ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33i08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SEM4G_HUMAN (Q9NTN9) Semaphorin-4G precursor 30 4.0
2SEM4G_MOUSE (Q9WUH7) Semaphorin-4G precursor 30 4.0

>SEM4G_HUMAN (Q9NTN9) Semaphorin-4G precursor|
          Length = 838

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 145 RSSRMNGPSFPDLKRVNNFLDAGPCESSSGLWGIL 249
           R  RMNG S+  L++ NN + AGPC  +  L  IL
Sbjct: 787 RLRRMNGNSYVLLRQSNNGVPAGPCSFAEELSRIL 821



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>SEM4G_MOUSE (Q9WUH7) Semaphorin-4G precursor|
          Length = 837

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 145 RSSRMNGPSFPDLKRVNNFLDAGPCESSSGLWGIL 249
           R  RMNG S+  L++ NN + AGPC  +  L  IL
Sbjct: 786 RLRRMNGNSYVLLRQSNNGVPAGPCSFAEELSRIL 820


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,020,283
Number of Sequences: 219361
Number of extensions: 1583634
Number of successful extensions: 3369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3369
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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