Clone Information

BLAST Search Result

Clone Name	rbags33h16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BT017696.1\| Zea mays clone EL01N0445C05.c mRNA sequence	266	8e-68
2	gb\|AY108818.1\| Zea mays PCO094501 mRNA sequence	242	1e-60
3	dbj\|AK119602.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	222	1e-54
4	dbj\|AK102573.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	222	1e-54
5	ref\|XM_470861.1\| Oryza sativa (japonica cultivar-group), predic...	178	1e-41
6	gb\|AC079853.2\| Oryza sativa (japonica cultivar-group) chromosome...	105	2e-19
7	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	105	2e-19
8	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	105	2e-19
9	ref\|NM_119861.3\| Arabidopsis thaliana unknown protein AT4G36980 ...	44	0.56
10	gb\|AC167725.9\| Mus musculus BAC RP24-421G17 (Roswell Park Cance...	44	0.56
11	gb\|AC104365.4\| Homo sapiens chromosome 18, clone RP11-108P20, co...	44	0.56
12	gb\|AC138744.4\| Homo sapiens chromosome 17, clone RP11-859E19, co...	44	0.56
13	gb\|AC158669.3\| Mus musculus 6 BAC RP23-66K6 (Roswell Park Cancer...	44	0.56
14	gb\|CP000233.1\| Lactobacillus salivarius subsp. salivarius UCC118...	42	2.2
15	emb\|AL596171.1\| Listeria innocua Clip11262 complete genome, segm...	42	2.2
16	gb\|AC068640.29\| Homo sapiens 12 BAC RP11-105I4 (Roswell Park Can...	42	2.2
17	gb\|AC009387.27\| Homo sapiens 12 BAC RP11-110L15 (Roswell Park Ca...	42	2.2
18	ref\|NM_120197.3\| Arabidopsis thaliana copper ion binding AT5G011...	40	8.8
19	gb\|AC156952.22\| Mus musculus 10 BAC RP24-385D2 (Roswell Park Can...	40	8.8
20	gb\|CP000096.1\| Pelodictyon luteolum DSM 273, complete genome	40	8.8
21	gb\|BT021566.1\| Bos taurus LIM domain only 6 (LMO6), mRNA, comple...	40	8.8
22	gb\|AC145785.2\| Xenopus tropicalis clone CH216-102H4, complete se...	40	8.8
23	gb\|AY551075.1\| Drosophila buzzatii 2j inversion proximal breakpo...	40	8.8
24	gb\|AY551073.1\| Drosophila buzzatii 2j inversion proximal breakpo...	40	8.8
25	gb\|BT014855.1\| Arabidopsis thaliana At5g01190 gene, complete cds	40	8.8
26	gb\|AC161280.2\| Pan troglodytes BAC clone CH251-392H4 from chromo...	40	8.8
27	gb\|AC161123.3\| Pan troglodytes BAC clone CH251-618D5 from chromo...	40	8.8
28	gb\|AC147826.2\| Xenopus tropicalis clone CH216-138M21, complete s...	40	8.8
29	gb\|AC136699.23\| Mus musculus chromosome 9, clone RP23-18E24, com...	40	8.8
30	emb\|AJ012166.1\|CFA012166 Canis familiaris TCTA gene, AMT gene, N...	40	8.8
31	gb\|AC130206.2\| Mus musculus BAC clone RP24-448F6 from chromosome...	40	8.8
32	gb\|AC151527.13\| Medicago truncatula clone mth2-135i19, complete ...	40	8.8
33	emb\|AL163544.24\| Human DNA sequence from clone RP11-322A14 on ch...	40	8.8
34	emb\|AL035682.16\|HS1009H6 Human DNA sequence from clone RP5-1009H...	40	8.8
35	emb\|Z99707.1\|ATAP21 Arabidopsis thaliana DNA chromosome 4, ESSA ...	40	8.8
36	emb\|AL161590.2\|ATCHRIV86 Arabidopsis thaliana DNA chromosome 4, ...	40	8.8
37	emb\|AL137189.2\|ATF7J8 Arabidopsis thaliana DNA chromosome 5, BAC...	40	8.8
38	ref\|NM_143409.1\| Drosophila melanogaster CG11873-RA (CG11873), mRNA	40	8.8
39	gb\|AC073938.11\|AC073938 Mus musculus 18 BAC RP23-292H1 (Roswell ...	40	8.8
40	gb\|AC007947.5\|AC007947 Drosophila melanogaster, chromosome 3R, r...	40	8.8
41	gb\|AC005075.2\|AC005075 Homo sapiens BAC clone CTA-219E16 from 7,...	40	8.8
42	gb\|AC020967.2\|AC020967 Mus musculus chromosome 18 clone RP23-161...	40	8.8
43	ref\|NM_001014886.1\| Bos taurus LIM-only protein 6 (LMO6), mRNA	40	8.8
44	gb\|AE003768.2\| Drosophila melanogaster chromosome 3R, section 10...	40	8.8
45	gb\|AC093445.4\| Mus musculus strain C57BL/6J chromosome 1 clone r...	40	8.8
46	gb\|U97104.1\|BTU97104 Bactrocera tryoni membrane transporter (whi...	40	8.8
47	gb\|AC153893.3\| Mus musculus 10 BAC RP23-124O20 (Roswell Park Can...	40	8.8
48	emb\|AL929200.8\| Zebrafish DNA sequence from clone CH211-190B21, ...	40	8.8
49	gb\|AC102045.14\| Mus musculus chromosome 1, clone RP23-335P21, co...	40	8.8
50	emb\|AL954698.9\| Zebrafish DNA sequence from clone CH211-233B16 i...	40	8.8
51	emb\|AL928872.7\| Zebrafish DNA sequence from clone DKEYP-59A2, co...	40	8.8
52	emb\|AL591770.3\|CNS07EGN Human chromosome 14 DNA sequence BAC R-1...	40	8.8
53	emb\|AL162891.4\|CNS01RI6 Human chromosome 14 DNA sequence BAC R-3...	40	8.8
54	dbj\|D16579.1\| Dictyostelium discoideum mitochondrial DNA for NAD...	40	8.8
55	dbj\|AB000109.1\| Dictyostelium discoideum mitochondrial DNA, comp...	40	8.8

