ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33i05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550259.1| Oryza sativa (japonica cultivar-group), mRNA 176 6e-41
2dbj|AK120658.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 6e-41
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
4dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
5dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
6dbj|AK120330.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 1e-11
7gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome... 68 4e-08
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
9dbj|AP006665.1| Lotus japonicus genomic DNA, chromosome 2, clone... 54 6e-04
10emb|CR628337.1| Legionella pneumophila str. Lens complete genome 50 0.010
11gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 46 0.15
12emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome... 46 0.15
13emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 46 0.15
14gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 42 2.4
15emb|AL662914.8| Human DNA sequence from clone RP13-419C3 on chro... 42 2.4
16emb|CR628336.1| Legionella pneumophila str. Paris complete genome 42 2.4
17ref|XM_679794.1| PREDICTED: Danio rerio similar to membrane-asso... 42 2.4
18ref|XM_679629.1| PREDICTED: Danio rerio similar to membrane-asso... 42 2.4
19gb|AC017089.3| Homo sapiens BAC clone RP11-500H5 from X, complet... 42 2.4
20emb|AL929201.6| Zebrafish DNA sequence from clone CH211-66G24 in... 42 2.4
21gb|AC169813.2| Rhesus Macaque BAC CH250-16M3 (Children's Hospit... 40 9.3
22ref|XM_416868.1| PREDICTED: Gallus gallus similar to pseudoautos... 40 9.3
23ref|XM_867052.1| PREDICTED: Bos taurus hypothetical protein LOC6... 40 9.3
24ref|XM_453887.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D18645g ... 40 9.3
25gb|AC104675.3| Sus scrofa clone RP44-122H18, complete sequence 40 9.3
26gb|AC117756.8| Mus musculus chromosome 1, clone RP24-419N8, comp... 40 9.3
27gb|U49946.1| Caenorhabditis elegans cosmid C09E10, complete sequ... 40 9.3
28ref|NM_006738.4| Homo sapiens A kinase (PRKA) anchor protein 13 ... 40 9.3
29ref|NM_007200.3| Homo sapiens A kinase (PRKA) anchor protein 13 ... 40 9.3
30ref|NM_144767.3| Homo sapiens A kinase (PRKA) anchor protein 13 ... 40 9.3
31emb|AL355861.19| Human DNA sequence from clone RP11-567J24 on ch... 40 9.3
32gb|BC019662.1| Homo sapiens A kinase (PRKA) anchor protein 13, m... 40 9.3
33emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 9.3
34emb|CR735104.7| Zebrafish DNA sequence from clone DKEYP-72G9 in ... 40 9.3
35emb|BX005100.9| Mouse DNA sequence from clone RP23-76P22 on chro... 40 9.3
36gb|AC093009.5| Homo sapiens 3 BAC RP11-548O23 (Roswell Park Canc... 40 9.3
37gb|U67949.2| Caenorhabditis elegans cosmid F55A4, complete sequence 40 9.3
38dbj|AK091210.1| Homo sapiens cDNA FLJ33891 fis, clone CTONG2007500 40 9.3
39emb|CR596185.1| full-length cDNA clone CS0DI042YG19 of Placenta ... 40 9.3
40gb|AC106721.4| Homo sapiens 3 BAC RP11-49H3 (Roswell Park Cancer... 40 9.3
41ref|NM_075791.3| Caenorhabditis elegans F55A4.10 (F55A4.10) mRNA... 40 9.3
42dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
43gb|AC021739.16| Homo sapiens chromosome 15, clone RP11-158M2, co... 40 9.3
44gb|AY173074.1| Zantedeschia aethiopica glycolate oxidase (gox) m... 40 9.3
45dbj|AP004868.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
46dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
47gb|AC117766.6| Mus musculus chromosome 1, clone RP24-507L6, comp... 40 9.3
48emb|AL133430.1|IRO233360 Homo sapiens mRNA full length insert cD... 40 9.3
49emb|AL133429.1|IRO050374 Homo sapiens mRNA full length insert cD... 40 9.3
50gb|AC006222.1|AC006222 Homo sapiens, clone hRPK.12_A_1, complete... 40 9.3
51emb|AL662809.14| Mouse DNA sequence from clone RP23-441I8 on chr... 40 9.3
52emb|AL732543.8| Mouse DNA sequence from clone RP23-13D22 on chro... 40 9.3 
>ref|XM_550259.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1929

