

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = -1

Query: 357 EGGREDISEGIREDREGDC*NEGDEEKDQHNDSRRVL 247
           EG  E+ISE + ED EG+  +E D E+D++++   V+
Sbjct: 139 EGLEEEISEDVEEDLEGE--DEEDREEDRNSEDDGVV 173

>SMYD5_XENLA (Q6GPQ4) SET and MYND domain-containing protein 5|
          Length = 421

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
 Frame = -2

Query: 605 LVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYR-----KGIGSKVVDMYKEA 441
           L+ E+ + +   LRR F D  ++ +      P+     +       +GIG+  +  +  A
Sbjct: 207 LLGEKFKGQLDQLRRLFVDALYEERMSRWFTPEGFRSLFALVGTNGQGIGTSSLSQWVHA 266

Query: 440 YDSIEIPKYVDTVTPRYKPKFDALLVEL-KEAEKTS 336
            D++E+P       PR + K DAL+ +L K+ EK +
Sbjct: 267 CDALELP-------PRDREKLDALIDQLYKDIEKVT 295

>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1|
          Length = 574

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -1

Query: 597 RGGPEGVRQPPPHLRGR---QPPAPDQVLPGTTA 505
           R  P   RQPPP    R    PPAP   +PG +A
Sbjct: 367 RSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA 400

>SF3A2_HUMAN (Q15428) Splicing factor 3A subunit 2 (Spliceosome-associated|
           protein 62) (SAP 62) (SF3a66)
          Length = 464

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 600 LRGGPEGVRQPPPHLRGRQPPAP 532
           L  GP GV++PPP L    PP P
Sbjct: 223 LPAGPPGVKRPPPPLMNGLPPRP 245

>FOXM1_MOUSE (O08696) Forkhead box protein M1 (Forkhead homolog 16)|
           (Winged-helix transcription factor Trident)
          Length = 760

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 570 PPPHLRGRQPPAPDQVLPGTTAN 502
           PPPH+ G +P +P+  +P  +AN
Sbjct: 690 PPPHVEGPKPGSPELQIPSLSAN 712

>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 591  GPEGVRQPPPHLRGRQPPAPDQVLPG 514
            G +G +QPPP + G  PPAP Q  PG
Sbjct: 1300 GQQG-QQPPPSVGGGPPPAPQQHGPG 1324

>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated|
           protein 62) (SAP 62) (SF3a66)
          Length = 475

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 600 LRGGPEGVRQPPPHLRGRQPPAP 532
           L  GP GV++PPP L    PP P
Sbjct: 213 LPAGPPGVKRPPPPLMNGLPPRP 235


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,271,847
Number of Sequences: 219361
Number of extensions: 1624560
Number of successful extensions: 6070
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6053
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7196276819
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)