>gb|BT017696.1| Zea mays clone EL01N0445C05.c mRNA sequence
          Length = 906

 Score =  266 bits (134), Expect = 8e-68
 Identities = 265/308 (86%), Gaps = 3/308 (0%)
 Strand = Plus / Minus

                                                                       
Query: 292 cttcttgggctccggctcctactacggcttctgctgtaatgccgctttcttggtggagaa 351
           ||||||||||| | ||||||||||||||||||||| ||  ||| | |||||||||| |||
Sbjct: 662 cttcttgggcttctgctcctactacggcttctgctatatcgccaccttcttggtggggaa 603

                                                                       
Query: 352 tggctaaggcttctactcctgctacggagcctgtatcgacctacttctgcaagtttttca 411
            ||||||| |||||||| | ||||||  || |||||||||| ||||| ||||||||||| 
Sbjct: 602 cggctaagacttctactgcggctacgacgcttgtatcgaccaacttcagcaagtttttcc 543

                                                                       
Query: 412 tgcctttgccgttcctgttctcgtttctttgcggtctcagctgcagtgtcttttcgaatt 471
           |||||||| |||||||||||||||||||| ||  ||||||| || ||||| |||  ||||
Sbjct: 542 tgcctttgtcgttcctgttctcgtttcttggcaatctcagcagccgtgtcctttttaatt 483

                                                                       
Query: 472 tgtttgttaagctgtttgctcattatccttttaaggcgttcctgtggtgtttctttcttt 531
           || |||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||
Sbjct: 482 tgcttgttaagctgtttgctcattatcctcttaagtctttcttgtggtgtttctttcttt 423

                                                                       
Query: 532 tcggcctggggagttttaccaagtcctccagaagcaccct---ttagtttcgctagtgct 588
           || | ||||||||||||||||  ||| ||||||||| |||   ||||||| |||| ||||
Sbjct: 422 tcagtctggggagttttaccagttcccccagaagcaaccttgcttagtttagctaatgct 363

                   
Query: 589 gatgatgt 596
           ||||||||
Sbjct: 362 gatgatgt 355

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>gb|AY108818.1| Zea mays PCO094501 mRNA sequence
          Length = 461

