ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags33i03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YMH5_CAEEL (P34472) Hypothetical C-type lectin protein F58A4.5 p... 30 5.5
2FUMH_SCHPO (O94552) Fumarate hydratase, mitochondrial precursor ... 30 9.4

>YMH5_CAEEL (P34472) Hypothetical C-type lectin protein F58A4.5 precursor|
          Length = 786

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 306 QPICILV*SNNQQIYECRSQTQNRMASHRLRICFMI 413
           QPI +    N  ++YEC+  T N +AS  L  CF +
Sbjct: 14  QPILVFA-QNRTELYECKIGTVNPLASTSLNACFKL 48



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>FUMH_SCHPO (O94552) Fumarate hydratase, mitochondrial precursor (EC 4.2.1.2)|
           (Fumarase)
          Length = 482

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 107 PHHPNTSLHPTKRITNTYKCISYMDITIQITQHTLPIFQQLARFAK 244
           P HPN  ++ ++   +T+  + ++   +QI  H LP  + L R  K
Sbjct: 144 PVHPNDHVNMSQSSNDTFPTVMHIASVLQIHTHLLPAMKHLHRALK 189


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,857,891
Number of Sequences: 219361
Number of extensions: 1958549
Number of successful extensions: 4299
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4298
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7139613222
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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