>UMP6_ARATH (Q9SX77) Unknown protein At1g47420, mitochondrial precursor|
          Length = 257

 Score =  169 bits (427), Expect = 8e-42
 Identities = 78/116 (67%), Positives = 98/116 (84%)
 Frame = -1

Query: 639 EALENVFRAAEACEEFSGVLVTLRMALDDLCGLTGENVGPLPGYLEEAVKSAYSRYMTYL 460
           EAL+NVFRAAEA EEF G+L +++M +DD  G++GE V PLP  + +A+++AY RY  YL
Sbjct: 142 EALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYL 201

Query: 459 ESFGPEEHYLRKKVETELGTKMIHLKMRCSGIGSEWGKITLIGTSGISGSYVEMRA 292
           +SF PEE YL+KKVE ELGTKMIHLKMRCSG+GSEWGK+T++GTSG+SGSYVE RA
Sbjct: 202 DSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257

>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 32.7 bits (73), Expect = 0.94
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
 Frame = -2

Query: 362 GLSGERSP--------LLAPQGSQGPMLR*GHDGTLIPEPWPNTDGLTGSCVSISEPGVP 207
           G+SG   P        L  P+G QGP+ R G  G + P  +    G +G   +   PG P
Sbjct: 802 GISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTP 861

Query: 206 FP 201
            P
Sbjct: 862 GP 863

>CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor|
          Length = 689

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -2

Query: 362 GLSGERSP--LLAPQGSQGPMLR*GHDGTLIPEPWPNTDGLTGSCVSISEPGVP 207
           G  G R P  +  P+G+ GP    G DGT      P T G+ GS     +PG P
Sbjct: 283 GSPGIRGPQGITGPKGATGPPGINGKDGT------PGTPGMKGSAGQAGQPGSP 330

>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor|
          Length = 1364

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
 Frame = -2

Query: 362 GLSGERSP--------LLAPQGSQGPMLR*GHDGTLIPEPWPNTDGLTGSCVSISEPGVP 207
           G+SG   P        L  P+G QGP+ R G  G   P  +    G +G   +   PG P
Sbjct: 800 GISGPPGPPGPAGKEGLRGPRGDQGPVGRSGETGASGPPGFVGEKGPSGEPGTAGPPGTP 859

Query: 206 FP 201
            P
Sbjct: 860 GP 861

>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1418

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -2

Query: 362 GLSGERSPLLA--PQGSQGPMLR*GHDGTLIPEPW---PNTDGLTGSCVSISEPGV 210
           G  GE  P  A  P+G+QGP    G  G+  P      P TDG+ G+  S   PG+
Sbjct: 303 GAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGI 358

>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -2

Query: 362 GLSGERSPLLAPQGSQGPMLR*GHDGTLIPEPWPNTDGLTGSCVSISEPGVPFP 201
           G +G+   L  P+G QGP+ R G  G   P  +    G +G   +   PG P P
Sbjct: 811 GAAGKEG-LRGPRGDQGPVGRTGETGASGPPGFTGEKGPSGEPGTAGPPGTPGP 863

>CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragments)|
          Length = 747

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -2

Query: 362 GLSGERSPLLA--PQGSQGPMLR*GHDGTLIPEPW---PNTDGLTGSCVSISEPGV 210
           G  GE  P  A  P+G+QGP    G  G+  P      P TDG+ G+  S   PG+
Sbjct: 187 GAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAAGNPGTDGIPGAKGSAGAPGI 242

>MPK3_ARATH (Q39023) Mitogen-activated protein kinase homolog 3 (EC 2.7.11.24)|
           (MAP kinase 3) (AtMPK3)
          Length = 370

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 314 PEIPEVPIRVIFPHSDPMPLHLIFR*IIFVPN 409
           P  P  P+  +F H +PM + L+ R + F PN
Sbjct: 279 PNFPRQPLAKLFSHVNPMAIDLVDRMLTFDPN 310

>SUBF_BACSU (P16397) Bacillopeptidase F precursor (EC 3.4.21.-) (Esterase)|
           (RP-I protease) (90 kDa serine proteinase)
          Length = 1433

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 463 SGIFWS*RALSTEKSGDRVGDKNDSPENEMQWHRV*VGKDHPY 335
           +G+ W+  AL  +  G    + N+ PENEM W+    G+  PY
Sbjct: 228 TGVEWNHPALKEKYRGYNPENPNE-PENEMNWYDAVAGEASPY 269

>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor|
          Length = 688

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = -2

Query: 362 GLSGERSP--LLAPQGSQGPMLR*GHDGTLIPEPWPNTDGLTGSCVSISEPGVP 207
           G  G R P  +  P+G  GP    G DGT      P   G+ GS   +  PG P
Sbjct: 282 GSQGARGPQGITGPKGITGPPGIDGKDGT------PGIPGMKGSAGQVGRPGSP 329

>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -2

Query: 362 GLSGERSP--LLAPQGSQGPMLR*GHDGTLIPEPWPNTDGLTGSCVSISEPGVPFP 201
           G +GE  P  LL P+GS GP  R G  G          DG  G+  ++  PG P P
Sbjct: 593 GQAGEPGPRGLLGPRGSPGPTGRPGVTG---------IDGAPGAKGNVGPPGEPGP 639

>POLN_EEEV1 (Q306W6) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
           2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2470

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
 Frame = -1

Query: 612 AEACEEFSGVLVTLRMALDD-------------LCGLTGENVGPLPGYLEEAVKSAYSRY 472
           A  C++ +G+L T  +++DD             + G T  N   +P YL   V  A+SR+
Sbjct: 334 ATLCDQMTGILAT-DVSVDDAQKLLVGLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRW 392

Query: 471 MTYLESFGPEEHYLRKKVETELGTKMIHLKMRC 373
                     E++   + E +LG +   L M C
Sbjct: 393 --------AREYHADLEDEKDLGVRERSLVMGC 417

>CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
 Frame = -2

Query: 362 GLSGERSPLLAPQGSQGPMLR*GHDGTLIPEPWPNTDGLT---------GSCVSISEPGV 210
           G+ G+R P   P G  GP    G  G       P  DGLT         GS     EPGV
Sbjct: 290 GIDGDRGPK-GPPGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGV 348

Query: 209 PFPFIFP 189
           P    FP
Sbjct: 349 PGSRGFP 355


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,579,091
Number of Sequences: 219361
Number of extensions: 2170429
Number of successful extensions: 5631
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5612
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)