 Score =  242 bits (122), Expect = 1e-60
 Identities = 223/257 (86%)
 Strand = Plus / Minus

                                                                       
Query: 292 cttcttgggctccggctcctactacggcttctgctgtaatgccgctttcttggtggagaa 351
           ||||||||||| | ||||||||||||||||||||| ||  ||||| |||||||||| |||
Sbjct: 257 cttcttgggcttctgctcctactacggcttctgctatatcgccgccttcttggtggggaa 198

                                                                       
Query: 352 tggctaaggcttctactcctgctacggagcctgtatcgacctacttctgcaagtttttca 411
            ||||||| |||||||| | ||||||  || |||||||||| ||||| ||||||||||| 
Sbjct: 197 cggctaagacttctactgcggctacgacgcttgtatcgaccaacttcagcaagtttttcc 138

                                                                       
Query: 412 tgcctttgccgttcctgttctcgtttctttgcggtctcagctgcagtgtcttttcgaatt 471
           |||||||| |||||||||||||||||||| ||  ||||||| || ||||| |||  ||||
Sbjct: 137 tgcctttgtcgttcctgttctcgtttcttggcaatctcagcagccgtgtcctttttaatt 78

                                                                       
Query: 472 tgtttgttaagctgtttgctcattatccttttaaggcgttcctgtggtgtttctttcttt 531
           || |||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||| 
Sbjct: 77  tgcttgttaagctgtttgctcattatcctcttaagtctttcttgtggtgtttctttcttn 18

                            
Query: 532 tcggcctggggagtttt 548
           || | ||||||||||||
Sbjct: 17  tcagtctggggagtttt 1

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>dbj|AK119602.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-E07, full
            insert sequence
          Length = 1881

 Score =  222 bits (112), Expect = 1e-54
 Identities = 198/227 (87%), Gaps = 6/227 (2%)
 Strand = Plus / Minus

                                                                        
Query: 307  ctcctactacggcttctgctgtaatgccgctttcttggtggagaatggctaaggcttcta 366
            |||||||||||||||||||| ||||| ||| |||||||||||||  ||||||||||    
Sbjct: 1603 ctcctactacggcttctgctataatgtcgccttcttggtggagatcggctaaggct---- 1548

                                                                        
Query: 367  ctcctgctacggagcctgtatcgacctacttctgcaagtttttcatgcctttgccgttcc 426
              |||||| ||   |||||| |||||||| || ||||||||||| |||||||| ||||||
Sbjct: 1547 --cctgcttcgacccctgtaccgacctacctccgcaagtttttcctgcctttggcgttcc 1490

                                                                        
Query: 427  tgttctcgtttctttgcggtctcagctgcagtgtcttttcgaatttgtttgttaagctgt 486
            |||||||||||||||||  ||||||| |||||||| ||||||||||| |||||||| |||
Sbjct: 1489 tgttctcgtttctttgctatctcagcagcagtgtcctttcgaatttgcttgttaagttgt 1430

                                                           
Query: 487  ttgctcattatccttttaaggcgttcctgtggtgtttctttcttttc 533
            ||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 1429 ttgctcattattcttttaagtcgttcttgtggtgtttctttcttttc 1383



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 142  ttcagtgccttgatctgcttctgtacct 169
            ||||||||||||| ||||||||||||||
Sbjct: 1695 ttcagtgccttgacctgcttctgtacct 1668

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>dbj|AK102573.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097M22, full
            insert sequence
          Length = 1973

 Score =  222 bits (112), Expect = 1e-54
 Identities = 198/227 (87%), Gaps = 6/227 (2%)
 Strand = Plus / Minus

                                                                        
Query: 307  ctcctactacggcttctgctgtaatgccgctttcttggtggagaatggctaaggcttcta 366
            |||||||||||||||||||| ||||| ||| |||||||||||||  ||||||||||    
Sbjct: 1604 ctcctactacggcttctgctataatgtcgccttcttggtggagatcggctaaggct---- 1549

                                                                        
Query: 367  ctcctgctacggagcctgtatcgacctacttctgcaagtttttcatgcctttgccgttcc 426
              |||||| ||   |||||| |||||||| || ||||||||||| |||||||| ||||||
Sbjct: 1548 --cctgcttcgacccctgtaccgacctacctccgcaagtttttcctgcctttggcgttcc 1491