 Score =  176 bits (89), Expect = 6e-41
 Identities = 257/313 (82%)
 Strand = Plus / Minus

                                                                        
Query: 371  tagaagagctgaaagaagagggtcgttgaaccatcgctgaatgaccggatgtcccctggc 430
            ||||| ||||| || |||||| ||||||| ||||| | ||| ||||||| |||  |||| 
Sbjct: 1575 tagaatagctggaaaaagaggctcgttgagccatcaccgaacgaccggaggtctgctggt 1516

                                                                        
Query: 431  ttcaccagcgccctgcataacgggcatgtccgctcccgctccaaccattcggaggcacag 490
            ||||||| ||| ||||||| ||||||||||||||||| ||| |||||||| ||| |||| 
Sbjct: 1515 ttcaccaacgctctgcatagcgggcatgtccgctccctctcgaaccattcagagacacaa 1456

                                                                        
Query: 491  tcttcgcagaagatatgtttacactgtaggaggatgggagtatgcatcttttcttggcat 550
            || ||||| |||||||| |||||  | |  || |||||||||||||||||||| ||||||
Sbjct: 1455 tcctcgcaaaagatatgcttacagcgcaaaagaatgggagtatgcatcttttcctggcat 1396

                                                                        
Query: 551  atagcacacagatctccagcagcaagaacctgctcagttgttgcatgtgaaccataatgc 610
            |||||||||| |||||||| ||||  |||||| ||| | ||||| | |||||| ||||| 
Sbjct: 1395 atagcacacatatctccagtagcactaacctgttcactagttgcgtatgaaccgtaatgg 1336

                                                                        
Query: 611  aagtccttatgagacagcgcattcactgaagccaaaagtgatcgaaccttttccaccatt 670
            ||||| |||||||| | |||  ||| ||  | ||||| |||| ||||||||||||| | |
Sbjct: 1335 aagtctttatgagataacgctctcaatgctgtcaaaaatgattgaaccttttccacaact 1276

                         
Query: 671  gatgccaccttga 683
            |||| || |||||
Sbjct: 1275 gatgtcaacttga 1263
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>dbj|AK120658.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158E21, full
            insert sequence
          Length = 1929

 Score =  176 bits (89), Expect = 6e-41
 Identities = 257/313 (82%)
 Strand = Plus / Minus

                                                                        
Query: 371  tagaagagctgaaagaagagggtcgttgaaccatcgctgaatgaccggatgtcccctggc 430
            ||||| ||||| || |||||| ||||||| ||||| | ||| ||||||| |||  |||| 
Sbjct: 1575 tagaatagctggaaaaagaggctcgttgagccatcaccgaacgaccggaggtctgctggt 1516

                                                                        
Query: 431  ttcaccagcgccctgcataacgggcatgtccgctcccgctccaaccattcggaggcacag 490
            ||||||| ||| ||||||| ||||||||||||||||| ||| |||||||| ||| |||| 
Sbjct: 1515 ttcaccaacgctctgcatagcgggcatgtccgctccctctcgaaccattcagagacacaa 1456

                                                                        
Query: 491  tcttcgcagaagatatgtttacactgtaggaggatgggagtatgcatcttttcttggcat 550
            || ||||| |||||||| |||||  | |  || |||||||||||||||||||| ||||||
Sbjct: 1455 tcctcgcaaaagatatgcttacagcgcaaaagaatgggagtatgcatcttttcctggcat 1396