                                                                        
Query: 427  tgttctcgtttctttgcggtctcagctgcagtgtcttttcgaatttgtttgttaagctgt 486
            |||||||||||||||||  ||||||| |||||||| ||||||||||| |||||||| |||
Sbjct: 1490 tgttctcgtttctttgctatctcagcagcagtgtcctttcgaatttgcttgttaagttgt 1431

                                                           
Query: 487  ttgctcattatccttttaaggcgttcctgtggtgtttctttcttttc 533
            ||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 1430 ttgctcattattcttttaagtcgttcttgtggtgtttctttcttttc 1384



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 142  ttcagtgccttgatctgcttctgtacct 169
            ||||||||||||| ||||||||||||||
Sbjct: 1696 ttcagtgccttgacctgcttctgtacct 1669

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>ref|XM_470861.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1659

 Score =  178 bits (90), Expect = 1e-41
 Identities = 123/134 (91%)
 Strand = Plus / Minus

                                                                        
Query: 400  gcaagtttttcatgcctttgccgttcctgttctcgtttctttgcggtctcagctgcagtg 459
            ||||||||||| |||||||| |||||||||||||||||||||||  ||||||| ||||||
Sbjct: 1496 gcaagtttttcctgcctttggcgttcctgttctcgtttctttgctatctcagcagcagtg 1437

                                                                        
Query: 460  tcttttcgaatttgtttgttaagctgtttgctcattatccttttaaggcgttcctgtggt 519
            || ||||||||||| |||||||| |||||||||||||| |||||||| ||||| ||||||
Sbjct: 1436 tcctttcgaatttgcttgttaagttgtttgctcattattcttttaagtcgttcttgtggt 1377

                          
Query: 520  gtttctttcttttc 533
            ||||||||||||||
Sbjct: 1376 gtttctttcttttc 1363



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 142  ttcagtgccttgatctgcttctgtacct 169
            ||||||||||||| ||||||||||||||
Sbjct: 1629 ttcagtgccttgacctgcttctgtacct 1602



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 307  ctcctactacggcttctgctgtaatgccgctttct 341
            |||||||||||||||||||| ||||| ||| ||||
Sbjct: 1537 ctcctactacggcttctgctataatgtcgccttct 1503

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>gb|AC079853.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0004M10, complete sequence
          Length = 152423

 Score =  105 bits (53), Expect = 2e-19
 Identities = 80/89 (89%)
 Strand = Plus / Minus

                                                                         
Query: 381   cctgtatcgacctacttctgcaagtttttcatgcctttgccgttcctgttctcgtttctt 440
             |||||| |||||||| || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 92018 cctgtaccgacctacctccgcaagtttttcctgcctttggcgttcctgttctcgtttctt 91959

                                          
Query: 441   tgcggtctcagctgcagtgtcttttcgaa 469
             |||  ||||||| |||||||| |||||||
Sbjct: 91958 tgctatctcagcagcagtgtcctttcgaa 91930



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Minus

                                                                         
Query: 470   tttgtttgttaagctgtttgctcattatccttttaaggcgttcctgtggtgtttctttct 529
             |||| |||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 91819 tttgcttgttaagttgtttgctcattattcttttaagtcgttcttgtggtgtttctttct 91760

                 
Query: 530   tttc 533
             ||||
Sbjct: 91759 tttc 91756



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                             
Query: 142   ttcagtgccttgatctgcttctgtacctgcag 173
             ||||||||||||| ||||||||||||||||||
Sbjct: 92538 ttcagtgccttgacctgcttctgtacctgcag 92507



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 307   ctcctactacggcttctgctgtaatgccgctttct 341
             |||||||||||||||||||| ||||| ||| ||||
Sbjct: 92345 ctcctactacggcttctgctataatgtcgccttct 92311

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  105 bits (53), Expect = 2e-19
 Identities = 80/89 (89%)
 Strand = Plus / Minus

                                                                            
Query: 381      cctgtatcgacctacttctgcaagtttttcatgcctttgccgttcctgttctcgtttctt 440
                |||||| |||||||| || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 15830218 cctgtaccgacctacctccgcaagtttttcctgcctttggcgttcctgttctcgtttctt 15830159

                                             
Query: 441      tgcggtctcagctgcagtgtcttttcgaa 469
                |||  ||||||| |||||||| |||||||
Sbjct: 15830158 tgctatctcagcagcagtgtcctttcgaa 15830130



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Minus

                                                                            
Query: 470      tttgtttgttaagctgtttgctcattatccttttaaggcgttcctgtggtgtttctttct 529
                |||| |||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 15830019 tttgcttgttaagttgtttgctcattattcttttaagtcgttcttgtggtgtttctttct 15829960

                    
Query: 530      tttc 533
                ||||
Sbjct: 15829959 tttc 15829956



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                                
Query: 142      ttcagtgccttgatctgcttctgtacctgcag 173
                ||||||||||||| ||||||||||||||||||
Sbjct: 15830738 ttcagtgccttgacctgcttctgtacctgcag 15830707



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 307      ctcctactacggcttctgctgtaatgccgctttct 341
                |||||||||||||||||||| ||||| ||| ||||
Sbjct: 15830545 ctcctactacggcttctgctataatgtcgccttct 15830511

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  105 bits (53), Expect = 2e-19
 Identities = 80/89 (89%)
 Strand = Plus / Minus

                                                                            
Query: 381      cctgtatcgacctacttctgcaagtttttcatgcctttgccgttcctgttctcgtttctt 440
                |||||| |||||||| || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 15824752 cctgtaccgacctacctccgcaagtttttcctgcctttggcgttcctgttctcgtttctt 15824693

                                             
Query: 441      tgcggtctcagctgcagtgtcttttcgaa 469
                |||  ||||||| |||||||| |||||||
Sbjct: 15824692 tgctatctcagcagcagtgtcctttcgaa 15824664



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Minus

                                                                            
Query: 470      tttgtttgttaagctgtttgctcattatccttttaaggcgttcctgtggtgtttctttct 529
                |||| |||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 15824553 tttgcttgttaagttgtttgctcattattcttttaagtcgttcttgtggtgtttctttct 15824494

                    
Query: 530      tttc 533
                ||||
Sbjct: 15824493 tttc 15824490



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                                
Query: 142      ttcagtgccttgatctgcttctgtacctgcag 173
                ||||||||||||| ||||||||||||||||||
Sbjct: 15825272 ttcagtgccttgacctgcttctgtacctgcag 15825241



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 307      ctcctactacggcttctgctgtaatgccgctttct 341
                |||||||||||||||||||| ||||| ||| ||||
Sbjct: 15825079 ctcctactacggcttctgctataatgtcgccttct 15825045

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>ref|NM_119861.3| Arabidopsis thaliana unknown protein AT4G36980 mRNA, complete cds
          Length = 1935

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 94/118 (79%)
 Strand = Plus / Minus

                                                                        
Query: 413  gcctttgccgttcctgttctcgtttctttgcggtctcagctgcagtgtcttttcgaattt 472
            ||||||| || ||||||||||||||||| || || || | ||||| ||||||   |||||
Sbjct: 1453 gcctttgtcgctcctgttctcgtttcttagccgtttctgttgcagagtctttcttaattt 1394

                                                                      
Query: 473  gtttgttaagctgtttgctcattatccttttaaggcgttcctgtggtgtttctttctt 530
            | ||  | ||||||||| |||| || || || || ||||| || || |||||||||||
Sbjct: 1393 gcttcgttagctgtttgttcatgattctcttcagtcgttcttggggagtttctttctt 1336

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>gb|AC167725.9| Mus musculus  BAC RP24-421G17 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 210774

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 214    ggaacatacctatccaccatga 235
              ||||||||||||||||||||||
Sbjct: 135950 ggaacatacctatccaccatga 135971

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>gb|AC104365.4| Homo sapiens chromosome 18, clone RP11-108P20, complete sequence
          Length = 157871

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 156    ctgcttctgtacctgcagtatt 177
              ||||||||||||||||||||||
Sbjct: 140750 ctgcttctgtacctgcagtatt 140729

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>gb|AC138744.4| Homo sapiens chromosome 17, clone RP11-859E19, complete sequence
          Length = 177325