                                                                        
Query: 551  atagcacacagatctccagcagcaagaacctgctcagttgttgcatgtgaaccataatgc 610
            |||||||||| |||||||| ||||  |||||| ||| | ||||| | |||||| ||||| 
Sbjct: 1395 atagcacacatatctccagtagcactaacctgttcactagttgcgtatgaaccgtaatgg 1336

                                                                        
Query: 611  aagtccttatgagacagcgcattcactgaagccaaaagtgatcgaaccttttccaccatt 670
            ||||| |||||||| | |||  ||| ||  | ||||| |||| ||||||||||||| | |
Sbjct: 1335 aagtctttatgagataacgctctcaatgctgtcaaaaatgattgaaccttttccacaact 1276

                         
Query: 671  gatgccaccttga 683
            |||| || |||||
Sbjct: 1275 gatgtcaacttga 1263
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                           
Query: 474     accattcggaggcacagtcttcgcagaagatatgtttacactgtaggaggatgggagtat 533
               ||||||| ||| |||| || ||||| |||||||| |||||  | |  || ||||||||||
Sbjct: 3503192 accattcagagacacaatcctcgcaaaagatatgcttacagcgcaaaagaatgggagtat 3503133

                                                        
Query: 534     gcatcttttcttggcatatagcacacagatctccagcagca 574
               |||||||||| |||||||||||||||| |||||||| ||||
Sbjct: 3503132 gcatcttttcctggcatatagcacacatatctccagtagca 3503092



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 89/106 (83%)
 Strand = Plus / Minus

                                                                           
Query: 371     tagaagagctgaaagaagagggtcgttgaaccatcgctgaatgaccggatgtcccctggc 430
               ||||| ||||| || |||||| ||||||| ||||| | ||| ||||||| |||  |||| 
Sbjct: 3503421 tagaatagctggaaaaagaggctcgttgagccatcaccgaacgaccggaggtctgctggt 3503362

                                                             
Query: 431     ttcaccagcgccctgcataacgggcatgtccgctcccgctccaacc 476
               ||||||| ||| ||||||| ||||||||||||||||| ||| ||||
Sbjct: 3503361 ttcaccaacgctctgcatagcgggcatgtccgctccctctcgaacc 3503316
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>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1276_B06
          Length = 175174

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                         
Query: 474   accattcggaggcacagtcttcgcagaagatatgtttacactgtaggaggatgggagtat 533
             ||||||| ||| |||| || ||||| |||||||| |||||  | |  || ||||||||||
Sbjct: 71260 accattcagagacacaatcctcgcaaaagatatgcttacagcgcaaaagaatgggagtat 71201

                                                      
Query: 534   gcatcttttcttggcatatagcacacagatctccagcagca 574
             |||||||||| |||||||||||||||| |||||||| ||||
Sbjct: 71200 gcatcttttcctggcatatagcacacatatctccagtagca 71160



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 89/106 (83%)
 Strand = Plus / Minus

                                                                         
Query: 371   tagaagagctgaaagaagagggtcgttgaaccatcgctgaatgaccggatgtcccctggc 430
             ||||| ||||| || |||||| ||||||| ||||| | ||| ||||||| |||  |||| 
Sbjct: 71489 tagaatagctggaaaaagaggctcgttgagccatcaccgaacgaccggaggtctgctggt 71430

                                                           
Query: 431   ttcaccagcgccctgcataacgggcatgtccgctcccgctccaacc 476
             ||||||| ||| ||||||| ||||||||||||||||| ||| ||||
Sbjct: 71429 ttcaccaacgctctgcatagcgggcatgtccgctccctctcgaacc 71384
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>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0028E10
          Length = 140791

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                         
Query: 474   accattcggaggcacagtcttcgcagaagatatgtttacactgtaggaggatgggagtat 533
             ||||||| ||| |||| || ||||| |||||||| |||||  | |  || ||||||||||
Sbjct: 89952 accattcagagacacaatcctcgcaaaagatatgcttacagcgcaaaagaatgggagtat 89893