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 511   tcctgtggtgtttctttctttt 532
             ||||||||||||||||||||||
Sbjct: 82336 tcctgtggtgtttctttctttt 82315

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>gb|AC158669.3| Mus musculus 6 BAC RP23-66K6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 242779

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 214   ggaacatacctatccaccatga 235
             ||||||||||||||||||||||
Sbjct: 33256 ggaacatacctatccaccatga 33277

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>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome
          Length = 1827111

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 392     ctacttctgcaagtttttcat 412
               |||||||||||||||||||||
Sbjct: 1534364 ctacttctgcaagtttttcat 1534384

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>emb|AL596171.1| Listeria innocua Clip11262 complete genome, segment 9/12
          Length = 258650

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 469  atttgtttgttaagctgtttg 489
            |||||||||||||||||||||
Sbjct: 3786 atttgtttgttaagctgtttg 3766

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>gb|AC068640.29| Homo sapiens 12 BAC RP11-105I4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 99930

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 393   tacttctgcaagtttttcatg 413
             |||||||||||||||||||||
Sbjct: 66982 tacttctgcaagtttttcatg 66962

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>gb|AC009387.27| Homo sapiens 12 BAC RP11-110L15 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 99867

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 393   tacttctgcaagtttttcatg 413
             |||||||||||||||||||||
Sbjct: 66890 tacttctgcaagtttttcatg 66870

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>ref|NM_120197.3| Arabidopsis thaliana copper ion binding AT5G01190 mRNA, complete cds
          Length = 1821

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 335  gctttcttggtggagaatgg 354
            ||||||||||||||||||||
Sbjct: 1603 gctttcttggtggagaatgg 1622

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>gb|AC156952.22| Mus musculus 10 BAC RP24-385D2 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 179140

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 553    agtcctccagaagcaccctt 572
              ||||||||||||||||||||
Sbjct: 139430 agtcctccagaagcaccctt 139449

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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 585     tgctgatgatgtgctggcag 604
               ||||||||||||||||||||
Sbjct: 1225937 tgctgatgatgtgctggcag 1225956

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>gb|BT021566.1| Bos taurus LIM domain only 6 (LMO6), mRNA, complete cds
          Length = 1827

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 444  ggtctcagctgcagtgtctt 463
            ||||||||||||||||||||
Sbjct: 1602 ggtctcagctgcagtgtctt 1583

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>gb|AC145785.2| Xenopus tropicalis clone CH216-102H4, complete sequence
          Length = 151691

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    taccaacaatgatgggatcc 42
             ||||||||||||||||||||
Sbjct: 23349 taccaacaatgatgggatcc 23368

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>gb|AY551075.1| Drosophila buzzatii 2j inversion proximal breakpoint sequence, 2j
           arrangement
          Length = 8856

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 472 tgtttgttaagctgtttgct 491
           ||||||||||||||||||||
Sbjct: 755 tgtttgttaagctgtttgct 774

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>gb|AY551073.1| Drosophila buzzatii 2j inversion proximal breakpoint sequence, 2st
            arrangement
          Length = 5481

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 472  tgtttgttaagctgtttgct 491
            ||||||||||||||||||||
Sbjct: 1148 tgtttgttaagctgtttgct 1167

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>gb|BT014855.1| Arabidopsis thaliana At5g01190 gene, complete cds
          Length = 1677

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 335  gctttcttggtggagaatgg 354
            ||||||||||||||||||||
Sbjct: 1603 gctttcttggtggagaatgg 1622

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>gb|AC161280.2| Pan troglodytes BAC clone CH251-392H4 from chromosome 7, complete
             sequence
          Length = 190939

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 555   tcctccagaagcacccttta 574
             ||||||||||||||||||||
Sbjct: 31053 tcctccagaagcacccttta 31072

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>gb|AC161123.3| Pan troglodytes BAC clone CH251-618D5 from chromosome 7, complete
             sequence
          Length = 190856

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 555   tcctccagaagcacccttta 574
             ||||||||||||||||||||
Sbjct: 95975 tcctccagaagcacccttta 95994

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>gb|AC147826.2| Xenopus tropicalis clone CH216-138M21, complete sequence
          Length = 145416

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 32   tgatgggatccaggacttgattgg 55
            |||| |||||||||||||||||||
Sbjct: 6373 tgataggatccaggacttgattgg 6350

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>gb|AC136699.23| Mus musculus chromosome 9, clone RP23-18E24, complete sequence
          Length = 229184

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   gcaagtttttcatgcctttg 419
             ||||||||||||||||||||
Sbjct: 73227 gcaagtttttcatgcctttg 73208

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>emb|AJ012166.1|CFA012166 Canis familiaris TCTA gene, AMT gene, NICN1 gene, DAG1 gene and BSN
             gene (partial)
          Length = 162073

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 583   agtgctgatgatgtgctggcaggtggtt 610
             ||||||| || |||||||||||||||||
Sbjct: 84207 agtgctgctgctgtgctggcaggtggtt 84234

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>gb|AC130206.2| Mus musculus BAC clone RP24-448F6 from chromosome 13, complete sequence
          Length = 155659

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 407    tttcatgcctttgccgttcctgtt 430
              |||||||||| |||||||||||||
Sbjct: 114149 tttcatgcctgtgccgttcctgtt 114126

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>gb|AC151527.13| Medicago truncatula clone mth2-135i19, complete sequence
          Length = 132470

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   tgtttgctcattatcctttt 503
             ||||||||||||||||||||
Sbjct: 93142 tgtttgctcattatcctttt 93123

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>emb|AL163544.24| Human DNA sequence from clone RP11-322A14 on chromosome 13, complete
             sequence
          Length = 60286

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 544   gttttaccaagtcctccaga 563
             ||||||||||||||||||||
Sbjct: 30155 gttttaccaagtcctccaga 30174

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>emb|AL035682.16|HS1009H6 Human DNA sequence from clone RP5-1009H6 on chromosome 20 Contains the
             3' end of the NFATC2 gene for cytoplasmic
             calcineurin-dependent (2) nuclear factor of activated
             T-cells, complete sequence
          Length = 89163

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 136   gatactttcagtgccttgatctgcttct 163
             |||||||||||| ||||||||| |||||
Sbjct: 66087 gatactttcagttccttgatctccttct 66114

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>emb|Z99707.1|ATAP21 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1
          Length = 206420

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 413    gcctttgccgttcctgttctcgtttctt 440
              ||||||| || |||||||||||||||||
Sbjct: 133279 gcctttgtcgctcctgttctcgtttctt 133252

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>emb|AL161590.2|ATCHRIV86 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86
          Length = 198780

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 413    gcctttgccgttcctgttctcgtttctt 440
              ||||||| || |||||||||||||||||
Sbjct: 121955 gcctttgtcgctcctgttctcgtttctt 121982

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>emb|AL137189.2|ATF7J8 Arabidopsis thaliana DNA chromosome 5, BAC clone F7J8 (ESSA project)
          Length = 118507

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 335   gctttcttggtggagaatgg 354
             ||||||||||||||||||||
Sbjct: 69955 gctttcttggtggagaatgg 69974

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>ref|NM_143409.1| Drosophila melanogaster CG11873-RA (CG11873), mRNA
          Length = 8934

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 287  ggtttcttcttgggctccgg 306
            ||||||||||||||||||||
Sbjct: 2198 ggtttcttcttgggctccgg 2179

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>gb|AC073938.11|AC073938 Mus musculus 18 BAC RP23-292H1 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 205547

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 230    ccatgaattaccttggagagtaaa 253
              |||||||||| |||||||||||||
Sbjct: 177175 ccatgaattaacttggagagtaaa 177152

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>gb|AC007947.5|AC007947 Drosophila melanogaster, chromosome 3R, region 98F-98F, BAC clone
              BACR11O03, complete sequence
          Length = 168505

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 287    ggtttcttcttgggctccgg 306
              ||||||||||||||||||||
Sbjct: 136244 ggtttcttcttgggctccgg 136225

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>gb|AC005075.2|AC005075 Homo sapiens BAC clone CTA-219E16 from 7, complete sequence
          Length = 118334

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 555   tcctccagaagcacccttta 574
             ||||||||||||||||||||
Sbjct: 60462 tcctccagaagcacccttta 60481