                                                      
Query: 534   gcatcttttcttggcatatagcacacagatctccagcagca 574
             |||||||||| |||||||||||||||| |||||||| ||||
Sbjct: 89892 gcatcttttcctggcatatagcacacatatctccagtagca 89852



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 89/106 (83%)
 Strand = Plus / Minus

                                                                         
Query: 371   tagaagagctgaaagaagagggtcgttgaaccatcgctgaatgaccggatgtcccctggc 430
             ||||| ||||| || |||||| ||||||| ||||| | ||| ||||||| |||  |||| 
Sbjct: 90181 tagaatagctggaaaaagaggctcgttgagccatcaccgaacgaccggaggtctgctggt 90122

                                                           
Query: 431   ttcaccagcgccctgcataacgggcatgtccgctcccgctccaacc 476
             ||||||| ||| ||||||| ||||||||||||||||| ||| ||||
Sbjct: 90121 ttcaccaacgctctgcatagcgggcatgtccgctccctctcgaacc 90076
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>dbj|AK120330.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058L21, full
            insert sequence
          Length = 1536

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 103/124 (83%)
 Strand = Plus / Minus

                                                                        
Query: 452  gggcatgtccgctcccgctccaaccattcggaggcacagtcttcgcagaagatatgttta 511
            ||||| ||||| || ||||| |||||||| ||| ||||||| || ||||| |||||||||
Sbjct: 1377 gggcaagtccgttctcgctcaaaccattcagagacacagtcctcacagaaaatatgttta 1318

                                                                        
Query: 512  cactgtaggaggatgggagtatgcatcttttcttggcatatagcacacagatctccagca 571
            ||  | |||||||  |||  |||||||||||| ||||| || ||||||| ||| ||||||
Sbjct: 1317 cagcggaggaggacaggaacatgcatcttttcctggcagatggcacacatatcaccagca 1258

                
Query: 572  gcaa 575
            ||||
Sbjct: 1257 gcaa 1254
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>gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1333_C12,
             complete sequence
          Length = 102029

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 85/102 (83%)
 Strand = Plus / Plus

                                                                         
Query: 474   accattcggaggcacagtcttcgcagaagatatgtttacactgtaggaggatgggagtat 533
             ||||||| ||| ||||||| || ||||| |||||||||||  | |||||||  |||  ||
Sbjct: 86253 accattcagagacacagtcctcacagaaaatatgtttacagcggaggaggacaggaacat 86312

                                                       
Query: 534   gcatcttttcttggcatatagcacacagatctccagcagcaa 575
             |||||||||| ||||| || ||||||| ||| ||||||||||
Sbjct: 86313 gcatcttttcctggcagatggcacacatatcaccagcagcaa 86354
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 85/102 (83%)
 Strand = Plus / Plus

                                                                            
Query: 474      accattcggaggcacagtcttcgcagaagatatgtttacactgtaggaggatgggagtat 533
                ||||||| ||| ||||||| || ||||| |||||||||||  | |||||||  |||  ||
Sbjct: 14455545 accattcagagacacagtcctcacagaaaatatgtttacagcggaggaggacaggaacat 14455604

                                                          
Query: 534      gcatcttttcttggcatatagcacacagatctccagcagcaa 575
                |||||||||| ||||| || ||||||| ||| ||||||||||
Sbjct: 14455605 gcatcttttcctggcagatggcacacatatcaccagcagcaa 14455646
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>dbj|AP006665.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT31L13, TM0360,
             complete sequence
          Length = 91632

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 532   atgcatcttttcttggcatatagcacacagatctccagcagca 574
             |||||||||||| |||||||||||||| || || |||||||||
Sbjct: 56107 atgcatcttttcctggcatatagcacataggtcgccagcagca 56149
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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 115    cagccacatgctaatggaaattcacctct 143
              |||||| ||||||||||||||||||||||
Sbjct: 830348 cagccaaatgctaatggaaattcacctct 830376
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 94     gcagatatggcagcacccaccca 116
              |||||||||||||||||||||||
Sbjct: 327360 gcagatatggcagcacccaccca 327382
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>emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome; segment 1/13
          Length = 341957