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>gb|AC020967.2|AC020967 Mus musculus chromosome 18 clone RP23-161O8, complete sequence
          Length = 225883

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 230    ccatgaattaccttggagagtaaa 253
              |||||||||| |||||||||||||
Sbjct: 118337 ccatgaattaacttggagagtaaa 118360

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>ref|NM_001014886.1| Bos taurus LIM-only protein 6 (LMO6), mRNA
          Length = 1827

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 444  ggtctcagctgcagtgtctt 463
            ||||||||||||||||||||
Sbjct: 1602 ggtctcagctgcagtgtctt 1583

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>gb|AE003768.2| Drosophila melanogaster chromosome 3R, section 106 of 118 of the
             complete sequence
          Length = 243118

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   ggtttcttcttgggctccgg 306
             ||||||||||||||||||||
Sbjct: 66947 ggtttcttcttgggctccgg 66928

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>gb|AC093445.4| Mus musculus strain C57BL/6J chromosome 1 clone rp23-267j18, complete
             sequence
          Length = 161678

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   aagaactctgagatactttc 144
             ||||||||||||||||||||
Sbjct: 70639 aagaactctgagatactttc 70620

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>gb|U97104.1|BTU97104 Bactrocera tryoni membrane transporter (white) gene, complete cds
          Length = 15747

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 615 aaaatttgcacttttttcct 634
           ||||||||||||||||||||
Sbjct: 888 aaaatttgcacttttttcct 869

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>gb|AC153893.3| Mus musculus 10 BAC RP23-124O20 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 228194

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 553   agtcctccagaagcaccctt 572
             ||||||||||||||||||||
Sbjct: 22587 agtcctccagaagcaccctt 22606

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>emb|AL929200.8| Zebrafish DNA sequence from clone CH211-190B21, complete sequence
          Length = 120682

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   ggtatgcatctttaaatctt 211
             ||||||||||||||||||||
Sbjct: 59550 ggtatgcatctttaaatctt 59531

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>gb|AC102045.14| Mus musculus chromosome 1, clone RP23-335P21, complete sequence
          Length = 190825

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   aagaactctgagatactttc 144
             ||||||||||||||||||||
Sbjct: 17562 aagaactctgagatactttc 17581

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>emb|AL954698.9| Zebrafish DNA sequence from clone CH211-233B16 in linkage group 6,
              complete sequence
          Length = 177161

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    ggtatgcatctttaaatctt 211
              ||||||||||||||||||||
Sbjct: 144921 ggtatgcatctttaaatctt 144902

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>emb|AL928872.7| Zebrafish DNA sequence from clone DKEYP-59A2, complete sequence
          Length = 200760

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    ggtatgcatctttaaatctt 211
              ||||||||||||||||||||
Sbjct: 127655 ggtatgcatctttaaatctt 127674

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>emb|AL591770.3|CNS07EGN Human chromosome 14 DNA sequence BAC R-1140I5 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158392

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 515   gtggtgtttctttcttttcg 534
             ||||||||||||||||||||
Sbjct: 23795 gtggtgtttctttcttttcg 23776

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>emb|AL162891.4|CNS01RI6 Human chromosome 14 DNA sequence BAC R-353P15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163452

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 610   ttcaaaaaatttgcactttt 629
             ||||||||||||||||||||
Sbjct: 46211 ttcaaaaaatttgcactttt 46230

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>dbj|D16579.1| Dictyostelium discoideum mitochondrial DNA for NADH dehydrogenase
            subunits and cytochrome oxidase subunit ,complete cds
          Length = 6483

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  aattaccttggagagtaaaa 254
            ||||||||||||||||||||
Sbjct: 6203 aattaccttggagagtaaaa 6222

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>dbj|AB000109.1| Dictyostelium discoideum mitochondrial DNA, complete sequence
          Length = 55564

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  aattaccttggagagtaaaa 254
            ||||||||||||||||||||
Sbjct: 6083 aattaccttggagagtaaaa 6102


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,414,940
Number of Sequences: 3902068
Number of extensions: 8414940
Number of successful extensions: 145949
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145686
Number of HSP's gapped (non-prelim): 261
length of query: 644
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 621
effective length of database: 17,143,297,704
effective search space: 10645987874184
effective search space used: 10645987874184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result