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 94     gcagatatggcagcacccaccca 116
              |||||||||||||||||||||||
Sbjct: 327246 gcagatatggcagcacccaccca 327268
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>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 1/14
          Length = 343050

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 94     gcagatatggcagcacccaccca 116
              |||||||||||||||||||||||
Sbjct: 325571 gcagatatggcagcacccaccca 325593
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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
              genome
          Length = 3397754

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 115    cagccacatgctaatggaaattcacctct 143
              |||||| |||||||||||||| |||||||
Sbjct: 757275 cagccaaatgctaatggaaatccacctct 757303
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>emb|AL662914.8| Human DNA sequence from clone RP13-419C3 on chromosome X, complete
             sequence
          Length = 110403

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 262   ggcaaaggacctggactggaa 282
             |||||||||||||||||||||
Sbjct: 30850 ggcaaaggacctggactggaa 30870
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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 115    cagccacatgctaatggaaattcacctct 143
              |||||| |||||||||||||| |||||||
Sbjct: 840462 cagccaaatgctaatggaaatccacctct 840490
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>ref|XM_679794.1| PREDICTED: Danio rerio similar to membrane-associated guanylate
            kinase-related (MAGI-3) (LOC556872), mRNA
          Length = 2730

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 122  atgctaatggaaattcacctc 142
            |||||||||||||||||||||
Sbjct: 1517 atgctaatggaaattcacctc 1537
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>ref|XM_679629.1| PREDICTED: Danio rerio similar to membrane-associated guanylate
            kinase-related (MAGI-3) (LOC556751), mRNA
          Length = 3018

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 122  atgctaatggaaattcacctc 142
            |||||||||||||||||||||
Sbjct: 1805 atgctaatggaaattcacctc 1825
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>gb|AC017089.3| Homo sapiens BAC clone RP11-500H5 from X, complete sequence
          Length = 178320

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 262    ggcaaaggacctggactggaa 282
              |||||||||||||||||||||
Sbjct: 166869 ggcaaaggacctggactggaa 166849
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>emb|AL929201.6| Zebrafish DNA sequence from clone CH211-66G24 in linkage group 8,
              complete sequence
          Length = 186121

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 122    atgctaatggaaattcacctc 142
              |||||||||||||||||||||
Sbjct: 101454 atgctaatggaaattcacctc 101434
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>gb|AC169813.2| Rhesus Macaque  BAC CH250-16M3 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 168861

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 367    ttgttagaagagctgaaaga 386
              ||||||||||||||||||||
Sbjct: 100604 ttgttagaagagctgaaaga 100585
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>ref|XM_416868.1| PREDICTED: Gallus gallus similar to pseudoautosomal GTP-binding
            protein-like protein (LOC418672), mRNA
          Length = 1572

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 370  ttagaagagctgaaagaaga 389
            ||||||||||||||||||||
Sbjct: 1108 ttagaagagctgaaagaaga 1127
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>ref|XM_867052.1| PREDICTED: Bos taurus hypothetical protein LOC615286 (LOC615286),
           mRNA
          Length = 300

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 567 cagcagcaagaacctgctca 586
           ||||||||||||||||||||
Sbjct: 21  cagcagcaagaacctgctca 2
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>ref|XM_453887.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D18645g predicted mRNA
          Length = 2589

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 655  aaccttttccaccattgatg 674
            ||||||||||||||||||||
Sbjct: 2237 aaccttttccaccattgatg 2256
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>gb|AC104675.3| Sus scrofa clone RP44-122H18, complete sequence
          Length = 176345

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   ggttagcacttcttgtttct 367
             ||||||||||||||||||||
Sbjct: 98242 ggttagcacttcttgtttct 98223
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>gb|AC117756.8| Mus musculus chromosome 1, clone RP24-419N8, complete sequence
          Length = 174783

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 365   tcttgttagaagagctgaaagaag 388
             |||||||||||||||||| |||||
Sbjct: 27132 tcttgttagaagagctgagagaag 27155
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>gb|U49946.1| Caenorhabditis elegans cosmid C09E10, complete sequence
          Length = 25100

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 559   cagatctccagcagcaagaa 578
             ||||||||||||||||||||
Sbjct: 24836 cagatctccagcagcaagaa 24855
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>ref|NM_006738.4| Homo sapiens A kinase (PRKA) anchor protein 13 (AKAP13), transcript
             variant 1, mRNA
          Length = 13302

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 554   gcacacagatctccagcagc 573
             ||||||||||||||||||||
Sbjct: 12360 gcacacagatctccagcagc 12341
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>ref|NM_007200.3| Homo sapiens A kinase (PRKA) anchor protein 13 (AKAP13), transcript
             variant 2, mRNA
          Length = 13290

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 554   gcacacagatctccagcagc 573
             ||||||||||||||||||||
Sbjct: 12348 gcacacagatctccagcagc 12329
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>ref|NM_144767.3| Homo sapiens A kinase (PRKA) anchor protein 13 (AKAP13), transcript
            variant 3, mRNA
          Length = 8081

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 554  gcacacagatctccagcagc 573
            ||||||||||||||||||||
Sbjct: 7139 gcacacagatctccagcagc 7120
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>emb|AL355861.19| Human DNA sequence from clone RP11-567J24 on chromosome 10 Contains the
              5' end of a novel gene, the PRDX3 gene for peroxiredoxin 3
              (AOP1, MER5, AOP-1, SP-22), the 5' end of the GPRK5 gene
              for G protein-coupled receptor kinase 5 (GRK5), a novel
              gene and four CpG islands, complete sequence
          Length = 168528

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    atggcagcacccacccagcc 119
              ||||||||||||||||||||
Sbjct: 134715 atggcagcacccacccagcc 134696
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>gb|BC019662.1| Homo sapiens A kinase (PRKA) anchor protein 13, mRNA (cDNA clone
           IMAGE:4517740), partial cds
          Length = 1246

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 554 gcacacagatctccagcagc 573
           ||||||||||||||||||||
Sbjct: 288 gcacacagatctccagcagc 269
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>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 1715506

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 655     aaccttttccaccattgatg 674
               ||||||||||||||||||||
Sbjct: 1571458 aaccttttccaccattgatg 1571439
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>emb|CR735104.7| Zebrafish DNA sequence from clone DKEYP-72G9 in linkage group 21,
              complete sequence
          Length = 190684

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 290    cagcacacggcaggctgatg 309
              ||||||||||||||||||||
Sbjct: 160260 cagcacacggcaggctgatg 160279
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>emb|BX005100.9| Mouse DNA sequence from clone RP23-76P22 on chromosome 11 Contains part
              of the gene for a novel protein (C230094A16Rik), the gene
              for a novel protein (4931440F15Rik) similar to Mus musculus
              feminization 1 homolog a (C. elegans) (Fem1a), a ribosomal
              protein L23 (Rpl23) pseudogene, a preferentially expressed
              antigen in melanoma like 5 (Pramel5) pseudogene and a CpG
              island, complete sequence
          Length = 193116

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    atagattcagttatctcctc 163
              ||||||||||||||||||||
Sbjct: 109261 atagattcagttatctcctc 109242
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>gb|AC093009.5| Homo sapiens 3 BAC RP11-548O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 89214

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   agagctgaaagaagagggtc 394
             ||||||||||||||||||||
Sbjct: 54116 agagctgaaagaagagggtc 54097
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>gb|U67949.2| Caenorhabditis elegans cosmid F55A4, complete sequence
          Length = 42099

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 559  cagatctccagcagcaagaa 578
            ||||||||||||||||||||
Sbjct: 3736 cagatctccagcagcaagaa 3755
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>dbj|AK091210.1| Homo sapiens cDNA FLJ33891 fis, clone CTONG2007500
          Length = 3152

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 554  gcacacagatctccagcagc 573
            ||||||||||||||||||||
Sbjct: 2215 gcacacagatctccagcagc 2196
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>emb|CR596185.1| full-length cDNA clone CS0DI042YG19 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1617

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 554 gcacacagatctccagcagc 573
           ||||||||||||||||||||
Sbjct: 673 gcacacagatctccagcagc 654
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>gb|AC106721.4| Homo sapiens 3 BAC RP11-49H3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 106246

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   agagctgaaagaagagggtc 394
             ||||||||||||||||||||
Sbjct: 23436 agagctgaaagaagagggtc 23455
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>ref|NM_075791.3| Caenorhabditis elegans F55A4.10 (F55A4.10) mRNA, complete cds
          Length = 2003

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 559  cagatctccagcagcaagaa 578
            ||||||||||||||||||||
Sbjct: 1155 cagatctccagcagcaagaa 1174
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 582      gctcagttgttgcatgtgaa 601
                ||||||||||||||||||||
Sbjct: 26192559 gctcagttgttgcatgtgaa 26192540
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>gb|AC021739.16| Homo sapiens chromosome 15, clone RP11-158M2, complete sequence
          Length = 112393

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 554   gcacacagatctccagcagc 573
             ||||||||||||||||||||
Sbjct: 56943 gcacacagatctccagcagc 56924
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>gb|AY173074.1| Zantedeschia aethiopica glycolate oxidase (gox) mRNA, complete cds
          Length = 1486

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 366 cttgttagaagagctgaaag 385
           ||||||||||||||||||||
Sbjct: 517 cttgttagaagagctgaaag 536
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>dbj|AP004868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0048B08
          Length = 146874

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 582   gctcagttgttgcatgtgaa 601
             ||||||||||||||||||||
Sbjct: 89386 gctcagttgttgcatgtgaa 89367
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>dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0012J10
          Length = 132375

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 582   gctcagttgttgcatgtgaa 601
             ||||||||||||||||||||
Sbjct: 15400 gctcagttgttgcatgtgaa 15381
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>gb|AC117766.6| Mus musculus chromosome 1, clone RP24-507L6, complete sequence
          Length = 190180

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 365   tcttgttagaagagctgaaagaag 388
             |||||||||||||||||| |||||
Sbjct: 10091 tcttgttagaagagctgagagaag 10068
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>emb|AL133430.1|IRO233360 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 233360
          Length = 2100

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 554  gcacacagatctccagcagc 573
            ||||||||||||||||||||
Sbjct: 1144 gcacacagatctccagcagc 1125
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>emb|AL133429.1|IRO050374 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 50374
          Length = 1970

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 554 gcacacagatctccagcagc 573
           ||||||||||||||||||||
Sbjct: 984 gcacacagatctccagcagc 965
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>gb|AC006222.1|AC006222 Homo sapiens, clone hRPK.12_A_1, complete sequence
          Length = 165643

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 603   cataatgcaagtccttatgagaca 626
             ||||| ||||||||||||||||||
Sbjct: 52153 cataaagcaagtccttatgagaca 52176
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>emb|AL662809.14| Mouse DNA sequence from clone RP23-441I8 on chromosome 11, complete
             sequence
          Length = 103129

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   cacctctatagattcagtta 156
             ||||||||||||||||||||
Sbjct: 14606 cacctctatagattcagtta 14625
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>emb|AL732543.8| Mouse DNA sequence from clone RP23-13D22 on chromosome 4, complete
             sequence
          Length = 195272

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   gaagagctgaaagaagaggg 392
             ||||||||||||||||||||
Sbjct: 39914 gaagagctgaaagaagaggg 39895


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,245,766
Number of Sequences: 3902068
Number of extensions: 5245766
Number of successful extensions: 100310
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100058
Number of HSP's gapped (non-prelim): 248
length of query: 683
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 660
effective length of database: 17,143,297,704
effective search space: 11314576484640
effective search space used: 11314576484640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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